LOCUS       XM_006246068            5960 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus WD repeat domain 90 (Wdr90),
            transcript variant X2, mRNA.
ACCESSION   XM_006246068
VERSION     XM_006246068.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Aug 15, 2024 this sequence was replaced by
            NM_001433408.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006246068.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5960
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..5960
                     /gene="Wdr90"
                     /note="WD repeat domain 90; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 30 long SRA reads, 1 Protein"
                     /db_xref="GeneID:102555298"
                     /db_xref="RGD:7520481"
     CDS             39..5660
                     /gene="Wdr90"
                     /codon_start=1
                     /product="WD repeat-containing protein 90 isoform X2"
                     /protein_id="XP_006246130.1"
                     /db_xref="GeneID:102555298"
                     /db_xref="RGD:7520481"
                     /translation="MAGGSGARVRRVSRPGSPGSEVPAASVTRPHVEARSAGGGGGSR
                     RAAQDRCSGGVPSAAWQHPFLNVFRHFRMDEWKRSSKEGDVAVVTDKVLKSAVYRIRG
                     SVSASNYIQLPRTSTQSLGLTGRYLYVLFRPLPTKHFVIHLDVSTEDGQVIRVSFSNL
                     FKEFKSSATWLQFPFVFETKTARRDLAGVAPPRARWTCLHLDLRDILMFYLSRHYSHL
                     KSIRLCASLLVRNLYTSDLCFDPAVTVTEARRAKLSVSPMPREMAFPVPKGESWHDHY
                     IHIRFPSDGSKAPDTQVEKSCSPPEAVLLGHVSRCLPHPVAFGKPLLSSRSPVAQTSS
                     HRCPLPCQVLSAPRHLPEVSLTYKYPEVSSVSAFSIRGQSPSAWDEVTHAHTEAGGRH
                     VLADESSGVPMALEDIGSCKLFLPDPVLRLKGVIGFGGHSTQWALWTKDGVAVVYPCH
                     AVIIVLQIDTGQQRFFLGHTDKVSALSLNGNDTLLASAQVQPPSMVRLWDFQTGGCLS
                     LFRSPLHTICSLSFSDSGALLCGVGKDRHGRTVVVVWGTDQVGLGGEVVVLAKVHTDF
                     DVHTFRIACFDETRMASCGRGSVRLWRLRGGVLRSCAVDLGEYCTLELTDLAFAQALD
                     GHHVPSAGMLFVCSHSGHILEIDHQCMAVRHVRRLLPAQPPGAPLTEKQNFSMGSGIA
                     ISSLSVSTTTCAVGSEDGYLRLWPLDFSSVLLETEHDGPVSSVSFSPDGLRVLSTTTS
                     GHLGFLDVPSREYTVLARSHMAPVLALSTEQNQGQMATVSLDHTVRIWDLATLQQLYD
                     FSSSEDAPCAIAFHPTMPNFFCGFSSGAVRSFSLENSGVLVEHTRHRGAITSLVITPD
                     GRFLFSSCSQGSLVQYNCAVSRCCVLRVAANLVCQDGRPNPNILAVSGDSCRLAFVGP
                     SKCMVTVVDSVSLDELLHVDVSTLNLASNHPDWAVAVCFSPRNSGHLLVSTSSNKVVV
                     LDAVSGHTVRELSSVRSRACSSLALSEDSRLLVAATGRTITVWDYPTQASPSCQVYIG
                     HSEPVHAVAFTPDQLQLISAGDAIFLWDVQATPERDGSDPEACPVHEAGSNARHLEDL
                     ASGASGLPRQQVPVPSQASLPPRSTHDRLLEGSTGTFSTSDEEGLGEENHVFEAFLQG
                     QAPTPPVLVEKEASGGGDAPREAAKSSWTHAELPNHHSQMSEWSLRSGKAGLPTRPDS
                     YKHFTARYKTSTRVKSVSLPPVGREQLRLKAVVGYNGNGRANMVWRPDTGFFAYTCGR
