LOCUS       XM_039098250            3839 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WD repeat domain 59 (Wdr59),
            transcript variant X1, mRNA.
ACCESSION   XM_039098250
VERSION     XM_039098250.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098250.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3839
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3839
                     /gene="Wdr59"
                     /note="WD repeat domain 59; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 19
                     ESTs, 1 long SRA read, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 54 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:690751"
                     /db_xref="RGD:1592213"
     CDS             143..3154
                     /gene="Wdr59"
                     /codon_start=1
                     /product="GATOR complex protein WDR59 isoform X1"
                     /protein_id="XP_038954178.1"
                     /db_xref="GeneID:690751"
                     /db_xref="RGD:1592213"
                     /translation="MAARWSSENVVVEFRDSQATAMSVDCVGQHAVLSGRRFLYIVNL
                     DAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAASSNQRVDLYKWKDGSGEVGTTLQ
                     GHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTRKPAVALSAVAGASQVKWNKKN
                     ANYLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVKF
                     WDYRQPRKYLNILPCQVPVWKARYTPFSNGLVTVMVPQLRRENSLLLWNVFDLNTPVH
                     TFVGHDDVVLEFQWRRQKEGSKDYQLVTWSRDQTLRMWRVDYQMQRLCANDILDGVDE
                     FIESISLLPEPEKTLHPQDTDHQPSLSHGEEDGNVTDVLAIKEDPPSSLLEERRSDQL
                     GLPQTLQQEFSLINVQIRNVNVEMDAADRSCTVSVHCSNHRVKMLVTFPAQYPNNAAP
                     SFQFINPTTITSAVKAKLLKILKDTSLQKVKRNQSCLEPCLRQLVSCLESFVNQEDSA
                     SSNPFALPNSVTPPLPTFARVTTAYGSYQDANIPFPRTSGARFCGAGYLVYFTRPMTM
                     HRAVSPTEPTPRSLSALSAYHTGLIAPMKIRTEAPGNLRLYSGSPTRSEKEQVSISSF
                     YYKERMSPRSARRRWSIQAINDFPKSRRWKSKREGSDSGNRPIKAAGKVIIQDVSCLL
                     PVHKSLGELYILNVNDTQETCQKNATSAMLVGRKDLVQVWSLATVATDLCLGPKSDPD
                     LETPWARHPFGRQLLESLLAHYCRLRDVQTLAMLCSVFEAQSRPQGLPNPFGPFPNRS
                     SNFVVSHSRYPSFTSSGSCSSMSDPGFNTGGWSIVSLAGRETEHISSPWGESSPEELR
                     FGSLTYSDPRERERDQHDKNKRLLDPANTQQFDDFKKCYGEILYRWGLREKRAEVLKF
                     VSCPPDPHKGIEFGVYCSHCRSEVRGTQCAICKGFTFQCAICHVAVRGSSNFCLTCGH
                     GGHTSHMMEWFRTQEVCPTGCGCHCLLESTF"
ORIGIN      
        1 gttgcggtca agtgaaaggc agggaacgag gcgtggccgg atttattagc tggctgtgtg
       61 gggcttacta acctagggag tctcgggtct tggggtcggg gtggagggtc gccgactggc
      121 accccacggt cgggcttgtg agatggcagc gcgctggagc agcgagaacg tggtggtgga
      181 gtttcgggac tctcaggcga ctgccatgtc tgtggactgt gttgggcagc atgcagtgct
      241 ttctggccgg agattcctgt acatcgtcaa tctagacgcc ccttttgaag gtcaccggaa
      301 gatctcccgc cagagcaagt gggacattgg agctgtgcag tggaatcctc atgacagctt
      361 cgcacactac ttcgcggcct cgagtaatca acgggttgac ctttataagt ggaaagacgg
      421 cagcggggaa gttggcacaa ccttacaagg gcacactcga gttatcagcg acttggactg
      481 ggcagtgttc gaaccagatc tcctggtcac cagctctgtg gacacctata tctacatctg
      541 ggatattaaa gacacaagga aacctgctgt tgcactgtcg gctgtagctg gtgcctccca
      601 ggtcaagtgg aataaaaaga acgctaacta ccttgccacc agccatgatg gtgatgtacg
      661 gatatgggat aagcgaaaac ccagtacagc ggtagagtat ctggcagccc atctctccaa
      721 gatccacggc ctggactggc acccagacag tgagcacatt ttcgccacct ccagtcaaga
      781 taactctgtc aagttctggg attaccgcca gcctcggaaa tacctcaata ttctcccttg
      841 ccaggtgcct gtctggaaag ccagatacac acctttcagc aacggcctag tgactgtgat
