LOCUS       NM_001100823            4020 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus WD repeat domain 44 (Wdr44), mRNA.
ACCESSION   NM_001100823 XM_001061437 XM_343761
VERSION     NM_001100823.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Mammoto,A., Ohtsuka,T., Hotta,I., Sasaki,T. and Takai,Y.
  TITLE     Rab11BP/Rabphilin-11, a downstream target of rab11 small G protein
            implicated in vesicle recycling
  JOURNAL   J Biol Chem 274 (36), 25517-25524 (1999)
   PUBMED   10464283
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On or before Aug 29, 2012 this sequence version replaced
            XM_343761.5, XM_001061437.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.65995.1,
                                           SRR26360194.1304290.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-293               JAXUCZ010000021.1  119287142-119287434
            294-327             JAXUCZ010000021.1  119320384-119320417
            328-402             JAXUCZ010000021.1  119327949-119328023
            403-1048            JAXUCZ010000021.1  119338147-119338792
            1049-1179           JAXUCZ010000021.1  119339547-119339677
            1180-1275           JAXUCZ010000021.1  119340656-119340751
            1276-1412           JAXUCZ010000021.1  119342909-119343045
            1413-1496           JAXUCZ010000021.1  119343748-119343831
            1497-1603           JAXUCZ010000021.1  119356093-119356199
            1604-1755           JAXUCZ010000021.1  119359451-119359602
            1756-1894           JAXUCZ010000021.1  119361375-119361513
            1895-1959           JAXUCZ010000021.1  119363820-119363884
            1960-2073           JAXUCZ010000021.1  119368686-119368799
            2074-2196           JAXUCZ010000021.1  119374713-119374835
            2197-2388           JAXUCZ010000021.1  119379076-119379267
            2389-2490           JAXUCZ010000021.1  119379440-119379541
            2491-2606           JAXUCZ010000021.1  119385599-119385714
            2607-2734           JAXUCZ010000021.1  119386717-119386844
            2735-2869           JAXUCZ010000021.1  119388288-119388422
            2870-4020           JAXUCZ010000021.1  119391090-119392240
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq34"
     gene            1..4020
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /note="WD repeat domain 44"
                     /db_xref="GeneID:246152"
                     /db_xref="RGD:727965"
     exon            1..293
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     CDS             217..2964
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /note="rabphilin-11; WD-containing protein
                     Rab11BP/Rabphilin-11"
                     /codon_start=1
                     /product="WD repeat-containing protein 44"
                     /protein_id="NP_001094293.1"
                     /db_xref="GeneID:246152"
                     /db_xref="RGD:727965"
                     /translation="MASESDTEEFYDAPEDVHLGGSYPVGSPGKVGLLSFKETKNTGN
                     KAGNESPVQELRQDVSKKIIECIIEESQKVLQLEDDSLDSKGKGLSDQATASHSVAGT
                     EFSNIPGLLAIQHELQQGSRKADSQNAAEETELETQKCFPSDNNCEKSEKTEDETNNL
                     TEVSSADQLDASKLETEILNKEAVEVKEGDVVNPASSDALSTKDFAAVEEVAPAKPPR
                     HLTPEPDIVASTKKPVPARPPPPTNFPPPRPPPPSRPAPPPRKKKSDLEFEALKTPDL
                     DVPKDNIASDSLLTTNMASESTVRDSLPSLDLASATSGDKIVTAQENGKAPDVQTVAG
                     EVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLSLAEEKLPTGINPLTLHIMR
                     RTKEYVSNDATQSDDEEKLQSQQTDTDGGRLKQKTTQLKKFLGKSVKRAKHLAEEYGE
                     RAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDL
                     SGEHMGAVWTMKFSHCGRLLASAGQDNIVRIWALKNAFDYFNNMRMKYNTEGRVSPSP
                     SQESLSSSKSDTDMGVCSGTDEDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLL
                     SSSMDKTVRLWHISRRECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDK
                     KVALWNEVDGQTKLITAANFCQNGKYAVIGTYDGRCIFYDTEHLKYHTQIHVRSTRGR
                     NKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQIKASFSH
                     DFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSL
                     MLSLDVQSEKLEGIDKYEDAEVLDNTSTGIVKTDNTEVLLSADFTGAIKVFINKRKTV
                     S"
     exon            294..327
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            328..402
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            403..1048
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1179
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1275
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1412
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1413..1496
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1603
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1604..1755
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1756..1894
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1895..1959
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            1960..2073
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2074..2196
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2197..2388
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2389..2490
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2491..2606
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2607..2734
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2735..2869
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
     exon            2870..4020
                     /gene="Wdr44"
                     /gene_synonym="Rab11BP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacctcggg cagtcgcttt gcaggtcata cccttagccc agcaactgag ggtggtcccc
       61 tgtccctaac cgacttctca ctccacgtca tctgtgccct cttcagagtc gcctgggacc
      121 cacctctcta cactcttaac tgacgaggag gagacgctcg gaatcaccct ttctctaggc
      181 ggagccggcc ccctcacccg cgggtgtgtc ctataaatgg cgtcggaaag cgacactgag
      241 gaattctatg atgcccctga agatgtgcac ctggggggca gctatcctgt ggggtctcca
      301 ggaaaagttg gacttttatc attcaaggaa acaaagaata caggaaacaa agctggaaat
      361 gagtcccctg tacaagaatt gagacaagat gtatctaaaa agataattga atgtattatt
      421 gaggaaagtc agaaagtact acaattggaa gatgactctt tggattccaa aggaaaagga
      481 ctttctgatc aggccactgc tagtcattct gtggctggga cagagtttag taacatacct
      541 ggactattag ccatacagca tgaactacaa caaggttcca gaaaggcaga cagtcagaat
      601 gcagctgaag aaactgaact agaaacacaa aaatgttttc cttctgataa caactgtgag
      661 aagagtgaga agacagaaga tgaaactaat aatttaactg aagtaagttc agctgatcag
      721 cttgatgctt ctaaactaga aactgaaata ttgaacaagg aagcagtgga agtcaaagaa
      781 ggtgatgttg taaatcctgc atcctcagat gctctatcta ctaaagattt tgctgctgtg
      841 gaagaagtgg ctcccgccaa acccccaagg caccttactc cagaacctga tatagtagcc
      901 agtacaaaga agcctgttcc tgcacgccca cccccaccaa ctaatttccc acctcctaga
      961 ccgccacctc catctcgacc tgcaccacca ccaagaaaaa agaaaagtga cctggagttt
     1021 gaggctctta aaacacctga tctggatgta cccaaagaca atattgcatc tgattctctg
     1081 ctaactacaa atatggcttc agaaagtaca gttagagatt ctctgccttc tctcgattta
     1141 gcaagtgcta ccagtggaga taaaatagtt actgcccagg aaaatggaaa agcacctgat