                     LVVVEDLHSGTQRHWLGHPQEISTLALNQDGQVLASASCCGNTAARCQIRIWDVPQGL
                     CRHLLSHHDTAVQAVAFSPDDEFLVTLGDYADRSLALWSMATYELLSSTRLLEPVHGV
                     AFNPWDANELICVGTSAITFWLLQHQGTDTSFQVHREPVPEELGASELTSLCYGASPL
                     LYCGSSSGQVCVWDTGTGHCFLAWEADDGEIGVLLCSGSRLVSGSNTRRLRLWAVGVV
                     PELRRKGSSARSSSVFMERELTLDGAVVSASFDSGMDMGVVGTTAGTIWYVNWTEGTS
                     TRLISGHRTKVNEVVFSPSESHCATCGEDGSVRVWSLASMELVIQFQVLNQSCLCVAW
                     TPQSCGLPEQQQVVAGYSDGTLRVFSISRTALELKMHPHRSALTAIAFSTDGQTILSG
                     DKDGLVAVSHPCTGMTFRVLSDHRGAPISAIQSTSKEYGDLGVEGVELWLAASADQRV
                     SIWASDWLRDRCELLEWLSFPAPAVSKAPGLLPPSLAAFCPWDRAILVCVGLGAHEEV
                     VFYNLRQKQVVQKTPLPFFAMSLSLSPGAQLMAVGFAECMLRLLDCVSGTAQDFEGHD
                     DSVHLCRFTPSGRLLFTAAHNEILVWEVTGP"
     polyA_site      5960
                     /gene="Wdr90"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cagcgtatgc tgaggcggga agcgcgagct gtagcgccat ggcgggaggt agcggcgcgc
       61 gcgtccgtcg ggtctcgcgc cccgggagtc ccgggtccga ggtccccgct gcgtcagtga
      121 ctagacctca tgtagaagcc cgttccgcgg gcggaggtgg agggtcgcgg cgcgctgccc
      181 aagaccggtg ctcaggcggc gtcccttctg ctgcttggca gcaccctttc ctcaacgtat
      241 tcagacactt caggatggat gagtggaaac ggtccagcaa agagggagat gtggccgtgg
      301 tgacggacaa ggtcttgaag agcgccgtgt atcgcatccg tgggtccgta tctgccagca
      361 actacatcca gctccccaga accagcaccc agtctctggg gctgactggg cggtacctat
      421 atgtgctttt ccggcccctg cccaccaagc actttgtcat ccacctggac gtgtccaccg
      481 aggacggcca ggtcatccgt gtgtctttct ccaacctctt taaggagttc aagtcctctg
      541 caacatggct tcagttcccc tttgtcttcg agactaagac agccaggaga gacctggcag
      601 gtgtagctcc tcctcgtgcc cgctggacct gcctacattt ggacctgcgt gacatcctga
      661 tgttctacct gagccgtcac tatagccacc tcaagagcat caggctgtgt gccagcctgc
      721 tagtcagaaa cctctacacc agcgatctgt gctttgaccc tgctgtcact gtcaccgagg
      781 cccggcgtgc aaagttgtct gtcagtccta tgcctcgaga aatggccttc ccggtgccga
      841 aaggggagag ctggcatgac cactacatcc acattcggtt tccaagtgac ggttcaaagg
      901 cacctgatac gcaggttgag aagagctgtt cccctccaga ggcagtcctc ctggggcatg
      961 tgtcacggtg tctacctcat ccagtggcct ttggtaaacc tttgctgagc agtagatccc
     1021 ctgtggccca gacatctagc cacagatgtc cattgccatg ccaggtcctt tcagcaccca
     1081 gacaccttcc agaggtcagc ctgacctaca agtatccaga agtgtccagt gtaagtgcct
     1141 tcagcatccg tggccagagt ccttcagcct gggatgaggt tacccatgca cacacggagg
     1201 ccggtgggag acatgttctt gccgacgaat cgtctggagt acctatggcc cttgaggaca
     1261 ttggctcctg taagctcttc ctcccagacc cagtcctgag gctcaaggga gtcatcggct
     1321 ttgggggcca cagcacccaa tgggccctgt ggactaaaga tggtgtggct gttgtttacc
     1381 cctgccatgc ggtcataatc gtcctgcaga ttgacactgg acagcagaga tttttccttg
     1441 gccacactga caaggtctct gccctgtcac ttaatggcaa tgatacactg ctagcctcag
