LOCUS       XM_039100016            8591 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WD repeat domain 27 (Wdr27),
            transcript variant X1, mRNA.
ACCESSION   XM_039100016
VERSION     XM_039100016.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100016.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8591
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8591
                     /gene="Wdr27"
                     /note="WD repeat domain 27; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 33 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:308222"
                     /db_xref="RGD:1309633"
     CDS             5914..8370
                     /gene="Wdr27"
                     /codon_start=1
                     /product="WD repeat-containing protein 27 isoform X1"
                     /protein_id="XP_038955944.1"
                     /db_xref="GeneID:308222"
                     /db_xref="RGD:1309633"
                     /translation="MPSTGGHMSDIVTERYVVESKQSAAHAPLACSTQHCAFPLHGNH
                     VCVWSPKDPSHQLLTLQGHHHLITAMVFGNQIDPLLLCSASEDYIIMWNMDECREKAL
                     KGLTPRGTVLGSPLQTVLCLRFSPDDRALAVCAGNKISMMDVEKQSVLVELKGHQGSV
                     TAVEFCPWQAHTLFSVSEDRSFKVWDFCVGSLIYSSSILTAYPLLNLLINEENQQLVT
                     GSADGQLWIFSLMEGHHYHCVAHVDLRKKKETFTTRRMMTEQYGLPEGHQYHCRYEVD
                     KRGEAEATFPVLNLAHCDLCLPDSQGGGLAPECTTCIWIGSSTALFILNLASFELEAA
                     LHLKEFQSLSVQVAGSCAVMNEPISAKAVCILSSMFGSKIAVLEISLSALLSAQQCPR
                     AGRMLSVLASSCVLPTSPLYFGIIKEKFPKLANTKRHAVKSAVEHRPLVFHTKVKSSG
                     YTSAPHMAMFSPKTNIKHNNRRSSKYKNNYKCKEYSESFLPRNLIRQVAVAQAPVAVT
                     CLQFSGDGQQLACGLGNHLSLVFDASLSGAPAAFSGHDGAVNTVCWSHDKRWLLSTAR
                     DRTLRVWSVPRTEFVMLLAADAFPKPVASAQFYYMDTFILLSSGPEFCLLKYHIDLCR
                     DDIRRYKPKSRYKPIFRLPTTSAADITSLSAVNDFYSHIILTAGRDRTVEVFDLNAGC
                     SAAVLAEVHSRPVHRICQNKGSSFIAQQSLAYNLFLTTAVGDGVRLWDLRNLRCVRCF
                     EGHPNRSYPCGVAFSPCGKLMACGAEDRHAYVYEMGSSSFLYRLAGHTDTVTEVAFNP
                     AASQLITATLDGKLQLFVAE"
ORIGIN      
        1 ttgagttgct tttggctaaa aggccaagtc ttgactactc tttgtgcctg atgtgggtac
       61 cttgaggtgc accagagtgg aagctcccat acttttgcac actttccact tccccttgct
      121 ctcacatggc cttgccaaat ttatctgtgg gccaccaccc ctgtcgtcag ccaaggttcc
      181 tgtgctcagt ccatgtgtgg tcaggcatgt ttttttgtta gtatgacacg aatcttcacc
      241 ttctctgggt cctaaggtac tttctttgcc accccctacc ccttgatcag gtcactggac
      301 attgtttcac agtgtcactg aatctctttt caaggaaccg gttatgtgtt agctatggaa
      361 agaaatctta gaatgtcagt agcttaacac agcaaatctt tccacagagc agacaggcca
      421 tgatgctctt ctgatcagga caggtgtcct gctctggatc ttcagccttc ctcctccctt
      481 agggaggaaa tggagcacca tcatagatat tccagtgcac ctgtgagata attgttctgg
      541 agctatactt gctagatcct tgtagcacag gctgtccctg acttccagag agctgggaaa
      601 tgtaaatgtt gctacattcc tctggttcta gggagaaaac tgaaagtacg gatgaaaact
      661 gctaggtgac tgcccatcta ctgattagaa aacagatgtc ttcaagacaa aaataacttt
      721 gacatggcca tcagttttag gaggccgtct gatctttgat caaagggagg acaggctgtc
      781 agctagctaa tccagagctc tggaactgcc cttgtgtgtg tctctgattc ctcctgtgga
      841 atgacctagt tttccagata ccctgtgtct ctgactgttg cacattactg tctgcaggag
      901 agtaggtgct acagctgaga atgccaagcg ttggctgcaa ggggaagctg gtgcatcaat