     1201 gtgcagacag tagcaggtga agtgatgggc cctcagagac ctagatccaa ctctggaaga
     1261 gagcttactg atgaggaaat tttagccagt gtaatgatta agaacctgga tactggagaa
     1321 gaaatacctt taagtcttgc tgaagagaag ttgcccacag gtattaatcc tctcaccctg
     1381 cacatcatga ggaggacaaa ggagtatgta agcaatgatg ccacacagtc agatgatgaa
     1441 gaaaagttac agtcacaaca aacagatact gacggtggaa ggttaaaaca gaaaacgact
     1501 caactaaaga aattccttgg aaaatcagta aagagagcaa agcatcttgc tgaggaatat
     1561 ggtgaacgtg ctataaataa agttaaaagt gtaagagatg aagtgtttca tactgatcaa
     1621 gatgaccctt catcaagtga tgatgaagga atgccatata caagaccagt aaaattcaag
     1681 gcagcgcatg gtttcaaagg accttatgat tttgatcaga tcaaagtggt acaagatctt
     1741 agtggtgaac acatgggagc tgtttggacc atgaaatttt ctcactgtgg ccggttactt
     1801 gcctcagctg gacaagacaa tatagtgaga atatgggctt taaaaaatgc ttttgactat
     1861 ttcaacaata tgcgaatgaa atacaatact gaaggacgtg tgtcaccttc accatctcag
     1921 gaaagtctaa gttcatcaaa atcagataca gacatggggg tatgtagtgg aactgacgaa
     1981 gacccagatg acaaaaatgc accttttcgg caacgaccat tttgcaaata taagggacat
     2041 actgctgatc tccttgatct ttcgtggtct aaaaactact ttctgctctc ttcttctatg
     2101 gataaaactg tcaggttatg gcacatttct agaagagaat gcctttgctg ttttcaacac
     2161 atagattttg tcactgccat cgctttccat ccaagagatg acagatattt tctcagtgga
     2221 tcattggatg gaaagctccg cctatggaac atacctgaca aaaaagtggc tttatggaat
     2281 gaagtagatg gtcagacaaa gttgatcaca gctgccaatt tttgtcagaa cggcaaatat
     2341 gcagtaattg ggacatatga tggtagatgt attttctatg atacagagca cttgaaatac
     2401 catacacaaa tacatgtacg atctactaga gggcggaaca aggttggaag aaaaattact
     2461 gggattgaac ctttacctgg ggaaaataag atattggtaa cctcaaatga ctccagaatc
     2521 agactgtatg atctgagaga cctatcactg tccatgaagt ataagggtta tgtcaatagc
     2581 agcagccaga tcaaagcaag tttcagccat gactttactt acctcgttag cggttcagaa
     2641 gataaatatg tttatatctg gagtacttac catgacctaa gcaagtttac ttcagtcagg
     2701 agagatcgta atgacttctg ggaaggtatt aaagcacata atgcagttgt tacgtcagcc
     2761 atctttgctc caaacccaag tttgatgcta tccttggatg tgcagtctga aaaattggaa
     2821 gggattgata aatatgaaga tgctgaagtt ttggataaca catctactgg tatcgtgaag
     2881 acagataaca cagaagttct tctctctgct gattttactg gagcaatcaa agtgtttatt
     2941 aacaaaagga aaactgtatc ttaatttgaa attatattta aaataaacat atcactaagt
     3001 ttctatatgt atcagaaatg agaaaaatat tatagtgttt aaggctaaca tcctttttta
     3061 gcttttattg aaagttgttc aaatataata tatatttttt gagaggcagt gttagtgatc
     3121 taggaactcc tagactgata gactagaaaa gaatgtggct agattaacat tgccaagcat
     3181 agagtttatg ttttattatg ttgatgtttt gttatataat tataaacatg cacaggtttc
     3241 tgcatgaaaa gatattaata tattaatcac atgtgcgtgc cttttggtta catgcactaa
     3301 atctaacaaa gttaaattat tttggtggct cttttggcct cctactaggt gaggtggtct
     3361 tgtttttagt tctaaaaagt ttctttgcac aaaatttcgt ttttaagaaa tgtatctttt
     3421 gactgaatta ttgttttgaa aatgttatat aggttttcaa taggtcaata accatatgta
     3481 aatggttttt tataaatttc tcaatttggg gacaatattt ttttgtgatc taaattgtgg
     3541 acttattctt tactttgtaa gtgtatatat atatatgtat atatatatat aaatataatt
     3601 ttttctttgc aacactggag cacaatgttt ctatgtaaag aattcttttc tttatccatg
     3661 agcaccaggc tttgctcact taaaaataag ccacattaag gagtgagtct tcttttttta
     3721 caataatgta aaaatgaact gtttacattt ttttaaagca ttgtagtttt taaaaattaa
     3781 gctgttttgt tttgtgttgt tgaatttgaa aggctttgta aatatcaata taatgtacca
     3841 atgaaataac atctgggaca atggaaccct ggtaatgttg ttgatggttt gcatatgttt
     3901 ctgaaactga aatatgtatc attaaagttg gtcatcaaca cttgttaaag gtgagttatt
     3961 ttcagatgac tttagtaaat caagagatgc aagaaaaata aattattgtc ttaaaaagac
//
