LOCUS       NM_001037791            3431 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus WD repeat domain 43 (Wdr43), mRNA.
ACCESSION   NM_001037791 XM_343021
VERSION     NM_001037791.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Bi,X., Xu,Y., Li,T., Li,X., Li,W., Shao,W., Wang,K., Zhan,G.,
            Wu,Z., Liu,W., Lu,J.Y., Wang,L., Zhao,J., Wu,J., Na,J., Li,G.,
            Li,P. and Shen,X.
  TITLE     RNA Targets Ribogenesis Factor WDR43 to Chromatin for Transcription
            and Pluripotency Control
  JOURNAL   Mol Cell 75 (1), 102-116 (2019)
   PUBMED   31128943
REFERENCE   2  (bases 1 to 3431)
  AUTHORS   Sato,M., Araki,N., Kumeta,M., Takeyasu,K., Taguchi,Y., Asai,T.,
            Furukawa,K. and Horigome,T.
  TITLE     Interaction, mobility, and phosphorylation of human orthologues of
            WD repeat-containing components of the yeast SSU processome t-UTP
            sub-complex
  JOURNAL   Biochem Cell Biol 91 (6), 466-475 (2013)
   PUBMED   24219289
REFERENCE   3  (bases 1 to 3431)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 3431)
  AUTHORS   Prieto,J.L. and McStay,B.
  TITLE     Recruitment of factors linking transcription and processing of
            pre-rRNA to NOR chromatin is UBF-dependent and occurs independent
            of transcription in human cells
  JOURNAL   Genes Dev 21 (16), 2041-2054 (2007)
   PUBMED   17699751
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Sep 13, 2008 this sequence version replaced NM_001037791.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.17316.1,
                                           SRR22582416.182267.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-262               JAXUCZ010000006.1  29604693-29604954   c
            263-316             JAXUCZ010000006.1  29596785-29596838   c
            317-400             JAXUCZ010000006.1  29596701-29596784   c
            401-522             JAXUCZ010000006.1  29595650-29595771   c
            523-643             JAXUCZ010000006.1  29592072-29592192   c
            644-780             JAXUCZ010000006.1  29589978-29590114   c
            781-883             JAXUCZ010000006.1  29588280-29588382   c
            884-948             JAXUCZ010000006.1  29585384-29585448   c
            949-1120            JAXUCZ010000006.1  29583764-29583935   c
            1121-1207           JAXUCZ010000006.1  29582109-29582195   c
            1208-1339           JAXUCZ010000006.1  29581023-29581154   c
            1340-1471           JAXUCZ010000006.1  29579652-29579783   c
            1472-1558           JAXUCZ010000006.1  29575875-29575961   c
            1559-1590           JAXUCZ010000006.1  29574641-29574672   c
            1591-1654           JAXUCZ010000006.1  29574021-29574084   c
            1655-1768           JAXUCZ010000006.1  29571880-29571993   c
            1769-1838           JAXUCZ010000006.1  29571304-29571373   c
            1839-1888           JAXUCZ010000006.1  29567237-29567286   c
            1889-3431           JAXUCZ010000006.1  29565610-29567152   c
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..3431
                     /gene="Wdr43"
                     /note="WD repeat domain 43"
                     /db_xref="GeneID:362703"
                     /db_xref="RGD:1565005"
     exon            1..262
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..2062
