LOCUS       NM_001399335            1186 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus WD repeat domain 38 (Wdr38), mRNA.
ACCESSION   NM_001399335 XM_575125
VERSION     NM_001399335.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1186)
  AUTHORS   Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
            Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 6, 2022 this sequence version replaced XM_575125.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213095.1, SRR26360186.204888.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               JAXUCZ010000003.1  43159856-43160011
            157-277             JAXUCZ010000003.1  43160381-43160501
            278-394             JAXUCZ010000003.1  43161234-43161350
            395-492             JAXUCZ010000003.1  43161439-43161536
            493-573             JAXUCZ010000003.1  43161746-43161826
            574-705             JAXUCZ010000003.1  43161908-43162039
            706-855             JAXUCZ010000003.1  43162139-43162288
            856-903             JAXUCZ010000003.1  43162550-43162597
            904-1186            JAXUCZ010000003.1  43162683-43162965
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q12"
     gene            1..1186
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /note="WD repeat domain 38"
                     /db_xref="GeneID:366035"
                     /db_xref="RGD:1562587"
     exon            1..156
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..987
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /codon_start=1
                     /product="WD repeat-containing protein 38"
                     /protein_id="NP_001386264.1"
                     /db_xref="GeneID:366035"
                     /db_xref="RGD:1562587"
                     /translation="MNIRAPTKLAVGRVRFYGQHHGEVNCSAFSPDGRNLITASDDGC
                     VYVWGTKSGRLLWRLAGHKGPVKSCRFSPDGRLVASSSCDHTIRLWDVAKAKCLHVLK
                     GHQRSVETVSFSPDSKQLASGGWDKRVILWEVQSGRNVRFLPGHCDSIQSSDFSPTSD
                     SLATGSWDSTVHIWDLRASSPAVSFRNLEGHTGNISCLKYSASGLLASGSWDKTVRIW
                     KPTTNNLLLQLRGHATWVNSLAFSPDELKLASAGYSRMVKVWDCLTGKCLETLKGMLD
                     VAHACIFTPNGKLLVSGIADATR"
     exon            157..277
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            278..394
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            395..492
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            493..573
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            574..705
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            706..855
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            856..903
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
     exon            904..1186
                     /gene="Wdr38"
                     /gene_synonym="RGD1562587"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtttccctt ccccttctac cgaggcccct ccaacgggac tggtgcccgc ttaggaggga
       61 gccctcccgg ttctggagcg ggctcccatg aacatcagag ctccaacaaa attggccgtg
      121 ggcagagtga ggttctacgg tcaacaccac ggggaggtca actgctctgc cttctcccct
      181 gatggccgga acctgatcac agcctcagat gatggttgtg tgtatgtatg ggggacgaag
      241 agtgggcgac tgctgtggag actggcaggc cacaaaggcc cagtgaagtc ttgccgtttc
      301 tctcccgatg gccgcctcgt tgccagctcc tcctgtgacc acaccatccg cctgtgggat
      361 gtggcaaaag ccaaatgcct gcatgtgctg aaaggtcacc agaggagtgt ggaaactgtc
      421 agcttcagcc ctgactcaaa gcagctggca tcaggtggct gggacaagag ggtgattctc
      481 tgggaagtgc agtccggccg caatgtgcgc ttcttgcctg ggcattgtga ttccatccag
      541 agcagtgact tctctccaac ctcggattct ctggccactg gctcctggga ctcgactgtg
      601 cacatctggg acttgcgggc atcaagccca gctgtctcct tccgtaattt ggagggccac
      661 actggcaaca tcagctgctt gaagtactca gcatctggcc tcttggcatc tggctcctgg
      721 gacaagacag tccgcatctg gaagcccaca accaacaacc tgcttctgca gctcaggggc
      781 cacgccacct gggtcaatag cctagccttc tctcccgatg agctaaagct ggccagtgct
      841 ggttactctc gtatggtcaa agtctgggac tgcctcacag ggaaatgcct tgagacccta
      901 aagggcatgc tggatgtggc ccatgcctgc attttcactc caaatggcaa actcttagtg
      961 tcagggattg ctgacgcgac aagatgacaa gtctgctgaa agtcaagaac ttcatccatg
     1021 taacttaccc acaggcctaa ggtaactaag ccaccagatc tccaaggcag ggactaccta
     1081 gcctatcccg taaggtggtt gtcacctgct gtaggcaagc gatcacctaa cctcaccccc
     1141 tggaccctgg gcggccagtg tcaaacagga agcagagagc tcgtca
//