     1501 ctcaagtgca gcctcccagc atggtgcgtc tctgggactt ccagactggg ggatgcctgt
     1561 ctctcttcag gagcccactg cacaccatct gctccctcag cttctctgac agtggggcgc
     1621 tcctctgcgg tgtgggcaag gacagacatg ggaggacggt ggtggtggtc tggggcacag
     1681 accaggtggg ccttggaggt gaggtagtgg ttcttgcaaa agtgcatact gactttgacg
     1741 ttcacacctt ccggatcgcc tgttttgatg aaaccaggat ggcatcatgt gggcggggca
     1801 gtgtgcggct ctggcgactt cggggtggcg tccttcgatc ctgtgctgta gacctagggg
     1861 agtactgtac actggagctc actgaccttg cctttgcaca ggcgctggat ggccaccacg
     1921 tgccctcggc tggcatgctc tttgtgtgca gccatagtgg tcacatcctg gagattgacc
     1981 accagtgcat ggctgtgcgg cacgtccgcc gcttgctgcc tgcacagcct cctggtgctc
     2041 ccctcactga gaagcagaac ttcagcatgg ggtccggtat tgccatcagt agcctcagtg
     2101 tctctactac cacatgtgct gtgggctctg aggatggcta cctgcgactc tggcccctgg
     2161 acttttcctc agtgctccta gagactgaac acgatggccc tgtcagttca gtctccttca
     2221 gtcccgatgg tctgcgtgtg ctgtccacca ccacttcagg ccacctgggc ttcctggatg
     2281 ttccctcccg ggagtacact gtgttggcac gctcccacat ggccccagtg ctggcacttt
     2341 ctacagaaca gaaccaggga cagatggcca ctgtgtccct tgatcacact gtccgcatct
     2401 gggacctggc taccctacag cagctgtatg acttctcatc ctctgaggac gcgccttgtg
     2461 ccattgcttt ccaccccaca atgccaaact tcttctgtgg cttcagcagt ggggctgtac
     2521 gttcctttag cttggagaac tctggagtcc tggtggaaca cacgcgtcac cgaggggcca
     2581 tcaccagcct ggtcatcacc cctgacggca gattcctgtt cagctcctgc tctcagggct
     2641 ccctagtcca gtacaactgt gctgtctccc gatgctgcgt tctacgtgtg gcagccaact
     2701 tggtatgtca ggatggccgc cccaacccca atattctggc agtcagtgga gacagctgcc
     2761 ggctggcctt tgtgggcccc tccaagtgca tggtgacagt tgtggactcg gtctccttgg
     2821 atgagctact ccatgttgat gtcagcaccc tcaacctggc cagcaaccac ccagactggg
     2881 ctgtggccgt ctgcttcagc cccaggaact caggccatct gctggtgtcc acatcttcta
     2941 acaaggttgt ggtactggat gctgtatcag gacatactgt ccgggagtta tctagtgtcc
     3001 gctccagagc ctgctcctcc ctggctctca gtgaggactc tcgtttgctg gtggcagcca
     3061 ctggccggac catcacagtg tgggattatc caacacaggc cagccccagc tgccaggtat
     3121 acattggcca ctcagagcct gtgcatgctg tagccttcac acccgatcag ctgcagctca
     3181 tcagtgcggg agatgccatc ttcctctggg acgtgcaggc cacccctgag agagatggaa
     3241 gtgatcctga ggcatgccca gtgcatgagg ctggctctaa tgcacgacat ctggaggacc
     3301 tggcatccgg ggccagtgga ctccctcggc agcaagtgcc tgtaccatct caggcatcac
     3361 tgcccccacg gagtacccat gacagactcc ttgaaggcag tactggcacc ttctccacat
     3421 ctgatgagga gggacttggt gaggagaacc atgtttttga ggcattcctc caaggccagg
     3481 ccccgacccc acctgtgctg gtggagaagg aggccagtgg aggtggggat gcccctcgag
     3541 aggctgcaaa gagctcttgg acacatgccg agcttcccaa tcaccacagc caaatgagtg
     3601 aatggagcct tcggagtgga aaggctgggc tcccaacccg cccagattcc tacaagcact
     3661 tcacagctcg atataagacc tctacacggg ttaagagtgt ctccctccct cccgttggca
