LOCUS       NM_001105947             593 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus WD repeat domain 83 opposite strand (Wdr83os),
            transcript variant 2, mRNA.
ACCESSION   NM_001105947 XM_001065641 XM_213835
VERSION     NM_001105947.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 4, 2022 this sequence version replaced NM_001105947.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.3242862.1, CB757298.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840107, SAMN12840117
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-113               JAXUCZ010000019.1  39981507-39981619   c
            114-219             JAXUCZ010000019.1  39981292-39981397   c
            220-593             JAXUCZ010000019.1  39980247-39980620   c
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q11"
     gene            1..593
                     /gene="Wdr83os"
                     /gene_synonym="RGD1564058"
                     /note="WD repeat domain 83 opposite strand"
                     /db_xref="GeneID:288925"
                     /db_xref="RGD:1564058"
     exon            1..113
                     /gene="Wdr83os"
                     /gene_synonym="RGD1564058"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..417
                     /gene="Wdr83os"
                     /gene_synonym="RGD1564058"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein Asterix; PAT complex subunit Asterix"
                     /codon_start=1
                     /product="PAT complex subunit Asterix isoform 2"
                     /protein_id="NP_001099417.1"
                     /db_xref="GeneID:288925"
                     /db_xref="RGD:1564058"
                     /translation="MSTNNMSDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIF
                     SMCGLMLKALNLRRGDVLSAESSAHDAPMVMPPRKLCSQTPAHRRLSGLAFGCLHPPS
                     AAVLNLSECGLWAPS"
     exon            114..219
                     /gene="Wdr83os"
                     /gene_synonym="RGD1564058"
                     /inference="alignment:Splign:2.1.0"
     exon            220..593
                     /gene="Wdr83os"
                     /gene_synonym="RGD1564058"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attctcacgc cggaagcagc tgttctagcg gtgaaagaag gacggcgtgg tcttcagttt
       61 gctatgtcca ccaacaatat gtccgaccca cggaggccca acaaagtgct gaggtataag
      121 cctcctccga gtgagtgcaa tccggctttg gatgacccga ctccggacta catgaatctt
      181 ctcggcatga tctttagcat gtgcggcctc atgcttaagg ctctcaatct ccgccgtggt
      241 gatgtcctat ctgcagaatc ctcagcccat gacgccccca tggtgatgcc accgaggaag
      301 ctttgttccc agactccggc ccaccgtcgt ctctctggcc tagcctttgg ctgcctccac
      361 cctccctcag ctgctgtcct aaacttgtct gagtgtggtc tctgggctcc cagctgaatg
      421 gagggaagtg ggccctttct ttggggttct gcttctgctt tgacaaaggg ataaacctgc
      481 agacttccct tttactcctc ccctggccac tgttatgaga aacactgctc acatttctag
      541 ggattcactt gttttcttat tgaaaccaat tgatataaaa atttccactc tga
//