                     /gene="Wdr43"
                     /codon_start=1
                     /product="WD repeat-containing protein 43"
                     /protein_id="NP_001032880.2"
                     /db_xref="GeneID:362703"
                     /db_xref="RGD:1565005"
                     /translation="MAAGGGGSCDPLAPAGVPCAFSPDSQAYFALASSDGHLRVWETA
                     NNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESHQRKKRKSEAIGTNDQADLLALGTA
                     VGSILLYSTVKGELHSKLISGGHEKRVNCIQWHQDNDCLYSCSDDKYIVEWSTQMCRV
                     KCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLRFTT
                     IRPNESQPFDGVTGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTL
                     SENKEEPVKLAVVCRDGQVHLFEHVLNGHCKKPLTSNCTIQVATPGKGKKATPKPIPI
                     LAAGFCLDKMSLLLVYGSWFQPTIERLALNSKDTHICLERDISNCWAPTVETAITKVK
                     TPVMNSEAKVLVPGVPGHHAPIKLLPAQPKEAENKRKLGGKEATIEERLGAMDLDRRG
                     KKDDLLQTNSFPVLLAQGLESNDFEMLNKVLQTRNVNLIKKTVLRMPLHAVIPLLQEL
                     TKRLQGHPNSAVLMVQWLKCVLTIHASYLSTLPDLVHQLGTLYQLMESRVKTFQKLSH
                     LHGKLILLVTQVTASEKTKKMPSPGLKAKLVYEEESSEEESDDEIPEKDSDDNWDEDE
                     EKDSENDEAVDEDSENDEAVDEEDEDREAASEKELNGDSDLDPENESEEE"
     exon            263..400
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            401..522
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            523..643
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            644..780
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            781..883
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            884..948
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1120
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1207
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1339
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1471
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1472..1558
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1559..1590
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1654
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..1768
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1838
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..1888
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
     exon            1889..3431
                     /gene="Wdr43"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggcgaaca cgtggctgcc gcggagctag agcagcaatg gcggccggtg gcggcggtag
       61 ctgcgacccc ttggccccgg cgggggtccc ctgcgccttc tcgccggaca gtcaagccta
      121 cttcgcttta gcctctagcg acggtcactt gcgggtgtgg gagacagcta acaaccggct
      181 gcaccaggag tacgtgcctt ccgcgcacct aagcggtacc tgcacctgcc tggcctgggc
      241 gccagcccgg ctgcaggcca aggaaagtca tcaaaggaaa aaaaggaaat cagaagctat
      301 aggaacgaat gaccaggctg acttgttggc tcttggtaca gcagttggta gcattttatt
      361 gtatagcaca gtaaaaggag agttgcacag taaattaata agtggtgggc atgaaaaaag
      421 agtcaattgc atacagtggc atcaagacaa tgactgcctg tatagttgtt cagatgataa
      481 gtacattgtg gagtggagta cacagatgtg cagagtgaag tgcaaatgga aaggagacaa
      541 tagcagcgtc agttccctgt gtatcagccc agatggaaag atgttacttt cagctggtcg
      601 aacaatcaaa ctatgggttt tggagaccaa agaagtctac agacacttca caggacacgc
      661 aacacctgtt tcatcgctta ggttcacgac catcagacct aacgagagcc agccttttga
      721 tggggttaca ggcctttact ttctgtctgg agctgtacat gaccgattac ttaatgtctg
