LOCUS       XM_006233155            4229 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WD repeat domain 47 (Wdr47),
            transcript variant X5, mRNA.
ACCESSION   XM_006233155
VERSION     XM_006233155.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233155.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006233155.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4229
                     /gene="Wdr47"
                     /gene_synonym="RGD1309181"
                     /note="WD repeat domain 47; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 38 ESTs, 4 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 63 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310785"
                     /db_xref="RGD:1309181"
     CDS             315..3101
                     /gene="Wdr47"
                     /gene_synonym="RGD1309181"
                     /codon_start=1
                     /product="WD repeat-containing protein 47 isoform X3"
                     /protein_id="XP_006233217.1"
                     /db_xref="GeneID:310785"
                     /db_xref="RGD:1309181"
                     /translation="MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGL
                     FSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKKRFRYIILKQKFLEALCVNNAMS
                     AEDEPQHVRFLFLKLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFK
                     DWNPSTARVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFC
                     QSKATGEEITESEVLLGIDLLCGNGCDDLDLSLLSWLQNLPSSVFSCAFEQKMLNIHV
                     DKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGLTCGLTSH
                     DKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLLLENTECHSIYEESPERSDTPVETQ
                     QPVSIEPMCQGSGLEKEPANGAQNPVPAKQQEKNELRDSTEQFQEYYRQRLRYQQHLE
                     QKEQQRQIYQQMLLEGGVNQEDGPDQQQNLTEQFLNRSIQKLGELNIGMDSLGNEVPV
                     LNQQCLGSKNSGSNNSSVTSFSSPPQDSSQRLTHDTSNIHTSTPRNPGSTNHIPFLEE
                     SPCGSQNSSEHSVVKPSPGDSSGSLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFH
                     PSGSLYAVGSNSKTLRVCAYPEKLDTSAHDGPKQPVVRFKRNKHHKGSIYCVAWSPCG
                     QLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEGPESGGAILISAG
                     AGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCV
                     RVVGTTFHGTGSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRS
                     VRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQLPLMVVGEHKDKVIQCRWHTQDLSFLS
                     SSADRTVTLWTYSG"
ORIGIN      
        1 cgaggagggg tcctgaggcg gccccaggga cgagcagtga ttggctgcag ctggcggctg
       61 gagctccgtt ccagcggcgc ttgacaaccg cagtctgtgg agcggagcgg tcggaggcgg
      121 gataggggcg gacgcgagaa ggaccggctg acgagctgat ggattgacgt gcgggctgct
      181 gagcccagac cgccgccctc gcgctcgcgc cttagcctgg aattggctgc cttggggccc
      241 tggccgccgg cctctccgcc gcgttttcct ccgccgcttc tgccggctcc gcccggagcc
      301 ctcaggctag caatatgact gctgaagaaa ccgtgaatgt aaaagaagtt gagatcatta
      361 agctgatttt ggacttcttg aattcaaaga agcttcacat tagtatgctg gcgcttgaga
      421 aggaaagcgg agtcataaat ggtctatttt cagatgatat gcttttcctg aggcagctta
      481 ttctggatgg tcaatgggat gaagttcttc agttcattca gcctctagaa tgtatggaaa
      541 aatttgacaa aaaaaggttt cgttatataa tcctgaagca gaagtttcta gaagctttgt
      601 gtgttaacaa tgcaatgtct gcagaagatg agccccagca tgtaaggttt ttattcctga
      661 agttggaatt taccatgcag gaagctgtcc agtgtctaca cgctctcgag gagtactgcc
      721 cttctaaaga cgattacagc aagctctgcc tgctcctcac cctgcctcgt ctgaccaacc
      781 atgctgaatt taaggactgg aatcccagca ctgcccgggt ccactgcttt gaagaggtct
      841 gtgtcatggt cgcagagttc atccctgctg acaggaagct aagcgaggct ggttttaaag
      901 caagtaacaa ccgcttattc cagctcgtaa tgaagggcct actttatgaa tgctgcgtag
      961 aattttgtca gagtaaagca actggtgaag aaattacaga aagtgaagtc cttctcggca
     1021 tcgacctctt atgtggcaac ggttgtgatg atttagatct aagtttattg tcttggcttc