      961 aactttcctt cccttgatgt tcaaggcagt ctacaggaac tggttaacac tctaagtgca
     1021 ttcctttatc tcttgtaaat atgtcagcct actaagggat gctcacactc actcttgtat
     1081 gtcagatgct gagtccagga tgctgcttgt ttgctttctg cttttactat aagattttgg
     1141 tcagtatgag acttttacaa gatctagcca gtcaaaattc cagcatgaga cttcaccctt
     1201 atctgaaaaa gtactggcaa ctgacacctt ctaggggaga gtagaaagtc atttatcttt
     1261 ggatgtgtgg ccactggtag gttgttcatg ccccactgaa tgtccctgac cgtgcataca
     1321 ctagttgtac tagttgggcc tagtgggtta ttaaaacaaa atagaagagg acagaaaggg
     1381 gggggatttg tggcagagtc cagaaggagt tgaagttcaa aatacattaa gtatatggaa
     1441 ttctcaagga atagatttag aatgctatag tctccatggc attatctctc tctctcattc
     1501 tttatggtca actgaccaca tctggacttt actaaaaccc aagtggctgg gcacacctat
     1561 gaggagtttt tctacgtcat cagaagtggg aaggcccaca ggtaagctgt gccacacccg
     1621 tggtggcagt ctgcataagg gacgtggaag aaggaagttc tccgctctcc tcctgcttgc
     1681 cctccctctg cctagcgact tgaatccttc atgggcacaa gtacctactt tttcaggatt
     1741 ccagcatata ttgaagacat ctgaaccatc cagcctcact gactgaacac tactggattt
     1801 ttggactttc tatttgttgg cagccattgt tgatttggtt agactacagg ctgtaagcca
     1861 ctttaataaa tgccctcttt atgtagattc tgttgctcta gagaatcctg actagtacag
     1921 tctccttgag ttgtcatcat attccttctc caagatcctc tttgcatcaa attatatgtg
     1981 tttgggtgtg tgtgtaagtg tggttaatta tgagcatatg tgacggtgca tacatgtgtg
     2041 tctgcatatg tgttttgtct cttcctgtag aattgcacac actgtcttcc tccacatgag
     2101 atgtggtatc ctggccagtg tcactgccat gccttctttc tttcttccat gtatttagac
     2161 taactcattc tgctagctcc tggatggtaa gagcaacatg aggtgctcca attgctacac
     2221 tcaaaattta cacacagttt catcccatgt aactgcaaga aagttggatt cagagcctag
     2281 agaatggcac agtggaaggt ttgcatctca tgatcacatt tactagttta tttatgatac
     2341 tccatattgt tctgtctcag aaatagtagc cctagttgct caggccaaca acctaggaag
     2401 catgtttgac tcctctagcc cctatcatcc actggagagc acggctcatc agtgttggtg
     2461 ggcttccttg tcatctcacc tgctaaagtc ctaagcttgg acatgccagg agctttctct
     2521 accagacccg cagtcaaacc tatgctgaga taaaacccca ggagtctatt tgatgttaga
     2581 aactatagga tctgtggaca catctttcag tatctcaaac caaaatatct gtttccatag
     2641 ccagtgaggc cttgcagatt tctgcctcac tgtactgatc tatctatccc tccagtcagc
     2701 tgagagttgt cctgttgaat taaatatctg cccatggaag acgccagcac cagaccaagg
     2761 acagcaccag ccacatagaa atgtccaagc cacagtggct ggagtgtggg gaaaatgggg
     2821 aatttatatt ctaattagat cacactgata tttcacaaag caacagaagg actcttctga
     2881 tgtttgatct ggaggagaga ggcaggtgtc ctgaagatga gagacattca ggattcctag
     2941 tacatggtgg ctatgcaggt tcctcacagc tatgcacaaa gtgcctgcca tgtgtccagt
     3001 ctgtcctgtg ttgatccata agtgcctgct gtgtgccgag tctggcctgt gctcatcttg
     3061 tgttacagtt tgataggcat ttgttcttta gcagaccagt ggtagtttag ctatgaaaca
     3121 ggtctttgaa actctgaaac tactagtaaa acataagctt cacattaggg cataaggatg
     3181 actttctgaa taattttgat agtgtagtca gcaaaaatca ttgccagtta cgtgtctgac
     3241 aggattattg tgtggaatat acaaagaacc ccccaaaaaa ttaacaagaa aacaaactac
     3301 ccagttgaaa atgggctcta aaggtaagca tagtccatga aggaacctaa ccatttatat
     3361 gtgtctaata aacacagaaa aaccaaacca aaagcccaaa gtgttgacat ccctagctat
     3421 ctgagaaatg caggttaaaa ctactttgag attccacctc ttcccaggca tagtggtctt
     3481 catcaagaac tcaaatgaca gcaatgctag tgtggatgtg ggaattggga atgcttaatc
     3541 actgttggtg gggtgcaaat ttgggtagat gctatgaaaa ttagttcagt agtttctcaa
     3601 aaaattaaaa caagacacat atggcccaac tatactactc ctggtatata tctatctcaa
