LOCUS       XM_039103712            5795 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WD repeat domain 49 (Wdr49),
            transcript variant X2, mRNA.
ACCESSION   XM_039103712
VERSION     XM_039103712.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103712.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5795
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5795
                     /gene="Wdr49"
                     /note="WD repeat domain 49; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499640"
                     /db_xref="RGD:1564622"
     CDS             316..3477
                     /gene="Wdr49"
                     /codon_start=1
                     /product="WD repeat-containing protein 49"
                     /protein_id="XP_038959640.1"
                     /db_xref="GeneID:499640"
                     /db_xref="RGD:1564622"
                     /translation="MLKRGEVIRSYPDVALGLNMASQSESAHLENTEVKTASEHYGTD
                     LVENKLSVEDFVKIQQVFESQDPSQTICMPREVFVQKMTETVGWGTKEEYGELFDKVD
                     VSQDGFIDWDKLTSFILLSLSERDERAKATVIPQWKDLEFLPGKHKDTIQKIVFLKSS
                     SRYLTISKEGLLGIWGENLKLQETLPITSDAIKLKHLWVTGLVSLENVNKIAVAFTSK
                     EICFYDLLSKEEFPCQYKLQGLQGAPICMDYWYDPFDPKDSILSFGDITGKVQAIAFT
                     AAVISLFERPANACDDEEATMTIDWAELVSGCHKCCHVLQHTTHHGDWVRQVTYNASL
                     DAFISSTMSSTNTVVLAWREKSKKLLKMTSFNIAQGIHAFDYHSRLNLIATAGINNKV
                     CLWNPYVLSKPVGVLWGHSASVIAVQFFAERKQLFSFSRDKVLRLWDIQHQLSIQRIA
                     CSFPKSQDFRCLFHFDETHGRLFISFNNQLALLAIKNEASKRVKSHLKAVSCVLYNSH
                     LKQVISSDVGSTVSFWMIETGQKIKQFAGCHGNAEISTMTLDANKTRLLTGSTDGTVK
                     VWDFNGYCHHTLNVGQDGVVEISQILVLKKTILVVGWERAVTVFRPHNFNQFFIQSEE
                     WKGGVRHQDDILCAAFLPPQTLATGSYDGEIVLWNNNTENAHHVLHPGYQRQLASMLD
                     LEAQKLNAGRSRATHCVADQTNQAALNVKIDTEGNNAVMRLCFLEARKTNAATGGANL
                     VSCGASGYVRFWDIFKKVLLAEFLAHAGVGSIVMSTDKLNQYLATGDPDGCLKIWNIE
                     EYCTNSTDSKVTQTPTLLRSLQPHEDRISSLEMCESGGHLLIISSSADCSVCVTGLSN
                     APALIFGQASRWNIENYFSLPKRDTNLVESKIPEENMEINPLFSEEESSLDSTEESLL
                     TEENRDNSTHTTRSSEEMNFSLKCKRRNIFKNKTHKPYYGEILQKSTSTFGSLSLRNL
                     EELPEVKKPAFLQDPDRYFKEEPEEDESQIPELPLLSETLKAVFDEKSLFPKELLYRE
                     RQDKPLCQERNGETKIKRNKKRL"
ORIGIN      
        1 acggggtggg aaagggaaag tcagctggct tgatattggt tgccaggaaa cacacaaaag
       61 caccaggaca gagaaaacaa accactccat attgctgggt aagtggcctt tggttgcaag
      121 aacttcactg agtgagaggg actttgaagc tgtgcacctg tgtcatgaac acccacagat
      181 gaaaaactgc agctgaaaag gatgaaagca gtaaagggtt ggaaatttca ttttaaattg
      241 tattctaagt tggactccat ttcaaaggca tatattgaag caacaacaag aaaaacaaac
      301 acagaatgtt gaagcatgct gaagaggggt gaagttatta ggagctaccc tgatgttgca
      361 cttggtttga acatggcgtc ccagtcagag tcagcacacc ttgagaacac agaagtaaag
      421 actgcaagtg aacactatgg tacagacctc gttgagaaca agctcagtgt ggaggatttt
      481 gtgaagatac agcaggtctt tgagtcccaa gatccgagcc aaaccatttg tatgcccaga
      541 gaagtatttg tacagaagat gacagagact gtgggttggg gcacaaaaga agaatatgga
      601 gaactctttg acaaagtgga tgtgtcccag gatggcttca ttgactggga caagctgact