      781 gcaggtccgg tcagagaaca aagagaagag tgcagtgatg tcttttacag tcacagatga
      841 gccagtctat attgacttga ccttgtcaga aaacaaagaa gagcctgtca agttagctgt
      901 tgtttgcaga gatggtcaag ttcatctgtt tgaacacgta ttaaatggac actgcaaaaa
      961 gcccttgact tcaaattgca caattcaggt ggcaacacct ggaaagggca agaaggcaac
     1021 accaaagccc atccctattc tagctgctgg cttttgctta gacaaaatgt ccttactgct
     1081 tgtgtatggc agttggtttc aacctaccat cgagcgactg gctttgaact ccaaagatac
     1141 tcatatatgt ttggaaagag acatttcaaa ttgctgggct ccaacagtag aaactgctat
     1201 aaccaaggtg aaaacaccgg taatgaattc cgaagcaaaa gtcttggtgc ctggggttcc
     1261 tggacatcat gctccaatca agctgctgcc tgcccagccc aaagaggcgg agaacaagag
     1321 gaaactgggc ggtaaagagg ctaccatcga ggagcgcctt ggtgccatgg atctagatag
     1381 aagaggaaag aaggatgacc ttttgcagac aaacagcttt ccagtccttc tcgcgcaggg
     1441 cttagaaagc aatgactttg aaatgttaaa taaagtgctt caaactagga atgtaaacct
     1501 gataaagaag actgtgctga ggatgccctt gcatgctgtc atcccactgc tgcaggagct
     1561 tacgaagagg ctgcagggac atcccaatag tgctgtttta atggtccagt ggctgaagtg
     1621 tgtgctgacg attcatgcgt catacctgtc cacgctgcct gacctggtgc accagttggg
     1681 aacactctac cagctaatgg aaagcagagt caaaactttc cagaagctct cacacctgca
     1741 tgggaagctc attcttctcg tcacgcaagt tacagcatca gaaaagacga aaaaaatgcc
     1801 ctcccctgga cttaaggcaa aattggtgta tgaagaagag tcttctgaag aggagtctga
     1861 cgatgaaatt ccagagaagg attctgatga taattgggat gaggatgaag agaaagacag
     1921 tgagaatgat gaggctgtcg acgaagacag tgagaatgat gaggctgtcg acgaggaaga
     1981 tgaggacaga gaagcggcga gtgagaaaga gttgaatgga gattcggatt tagatcctga
     2041 aaatgagagt gaagaagagt gaagacagac acagccagtt acacaagaat cctggctcgc
     2101 cttgcccagt gctgtctatc gcgtcctccc agggaggctt gcccagtgcc agcagacaag
     2161 aggccaccat atgcttccaa ttcactgagg cgattcccac acctccttcc tgtcctgagt
     2221 gcccagactg taactgtgta aataagagtg tttcattcaa atgttaataa actttacaca
     2281 gtaaatagac acactttctg caatgtactg acacgagtgt ccaatatatg gtatattttt
     2341 ataatataat actctagtgt gcttggttct atcggaaact gacttggggg gtacagacat
     2401 gccatagggg gcaggaatgg acgcttgtga aggagtcagg tctcgtctca ggttagtatc
     2461 tttcattcgg tccaaatgcc aagcagcatt aacgaattgt ttttaatccg gcacgtctcg
     2521 tttgatacat tttcataaaa gatgaaggga taactaaaag ttcaagtgaa aatggtgatt
     2581 tacagaaata aagtcacggt ctccctagct tagcactcac tgtgatctga tccagatctg
     2641 tttgggtggt tggagggctt ccccaaataa ccacttattt tttaaagtgt catgtcagat
     2701 attttttaaa acaaaacaaa ataatggtaa ttaaagaagc aaagcttcag ccatgctaag
     2761 gctcttgtct gcagactgta aaggctcatc agtacacaga tgagacctgc tcatcatgcc
     2821 atttgtaacc ctctgtccta gctgcttttg aaggtttcca tttttattta aatgactaat
     2881 ggatcagaga acaattgttt attttttttt ctctttggtt ttagataata accttgctgg
     2941 aatttttttc caaagagact atttttataa ttcagtaatt taacattttg gttccttttc
     3001 attacccgct cttagcaggg ctagggtatc tgtttatctt tcaaaatgat aaatcttact
     3061 caagattttt tatgtatgta taaataagta ttttggtgtg ctacacagct ttttcaaatt
     3121 accagtaatt tgtcttgttt ctaaagagtg ggccagtact aactcgttca gtcaggggtg
     3181 cagatggaga gctgtcgtct gcagaaggac tgagcagatg cgaggctttc ccacctgtga
     3241 ctaagaaaag tgctccctgg gaggacttcc atcagggaca gagcaggctg cacagccgaa
     3301 gcgggaaggg catcctgggc aagctgctgg tgcgattgat gtacagttgt tctttgtcta
     3361 taaatggagc tgtttatggc aatttaatac cattctcttt gtaaagtgaa taaatgctca
     3421 tctttaccca g
//