      901 ggtccctcag ctgcggaggg agaacagcct gctcctgtgg aatgttttcg acttgaacac
      961 tccagttcac acctttgtgg ggcatgatga tgtggtgctg gagttccagt ggaggcgaca
     1021 gaaggaaggg tccaaggact atcaactggt tacatggtcc cgggatcaga ccttgagaat
     1081 gtggcgagtg gattatcaaa tgcagaggct ctgtgccaat gacatactgg acggcgtaga
     1141 tgagttcatt gagagcatct ctctcttgcc ggaaccagag aagaccctac atcctcaaga
     1201 cacagatcac cagcccagct taagccacgg agaggaagat ggtaatgtga ctgatgtcct
     1261 agccataaag gaagatcctc ccagcagttt gctggaagag aggagatcag accaactagg
     1321 cctgcctcag actctgcagc aggagttctc cttgatcaac gtgcagatcc ggaatgtcaa
     1381 cgtggagatg gatgctgccg accggagctg cacggtgtct gtgcattgta gcaaccaccg
     1441 tgtgaagatg ctggtgactt tcccagcaca gtaccccaac aacgctgctc cttctttcca
     1501 gttcattaac cccaccacca tcacgtctgc cgtgaaggcc aagctgctga agatcctaaa
     1561 ggacacgtcc ctgcagaaag tgaagcgcaa ccagagctgt ttggagcctt gcctgcgcca
     1621 gcttgtctcg tgccttgagt cttttgtgaa ccaagaggac agtgcttcta gcaacccatt
     1681 tgcactccca aactctgtca caccaccctt accgacattt gcacgggtga ccactgccta
     1741 cggctcttac caggatgcca acattccctt tcctaggacc tctggggcca ggttctgcgg
     1801 ggcaggttac ctggtgtact tcacaaggcc catgacaatg caccgagccg tgtctcccac
     1861 agagcctact cctaggtctc tctcagccct gtctgcttat cacactggct tgattgcacc
     1921 gatgaagatc cgcaccgagg cccctgggaa cctgcgtttg tacagtggga gcccaactcg
     1981 cagtgagaaa gagcaggtct ccatcagctc cttctactac aaggaacgga tgtctcctcg
     2041 ctctgcccgg cgacgttggt ccatacaagc aattaacgac ttcccgaaat caaggcggtg
     2101 gaaaagtaag cgggagggct ccgactctgg caaccgaccc attaaggccg ctgggaaggt
     2161 catcatccag gatgtctcgt gcctccttcc tgttcacaag tccctgggag agctgtacat
     2221 attgaatgtg aacgatactc aggagacgtg tcagaagaat gctacttctg ccatgcttgt
     2281 tggaaggaag gatctcgtcc aggtttggtc actggctaca gtagccacag acctttgcct
     2341 tggtccgaag tctgacccag atttggaaac accttgggct cgacatccat ttgggcgaca
     2401 gctgctggag tccctactgg ctcactattg ccgactccga gatgttcaga ccttggctat
     2461 gctctgcagc gtgtttgaag cccagtcccg gcctcagggg ttaccaaacc cttttggccc
     2521 tttccctaat cggtcttcta attttgtggt gtcccacagt cgatacccca gctttacctc
     2581 ctcggggtcc tgctccagca tgtcggatcc agggttcaac accggtggct ggagcatagt
     2641 ttccttagca ggaagagaaa cagaacacat atcttcacct tggggggagt cttcaccaga
     2701 ggaactccgc tttgggagtc tgacctacag tgacccccgt gagcgggaac gagaccagca
     2761 tgataaaaac aaaaggctcc tggaccctgc caatacccag cagtttgatg actttaagaa
     2821 gtgctacgga gagatcctct accgctgggg tctgcgagag aagagagcag aagtgctgaa
     2881 gtttgtgtcc tgccctcctg accctcacaa agggatcgag tttggtgtgt attgcagtca
     2941 ctgccggagt gaggtccgtg gcacccagtg tgccatctgc aaaggcttca cgttccagtg
     3001 tgccatctgc cacgtggctg tgcgtggttc atccaacttc tgcctgacct gtggacacgg
     3061 cggccacaca agccacatga tggaatggtt ccggacccag gaggtgtgtc ccactgggtg
     3121 tggctgccac tgcctgctgg agagcacctt ctgaagttaa atggacgatg acacttccag
     3181 aaatcccaga ggactccata aatgccggag aaggctctct gctgctgtgg tggaaagttc
     3241 tagaaccagg gtcatcctct gatctaggat ggacaatagt ccggtcacag cttctgctcc
     3301 cgagcctttg tgttcccttc tctgactgtc cggtcatgga tggtgccaga agggagggag
     3361 gcacacacag ctgaccctcc tgcactgtct gttgagttta cagtggaggt tttcatgagg
     3421 aaaagtacct gtttccagag ccaccagagc cagcatcagc cttcaagatg ctgtccttga
     3481 agcaggactg ggctctccag atgccagtac gaagacacac accagctgca acacggtctc
     3541 cggagctaaa agacactggc tcttagtgtc acagtaagag ctgtggggtc tgtgacttta
     3601 ggagatgaca ccttaatgat agccttataa agtacaatac taaaatgtaa tatatgacgg
     3661 acatacatac gtccagcatt cttttccttg gtacagggct tgaactcggt gccttgcaca
     3721 tactggttag cagccatacc actgagttac atttcagccc ctaagaattc tcaagataga
     3781 tattttctgt ttctctccat ctgctttact ttgaccaata aaagtttata cttgtttga
//