      661 tcatttatac tgttatcact ttctgagaga gatgaacgag caaaggcaac agtcattccc
      721 caatggaagg accttgaatt cctcccagga aaacacaagg acaccattca gaaaatagtt
      781 ttcttaaaaa gttcaagtcg ttacttaact attagcaaag aaggcttact aggaatctgg
      841 ggagagaact tgaagttgca agaaacactt cccatcactt cagatgctat caaactcaaa
      901 cacctgtggg tgacaggttt ggtttctctg gaaaatgtta acaagatagc agtagctttt
      961 acaagcaaag agatttgttt ctatgatcta ctatccaaag aagaatttcc ttgtcaatac
     1021 aaactccaag gccttcaagg agctcccata tgcatggatt attggtatga tccttttgat
     1081 ccaaaagact ccatcctttc atttggggat ataactggaa aggtgcaagc aattgctttc
     1141 acagcagcag taatttccct ctttgaacga cctgctaatg catgtgatga tgaagaagcc
     1201 accatgacca ttgactgggc agagctggtc tctggatgtc acaagtgttg tcacgtgtta
     1261 cagcacacaa ctcatcatgg agactgggtc aggcaagtta cttacaatgc ttctttagat
     1321 gctttcattt ccagtacaat gagcagtaca aatactgtgg tgctggcatg gagagaaaag
     1381 tcaaaaaaac tccttaaaat gacatctttc aacattgcac agggcattca tgcttttgat
     1441 taccactctc ggctcaattt aattgcaact gctggcatca acaataaagt ttgcctttgg
     1501 aatccctatg tcctgtctaa accagttggt gttctatggg gccattcagc cagtgtcata
     1561 gcagttcaat tctttgctga gagaaagcaa cttttcagtt tttccaggga taaagttttg
     1621 agactctggg atattcaaca ccagctgtcc attcaaagga tagcttgttc tttccccaaa
     1681 agtcaggact tcaggtgcct tttccacttt gatgaaaccc atggacgact ttttatctcc
     1741 ttcaataatc agcttgcctt gctggccata aaaaatgaag ccagcaagag ggtgaagagc
     1801 catttgaagg cagtcagttg tgtcctttac aattcgcacc tgaaacaggt aatcagctct
     1861 gatgtggggt ctactgtgtc cttttggatg atagaaactg ggcagaaaat caaacagttt
     1921 gctggttgtc atggcaatgc agagatcagc accatgaccc tggatgcaaa taagacaagg
     1981 cttttgactg gcagcaccga tgggactgta aaggtatggg actttaacgg atattgtcac
     2041 catactctta atgttgggca agatggagtt gtggaaattt cacagatcct ggttcttaag
     2101 aagaccatcc tggttgtggg ctgggagaga gcggttactg tatttcgacc tcacaacttt
     2161 aatcagtttt tcatccagtc tgaagagtgg aaagggggag tccgtcacca agatgacatc
     2221 ttgtgtgctg catttttacc cccgcaaact cttgctacag ggagctatga tggagagatt
     2281 gttctgtgga ataacaatac agaaaatgca caccatgttc ttcaccctgg ttaccagagg
     2341 cagctagcat ccatgctaga cctagaagcc caaaagctta atgctggcag aagccgtgca
     2401 actcactgtg tggcagacca gaccaaccag gctgccctaa atgtcaagat tgacacagaa
     2461 ggtaataatg ctgttatgag actttgcttc cttgaagcaa ggaaaaccaa tgcagccaca
     2521 ggaggtgcta atctggtgtc atgtggagca tctggttatg tcaggttctg ggatatattt
     2581 aagaaagtac ttctggctga atttttggct catgcaggag ttggatccat tgttatgtct
     2641 actgataaac tgaatcaata ccttgccact ggagatcctg atggatgctt gaaaatctgg
     2701 aacatagagg agtattgtac taattccact gatagcaaag tcacccagac tccaactttg
     2761 ctcagatcac ttcagcctca cgaggaccgg ataagctcct tggagatgtg tgagtctggt
     2821 ggtcatttgc ttattatttc ctcctcggca gactgcagtg tctgtgtgac tggactttcc
     2881 aatgctcctg ccttgatctt tggtcaggca agtcgttgga atattgaaaa ctacttttct
     2941 cttccgaaga gagatactaa tttagtagaa agtaagattc cagaggaaaa catggaaata
     3001 aaccctttat tctctgaaga ggagtcaagc ttagactcaa cagaagagag tctgctgact
     3061 gaggaaaaca gagacaattc aacacacact acaagatcat cagaagaaat gaatttcagt
     3121 ctaaaatgta agaggagaaa tatctttaag aacaaaacac ataaacctta ctatggtgaa
     3181 attttacaaa aatcaaccag cacatttggg tccttaagcc ttagaaacct ggaagagctg
