LOCUS       XM_006228899            3182 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WD repeat domain 88 (Wdr88),
            transcript variant X1, mRNA.
ACCESSION   XM_006228899
VERSION     XM_006228899.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006228899.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006228899.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3182
                     /gene="Wdr88"
                     /note="WD repeat domain 88; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:292809"
                     /db_xref="RGD:1560122"
     CDS             59..2944
                     /gene="Wdr88"
                     /codon_start=1
                     /product="WD repeat-containing protein 88 isoform X1"
                     /protein_id="XP_006228961.2"
                     /db_xref="GeneID:292809"
                     /db_xref="RGD:1560122"
                     /translation="MASPQVPRKALGDTRKGSGETRTGSEDTRTGSEETRTGSEETGR
                     GSEETRTGSKETRRGSEETRTGSEETRRGSEETGRGSEETRMGSKETRRGSEETRTGS
                     EETRRGSEETRRGSEETRIGSKETGRGSEETRIGSKETGRGSEETRRGSEETRRGSEE
                     TRRGSEETRRGSEETRIGSKETGRGSEETRIGSKETGRGSEETRRGSEETRRGSEETR
                     TGSGETRTGSGETRTGSGETRTGSGETRTGSGETREDSKDSRIIIDEMRKDTEEVQKS
                     SGKTRKSYVKVKKKRRKSTKQKGPEPKKLDFVKDSWQKGSLEIKKLDFIGDRWQTVSL
                     EPKMLGFVEDPWRKGSLEPKMLDFVEDPWQKGSLEPKMLDIVEDSWQKDSFEAMKLDF
                     AEYNWISIDNRRVSADSKRSSVDSKRSSVDSKRSSVDSKRGSIDSRKFSVDSKRDPVD
                     NKRDSVDSKRFSVDSKRFSVDSRRVSISSKRSSIDSKRSSVDSRKSSGGTLLDFSEDR
                     RSSGEDRDISSLARVRHSRVPWATLMRALGRFKLYLPHIRRYYNLSSRDPLALDKDFL
                     LPREKHLKATVQKSWGNQQPLSKIPYKTLTGHDQTVSSCHFCMDDTRLLSSSYDCTVK
                     LWDAEDGTVICDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRH
                     DTFVVCCKFSPNGKYVLSALDVNRGIYLMDPENITSVIHMKAQHQRSITSCCFDPDSQ
                     KVASVSMDKSIKIWDVTSRATLFTIQEAHTNAISDCCFTFSGHFLCTSSWDRTIKIWN
                     VHTGEFRNQGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLSL
                     KGHEDWVTDVAISNDKKWILSASKDNSMRLWNIEEIDKIPLVSENKRAMGLKVRQCRN
                     CDQLFSVLESDVYSQLSNTCLFCRREKKSLSSSSSSLSLSSLERLCI"
ORIGIN      
        1 gtgccaccgt tcccgctgcg cccgcggctg gcccgcggct ggcccggcag gctccaagat
       61 ggcctcaccc caagtccccc ggaaagcctt gggggacacc aggaaaggtt caggagagac
      121 taggacgggt tcagaagaca ctaggaccgg ttcagaagag actaggacgg gttcagagga
      181 gactgggagg ggttcagagg agactaggac gggttcaaaa gagactagaa ggggttcaga
      241 ggagactagg acgggttcag aagagactag gaggggttca gaggagactg ggaggggttc
      301 agaggagact aggatgggtt caaaagagac tagaaggggt tcagaggaga ctaggacggg
      361 ttcagaagag actagaaggg gttcagagga gactaggagg ggttcagagg agactaggat
      421 aggttcaaaa gagactggga ggggttcaga ggagactagg ataggttcaa aagagactgg
      481 gaggggttca gaggagacta gaaggggttc agaggagact agaaggggtt cagaggagac
      541 tagaaggggt tcagaggaga ctaggagggg ttcagaggag actaggatag gttcaaaaga
      601 gactgggagg ggttcagagg agactaggat aggttcaaaa gagactggga ggggttcaga
      661 ggagactaga aggggttcag aggagactag aaggggttca gaggagacta ggacgggttc
