LOCUS       NM_001014078            2099 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Rattus norvegicus WD repeat domain 89 (Wdr89), mRNA.
ACCESSION   NM_001014078 XM_234317
VERSION     NM_001014078.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001014078.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089849.1, SRR21887621.440079.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               JAXUCZ010000006.1  100092416-100092559 c
            145-2099            JAXUCZ010000006.1  100086169-100088123 c
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..2099
                     /gene="Wdr89"
                     /gene_synonym="RGD1307393"
                     /note="WD repeat domain 89"
                     /db_xref="GeneID:314243"
                     /db_xref="RGD:1307393"
     exon            1..144
                     /gene="Wdr89"
                     /gene_synonym="RGD1307393"
                     /inference="alignment:Splign:2.1.0"
     exon            145..2099
                     /gene="Wdr89"
                     /gene_synonym="RGD1307393"
                     /inference="alignment:Splign:2.1.0"
     CDS             175..1335
                     /gene="Wdr89"
                     /gene_synonym="RGD1307393"
                     /codon_start=1
                     /product="WD repeat-containing protein 89"
                     /protein_id="NP_001014100.1"
                     /db_xref="GeneID:314243"
                     /db_xref="RGD:1307393"
                     /translation="MEKIKDQFANLHILRRSSEPKEPTYLLGIDTSKTVPAEKGGLVA
                     VLCSNGSIRIYDKETLNLLREFSGSPGLLNGVRFANSCDNVYSASTDGTVKCWDARLA
                     SEKPAQLFKGYPSNIFISFDVNCKDHIICAGAEKVEDDALLVFWDARFTSQDLSTRDP
                     LGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDLSVDNEEDALVATCNSVSSV
                     SCIGWCGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITCLNIQDVRDVTDVKEGHLDYL
                     IGGLYHENMDRLFVIGGTNLGKIHLLSCTKTGLSHVTSLQGGHAATVRSFCWTVSEDS
                     LLTGGEDAQLLLWKPGAVEKTFTKKDSLKIASSVQQRVRVHSSDSYKKRKQQ"
ORIGIN      
        1 agctcacagg tgctctccac agccgggccg gaagctttgc gataactgcc acagggcaac
       61 ctttctccaa agtttcccgt gcttatgtgt aagaagagta aaccctgagg tcagactctg
      121 gaagttttga cgcagttcct gatgagtttt atatccgtgg atgcttctac tgacatggag
      181 aagattaagg accagtttgc taatctgcat attcttagac ggtcctcgga accgaaagag
      241 cccacttacc tgctgggcat agacacatca aagactgtac cagcagaaaa aggaggcttg
      301 gttgccgttc tgtgttcaaa cgggtcgata agaatatatg ataaagagac actaaatctg
      361 ctacgagaat tcagcggctc tcctgggctt cttaacggag tcaggtttgc aaattcctgt
      421 gacaatgtct actctgcaag cacagatggc actgtaaagt gttgggacgc tcggttagct
      481 agcgaaaagc ccgcgcagtt gttcaagggt tacccttcca atatttttat cagttttgat
      541 gtcaactgca aagatcatat catttgtgct ggtgcagaaa aggtcgagga cgatgcgttg
      601 ctggtatttt gggacgcaag gttcacttct caggatttgt ctactcgaga cccactcgga
      661 gcctattcag agacacacag tgacgatatc actcaggtgc gtttccatcc cagcaatccc
      721 aacatggttg tctcgggctc aactgatggt ctggtgaatg tgtttgacct cagtgttgat
      781 aatgaagagg atgcactggt tgccacctgt aactccgttt catcagtgag ctgtataggt
      841 tggtgtggaa gagattataa acaaatttac tgcatgacgc acgacgaagg gttttgttgg
      901 tgggatctta atcatctgga tacagatgaa ccgattacat gtttgaacat ccaggatgtg
      961 agagacgtaa ccgacgtgaa agaaggtcat ttggactatc tgattggtgg cctgtatcat
     1021 gagaatatgg acagactgtt tgttattgga gggaccaacc tcggaaagat tcacttgctg
     1081 agctgcacca agacaggact gagccacgtg accagccttc agggcgggca cgcagccacc
     1141 gtgcgttctt tctgttggac cgtgtctgag gactctttgc tgaccggagg agaagatgca
     1201 cagctattgc tttggaaacc tggggctgtg gagaagactt tcacaaagaa agacagcttg
     1261 aaaattgcat cctctgtgca gcagcgcgtt cgagtccaca gcagcgattc ttacaagaaa
     1321 aggaagcagc agtgatgtca cgctgggagt ttgaaaagct cttctggttt gaaatcattt
     1381 ttttgccacc tatagcacat cttaaagctt atctgtaaaa gcaggcagtt agcaaccccc
     1441 ccgcccgaca aatatcgaga atggtttaat tcaggttgag acatattcta caatattttt
     1501 aaagcctcca gttgagtata aaaatcagtg acttgacagg gaaattacaa accgcatttt
     1561 gaaacccatc tgttgagtta gtaaatgtta ggtttgaaga aatagctctg aagaggaatc
     1621 ttcagtagaa agctggggag gcaaggaggt ggtttgagtt atgggcttta aactcagctc
     1681 cttacatctg aaatggctta cttgtctatc caacaccggc ctgtgtagtc atttcaagag
     1741 cgtttgcctc cccctatact tactgcatca ttgggtcatt gaaattgaaa cattctagtg
     1801 agcctgagcc tatattttta ggaatgaagt ttaatatttt cctaaaatga gaaaaatata
     1861 tttggtaatg acttgtatct gtactttttt aatcaatcag gagcatctgt tctttaatat
     1921 actatattta cacttgctta gccagcaccc aggtgctttg ctgacaaaaa aagaaatcac
     1981 ctttctagat tcatttggag acgtaaagta agataggcaa atgaaaatac aacagaatat
     2041 tttaaaaata ttatataatt aaatcttttt atttaattaa agttttttct tattttaaa
//