     3241 ccggaagtga agaaacctgc atttcttcaa gacccggaca gatactttaa ggaagagccc
     3301 gaagaggatg aatcccaaat tccagagctt cctttgctct ccgagacttt gaaagctgta
     3361 tttgatgaga aaagcctatt ccccaaagaa cttctctatc gtgaaagaca agacaagcca
     3421 ttgtgtcaag aaagaaatgg tgaaacaaag ataaagcgaa acaagaagcg attatgatga
     3481 aataacaggc attcgctgtg acacagagca ctcctgagga tgcagagagc ccgggttccc
     3541 actgtctctg ttacttgaag tatgaacttc aagaaacttt gtcttcagac tctgtgtttg
     3601 tgctgagctc actcacactt ctcagccttg tttaatccaa gaaggaacat aaaaatgatt
     3661 ggtctaaaga acaacaatgc caattggtat tttctatttc agaagaaagt atattaccta
     3721 atcgtcccta taattgacct ggtagacaat agatgtgatt tattataaaa tatttattaa
     3781 aacatgaaat aaactaacca agtgataaaa attcattaaa attgtttatt gtaatgcttc
     3841 ctccctttat aatttggttt tccacaacaa ttttgatact gatatttaga tattgacaat
     3901 agcagcctat gttattcttt taaaatatac ttttatttta gctgtacata tttatggtgt
     3961 tttatgttta aatttggtac actccagaac tagttggtat tatcaacatt tatgattaat
     4021 taaatatttt caagtatttt acatttgatt aacatgtggt cattgcacaa attaatgtat
     4081 ctgtagtgtg gttaatattt taacacatat atctaatatg tagtagtcaa accagaatta
     4141 ttgctatttc ctaataatca ttttagattt atgctcacta ttttatgccc ttagtgggaa
     4201 ttggtgagag tgataagctt ctgtacttga aagttgtact gactggtttt gtgtgttaac
     4261 ttgacacaag ctggagttac cacagagagt agtttccctt taggaaatgc ctcatgcgaa
     4321 atgtaaggca ttttctcaag tagtgatcaa tggtgggagg actcattgta ggtgatgcca
     4381 tacctgggtt ggaatttcta agttctatag aaaagcaagc tgagcaaacc agaggaagca
     4441 acccagtaag aagcctccag gtcctgtgtc caggttcctt ccctgtgtga gttccagtcc
     4501 tgacttcctt tgatgatgaa cagcaatatg aaagtgtaag ctaaataaat cttttcctct
     4561 ccaacttgct tcttgatcat agtgttttgt gcaggaatag atatactggt taagacaaaa
     4621 gtccagtaac ataccacagc caagcaggta acagccctga aagagaagca aaatgcctgg
     4681 tcctttgtaa aaacatcact gtccaaaaga gcccactagg caacatttag tttggaaact
     4741 tcctgactct ccttgtgcaa tgttatgttt atatacatca tcttccagga gaccaatatt
     4801 attgtgttgt tttttgttgt gtcctttata aaaatataat aacttcattt ccatgggttc
     4861 agtttatttg tatatgttca tattttaaag aggccttaaa atagttggac tttaaaactt
     4921 tgcaataaca cattagtaaa ttattaatct atagtggata attttgatcc acaaccaaag
     4981 cattcaatct atttaaatct cataagcatt cctttcaaat ttatctattt taatgttgaa
     5041 atgtgacata ttattccatt atgagattgc ctactgataa aatgtcagtg ttaggattat
     5101 aattctggtc tgttttcttc tcagattaag gcatttgtga cttatgattc tttttattac
     5161 tttacaggat atatttaatg atgtgggctt taataataga tttgcaagca tcattagagc
     5221 aaacattttg gtttgggaat gggaagatgt ataacagttt gctcaggaca gaattatttt
     5281 ctatttgtgt ttatgtgaat agtgagtcaa atataaccca tcatttcaaa gtcagaacaa
     5341 tgatttatga gccataggtt gatgatagta cagcaaacag aaatcagaaa cacattccca
     5401 gaaatgcaaa ggattattca gatgtaaaag agaaataata aagattccaa acccttcgtg
     5461 atggcccttt tctccacata cattcttctc tccactcatg agagcctgca tccatctagc
     5521 catcagtcca gttatagaag ttagtccagt cgttatcccc ctcccattct gccctctgac
     5581 agttcctcct cccccatctc caagaagatg ttttaacccc ctatatgagc tgtttttgaa
     5641 gagattaata caatatattc tgaaccatat agagtgagtt tctctgtgtt gatattatgt
     5701 tgacatagca ctgaatagat gctttataga ttagctcaaa tgctcgaatt accttaaatg
     5761 cacagaacac atgaaactca agaaggatga ccaaa
//