     1081 agaatctccc ttcctctgtc ttttcttgtg catttgaaca gaaaatgctt aatattcatg
     1141 ttgacaagct cctgaagcct actaaggctg catatgctga tctgctgact cctcttatca
     1201 gcaaactgtc tccctaccct tcatctccaa tgagaagacc tcagtcagct gatgcctata
     1261 tgactcgctc tctcaatcct gctttggatg gcctcacatg tggattaacc agtcatgata
     1321 agaggatctc agatcttggg aacaaaactt ctccaatgtc acactccttt gctaacttcc
     1381 attacccagg ggtacagaac ctcagcagaa gtcttctgct tgagaataca gagtgtcata
     1441 gtatctatga agaatctcct gagcgaagtg atacccctgt tgagacccag cagcctgtga
     1501 gcattgaacc catgtgccag ggttcggggt tagagaaaga gcctgcaaat ggagcacaga
     1561 acccagttcc agctaaacaa caagaaaaaa acgagcttcg agattctact gaacaatttc
     1621 aagaatatta taggcaaaga ttgcgctatc agcagcatct cgaacagaag gagcaacagc
     1681 ggcagatata ccagcagatg ttacttgaag gaggtgtgaa ccaagaggac ggtcctgatc
     1741 agcagcagaa tcttactgag caattcctta ataggtctat tcaaaagctt ggcgaactaa
     1801 atattggaat ggacagtctt ggcaatgagg tgccagtact caaccaacaa tgcctcggga
     1861 gcaaaaacag tgggtcaaat aattcctctg tcactagttt cagttcacca ccccaagatt
     1921 ccagtcagag gttaacacat gatacttcta atattcacac aagtactcct cgtaatcctg
     1981 gatcaacaaa tcacatccct ttccttgaag aatcaccttg tggaagccag aactcatcag
     2041 aacattctgt tgttaagcca tcacctggag attcatcagg gagtctatca aggtcaaaag
     2101 gggaagagga tgacaagtca aagaagcagt ttgtttgtat taatactcta gaagacacac
     2161 aggctgttag agcagtggcg tttcacccaa gtggtagttt atatgccgtt ggttcaaatt
     2221 caaaaactct gagagtgtgt gcctatccag aaaaattgga cacaagtgca catgacggtc
     2281 ctaagcagcc agtggtacga tttaaaagaa acaaacatca taaagggtct atttattgtg
     2341 tggcttggag cccgtgtgga cagttactag caacaggatc aaacgacaaa tatgtgaaag
     2401 tgctgccctt caatgcagag acttgtaatg caacaggacc agacctggaa tttagcatgc
     2461 atgatgggac aattcgagat ctggccttta tggaaggccc agaaagtggt ggagctattt
     2521 taataagtgc tggagcagga gattgcaaca tttatacaac agactgtcag agaggacagg
     2581 gtcttcatgc tttgagtgga cacactgggc atattttagc actttatacc tggagtggat
     2641 ggatgattgc atctggttcc caggataaga ctgttagatt ctgggatctt cgtgtaccaa
     2701 gctgtgttcg tgtggttggc acaacatttc acggaactgg cagtgcagtg gcatctgtgg
     2761 ctgtggatcc cagtggccgt ctcttagcta caggtcagga ggactccagt tgcatgctgt
     2821 atgacataag aggaggcaga atggtccaga gttaccaccc tcactccagt gacgttcgct
     2881 ctgttcggtt ctctcctgga gctcactatt tgctgacggg ctcttatgac atgaagataa
     2941 aggtgacaga cctgcaagga gacctcacca agcagcttcc tctcatggtg gtgggggagc
     3001 acaaggacaa ggtgattcag tgcagatggc acacccagga tctttccttc ctttcgtcct
     3061 ctgcagacag aactgtgacc ctctggactt acagtggcta gaggccatcc tgcattgtct
     3121 atgcagtgaa agcacagaga ctcgagacta ctgaactgtt aggattacag gcttgaagaa
     3181 cgtatactgc cccggagaga gtttaacccg aggaagcccc ttattaccat gtcctatgaa
     3241 cagaaggtgt tgggtggtgg ttttcagtct tccatgtgtg ctcatgctgc tgtgttgttt
     3301 ccttgccaaa gtctgcagaa gagctcttac gttgttggtg tgcacgccaa gtcatggttc
     3361 aggatgggtt tgtggtttat tattaagtgc actccttggg tgttaaccca gataacagtt
     3421 ttatactcac actgaaatgg aattataatt taagtaattg ttacacataa gagaaccaga
     3481 ttttccccca gatgagacat aggtattcag gaatgacttt gctcttgtca caatccatac
     3541 tgtatcacgt gtcttctagt cgtcagggtt tggtaagtct ccaattttac atgatcatct
     3601 ttgcataggg ctcaccacag agtctccagg tgaaaggaga actgctttct cttaacccag
     3661 gggtgcactt gctaatttgt cacatcattt tgtttcaggc taaaaggtaa taactatttt
     3721 gctttgagaa cttgttgact tcaatttttt gaatgcacaa gatacctccc ttccaaactg
     3781 tagaagcaga gcggcagcag ttacatggaa ccatattcca tggtagggtt aacttaccgg
     3841 gtaacatttt cctcttaaaa attaaagact ttgccatgac cctagcatgg cttgaaaagc
     3901 tatgtttgca tgataattta aaatggaaaa ctgaaacttt gcactccata agcttatttg
     3961 ggtttttctt gcacagtttt gtgtaatgag gaataatgat tttatttgta cagtactata
     4021 tatcctaaca ttttatgtat ctttattttc atattgttca gtattttact ttaagttatt
     4081 aaataggcta ctttatttat ttcagctgca gtggtattga ctgtctgtgc actatatgta
     4141 gcaagcattt taaatctata gtacacaagt gggagggtag aagtgtaact gtgcttttta
     4201 tttcaataaa gacatcttga cacccaaaa
//