      721 aggggagact aggacgggtt caggggagac taggacgggt tcaggggaga ctaggacggg
      781 ttcaggggag actaggacgg gttcagggga gactagggag gattctaaag atagcagaat
      841 aattattgat gagatgagga aagacacaga agaggtccag aagagctctg gcaagaccag
      901 gaagagttat gttaaggtca agaagaagag gaggaagagt actaaacaga aggggcctga
      961 gcccaagaag ttggattttg tcaaggacag ttggcagaag gggtctcttg agatcaagaa
     1021 gttggatttt atcggggacc gttggcagac ggtgtctctt gagcccaaga tgttgggttt
     1081 tgtcgaggac ccttggcgga aggggtctct tgagcccaag atgttggatt ttgttgaaga
     1141 cccttggcag aaggggtctc ttgagcccaa gatgttggat attgttgagg acagttggca
     1201 gaaggactct tttgaggcca tgaagttgga ttttgccgaa tacaattgga tttcgataga
     1261 taacaggaga gtttcggcag acagcaagag gagttcggtc gatagcaaaa ggagttcggt
     1321 cgatagcaaa aggagttcgg tcgatagcaa gagggggtcg atagacagca gaaagttttc
     1381 cgtcgatagc aaaagggatc cagtcgataa caagagggat tcagtcgata gcaagaggtt
     1441 ttccgtcgat agcaagaggt tttccgtcga tagcagaagg gtttccatca gcagcaaaag
     1501 gagttcgatc gatagcaaaa ggagttcagt tgatagtagg aaaagctctg gcgggacttt
     1561 gctggatttc agtgaagaca ggaggagttc tggcgaggat agagacattt ccagtctcgc
     1621 cagggtgcga cacagtaggg tgccatgggc caccctgatg agagcactgg gtcgtttcaa
     1681 gctgtatctc ccacatatcc gtcggtatta taatctgtcc tcccgtgacc ccctggcctt
     1741 agacaaggat tttcttctgc cacgtgagaa gcacctcaag gcaacagtgc agaagtcctg
     1801 gggcaaccag cagcctctct ctaagatccc gtataaaact ctgactgggc atgaccaaac
     1861 cgtgagttcc tgccactttt gtatggacga cacaaggttg ctcagtagtt cttatgactg
     1921 cactgtgaaa ctgtgggacg ctgaagacgg aactgtgatt tgtgactttg aaccacgacc
     1981 caaagctcct gttttagaat gcagtatcac agctgacaac agaaggatcg tggcatcatc
     2041 ttatgataaa acggtgaggg cttgggacgt tgagacaggt cagcttctgt ggaaagtcag
     2101 gcacgacacc ttcgtagtgt gctgcaaatt ctctcccaac gggaagtacg tgctgtcagc
     2161 cttggatgtg aatcgcggga tctacctaat ggatccagaa aacatcacct ccgtgatcca
     2221 tatgaaagct caacaccaaa ggtccatcac ttcatgctgc tttgaccccg acagccagaa
     2281 ggtggcttct gtctccatgg acaagagtat caagatctgg gacgtcacat cccgagccac
     2341 gctgtttacc atacaggagg cacataccaa cgccatctca gactgctgct tcacctttag
     2401 tggacacttc ttgtgtacca gctcctggga cagaaccata aaaatctgga atgtccacac
     2461 gggggagttt cgaaaccaag gagcctgtgt gactctgatg aagggccacg agggctgtgt
     2521 gagctcctgc tgcattgcca gagacagctc ttttctcatt tctggtggat ttgacaagac
     2581 cgtggctatt tgggatgtag gaggtggcta ccggaagttg tcattgaagg gccacgagga
     2641 ctgggtgacg gatgttgcta ttagcaacga caagaagtgg atcctctcgg cttcaaagga
     2701 caactccatg agactatgga atattgaaga aatcgacaaa attcctttgg tttctgagaa
     2761 caaaagggcc atgggcttaa aggtcaggca gtgcaggaat tgtgaccagc ttttctccgt
     2821 cttagagagt gacgtttatt ctcaactctc caacacgtgt ctgttctgcc ggagagaaaa
     2881 gaagagctta tcatctagtt cttcgtcgtt gtcgttatca tcactggaga ggctctgcat
     2941 atgacgcctg ctgagccctt cgagtgcttg aggacagacc acctgctaca cagcccagcc
     3001 cgcagtgttc ttcagggctc tgttctgagc tcccctccca gaatgcacct gccagactga
     3061 ggcaagggcc aggcccccaa atagactgtc agcatggtct gcctctctgc ctaccgcaga
     3121 accctttcag aggggagcac tgttagtttt aatatagaat aaatcttgat tcctctggaa
     3181 aa
//