     3721 gggagcagct gcgactgaag gccgtggtgg gctacaatgg gaatgggcgg gccaacatgg
     3781 tctggagacc tgacacaggc ttctttgcct acacatgtgg tcgcctagtg gtagtggagg
     3841 acctgcattc tggcacccag cggcactggc ttggccatcc tcaggagatc tctactctgg
     3901 cactcaacca ggatggccag gtcttggcct ctgcctcctg ctgtggcaac acagctgccc
     3961 gctgccagat ccgaatttgg gatgttcccc agggcctctg ccggcacctc ctttcccacc
     4021 atgacacagc cgtccaagct gtggcgttct caccagatga tgagttcctt gtaacgttgg
     4081 gggactatgc tgaccggagc cttgccctgt ggagcatggc cacctatgaa cttctgtcat
     4141 ccactcgcct cctggagcct gtgcatggtg tggcctttaa cccttgggat gccaatgagc
     4201 tcatctgtgt gggcacaagt gccatcacct tctggctcct gcagcaccaa gggacagata
     4261 ccagctttca ggtacaccga gaaccagtcc ctgaggaact gggggcgtcc gagttgacct
     4321 cactctgcta tggggccagc cctctgctct attgcggctc cagctctggc caggtctgtg
     4381 tctgggacac tggcactggc cactgcttcc tggcctggga ggctgatgat ggcgagattg
     4441 gagtgctgct gtgctcaggc tctagactgg tcagtgggag taacacaaga aggctgcgcc
     4501 tttgggctgt gggggttgtg ccagagttga ggcgaaaagg ctcaagtgcc agatccagct
     4561 ctgttttcat ggagcgtgag ctgaccctgg acggggctgt tgtgagtgcc agcttcgaca
     4621 gcggcatgga catgggtgta gtgggcacca cagctggcac aatctggtat gtcaactgga
     4681 cggagggcac tagcacccgc ctcatcagcg gccacaggac caaggtaaac gaggtggtct
     4741 tcagccccag tgaatctcac tgcgccacct gtggtgagga cgggagcgtg agggtgtggt
     4801 ctctggccag catggagctg gtgatccagt ttcaggtgct gaaccagagc tgcctctgcg
     4861 tcgcgtggac gccccagtcc tgtggactcc cggagcagca gcaggtggtg gcaggctaca
     4921 gcgatggcac acttcgagtc ttcagcatct ctcgtaccgc attggaactc aagatgcacc
     4981 cccaccggag cgccctgacg gccatcgcct tctccactga cggtcagacc atcctatctg
     5041 gagataagga tggactggtg gctgtcagcc acccctgcac tggaatgacc ttccgtgtgc
     5101 tcagtgacca ccggggtgcc cccatctctg ctatccagag cacgagcaaa gaatatggag
     5161 acctaggggt agagggagta gaactgtggc tggctgcgag tgcggaccag cgtgtcagca
     5221 tctgggcctc tgactggctc cgggaccgct gtgagctcct ggaatggttg agctttcctg
     5281 ctcctgccgt ctcaaaggct ccaggcctcc tgcccccctc tcttgctgcc ttctgccctt
     5341 gggatagggc gatactggtg tgtgtgggcc ttggtgcaca tgaagaggtc gtcttctaca
     5401 acctccgcca aaagcaggtg gtacagaaga cacctctgcc cttctttgcc atgtctttga
     5461 gcctgtctcc aggggctcag ctcatggcgg ttggttttgc tgaatgtatg ctgaggctcc
     5521 tagactgtgt gtcagggact gcccaggact ttgaaggcca cgatgactca gtacacctgt
     5581 gtaggttcac gccgtccggc aggctgctct tcacagctgc tcacaacgag atccttgtgt
     5641 gggaagtcac tggcccctga gctgccctta ggaacatagg caggaaagcc agactatgga
     5701 ctgctgtatg ccaagccagg atggctggga caggcttcag aaccgcattg cttggaattt
     5761 ggggtgaaat ctgaaaagat ttaaggaggt tgagggtgtg gcactggctt agaatctgtg
     5821 aagcatggat ttgagcctaa gaaccactcc cccctcacac agaagatttg gcatactgtg
     5881 ttgtttttca catgaaggtt gttttattgt ttttattttg tacagtttaa gtaaataaaa
     5941 actggtattt atcatatcga
//