     3661 tcgtatctgt ctgtctgtct gtctgtctat ctatctatct atctatctat ctatctatct
     3721 atctatctat ctatctatca tgtatgtatg ttatctgtat catctatcca tttatcatgt
     3781 catgtatctg tctacctacc tacctatcag attatctatc tattattatc tatcctacct
     3841 acctatcaca ttctatatcc tcctgcagag atactggaac gtctatgtcc attgctgttc
     3901 tattcacaat agctagtaaa tggaatcagc ttagatgccc cttaaccaaa gaatggctag
     3961 taaaacagtg tatgcacaat agaattttat tcaactgtaa agaaaaatga gatcgtgaat
     4021 tttgcaaggt aaagaatgga actggaaaat acattatagt aaccaaggcc cagaatgtca
     4081 aacactgcat gccctctgat atgattatag ctttgatttc tttgtttgtt gaacttggga
     4141 tgtctgtaga gacatgggaa ttagtaatgg gccataggga tgggagaaga ggcatcgaag
     4201 aaggtgggga tagtagcaca tgtgtgatgt gaaaatggct ggaatactgg ggatggcagg
     4261 aatgtgaggt ggctggtcac attgcatcca tagtcaggaa actgacagat tactaatgct
     4321 cagctctctt ccaccttaaa tgttttgtgt gtattaatca gacatagtga cgattttatt
     4381 atggcatttc cacacatgta tgttttgatc atagtctcct ctcaccttga ccaatcccat
     4441 tgctcttccc aaataatcct cctatttttc atatcatttg tttcttcttt tgtgtcccaa
     4501 tgaatgctta caggaacatg agtaaagggc tatttacaga aacgtggaca cctaaccagt
     4561 gatgtagcca ctgaagaaaa tgtctctttt ttttccccct agcaacaatt aactacctag
     4621 aaatcctgag ggagatgtgg ggactcatga cccactttgc tgtccctccc ccatgtcaga
     4681 atattgacag ggtcacttta atgtaggtaa tcccagatgc tgcggattca agaggggatt
     4741 ggccatgtcc ttcccagaag ttccacaact ttccacttct ttctctggct cttactaact
     4801 tcccttttct tctttggtaa tgtcctctga gcctttgagg aggtaatatg gatattccat
     4861 tactgggcgg tcactcaaca ctcacttagt tttagttact gctgcacact ataaaatgaa
     4921 ggttctctga ccaaagctga gctcagcact aatccaatag catgaataaa tacctagaag
     4981 gcagtttgac aacattgctc attcataaaa gcagcaccat cagtttctgt ggtcttggcc
     5041 gccgtgtgct ccactattgt aagcgtgagt ataatttaga ggagaggggc atgttttcac
     5101 ccagcaaggc cacttgacgg agcatctagg gtccagtttt agatcaacta gtctgtattt
     5161 tcttcaaatc ccgctgttct tagttttctg aaagaaggtc tctgcttttc cttctgatga
     5221 taaaacttta gagggtggac cggggcctga tcagctgttt gtagagaggt ataggcatcc
     5281 tgatcaccag aaaacacagg actaaagatt ggttgctgtg ccttcaagta catctgttcc
     5341 cacagcagga taggatgagt ggagtcaagg aatcctctaa cttactacca cagggctcta
     5401 aggtggtcat gctcagtaaa ttgtttaata aagtgagaaa acatggagaa cagttttgac
     5461 attttatgct tgttgagact taggaatgaa tcactgatgt tgtaacttcc atcacagagt
     5521 atcgagataa ttgcatgtgt ccagatccac tgagatactc gaataccccc tgaggttcct
     5581 catttctgtt gcagtatctc accaactcca cctaggcagg ggtcttcctt caggtcagga
     5641 aggtgggagg tggcagttca ccttcagagt cccggaagag accttgaggg tggaggaagg
     5701 cctgtggagt gcggaccatg ggagagcaga agagttcatt ctgtgctcac tgctaccttg
     5761 tcttttgggg gagctggagt gagtgggtaa gcgtgatgtg tagccatgct cacagtgatg
     5821 aatcaactgg actttgatgt gtatgacaca gggtacctgc cctcatctta cttatgcatt
     5881 gtgttttcag gctgacagga aacacctcca gagatgccgt ccactggcgg ccacatgagt
     5941 gacatagtta cagaaagata cgtggtcgag tctaagcagt ctgcagctca cgctccactt
     6001 gcttgtagca cacagcactg tgcttttcct ttacacggga accatgtctg tgtgtggagc
     6061 cccaaggacc cttctcacca gcttcttacc ctccaaggac accatcattt gattactgct
     6121 atggtttttg gaaatcaaat agatccactt ctactctgct ctgcatcaga ggattatatt
     6181 ataatgtgga acatggacga atgcagagag aaggcactta aagggttgac tcctcgaggg
     6241 actgtcttgg gctccccttt acaaacagtg ttgtgtttgc gatttagtcc agatgatcgt
     6301 gctcttgcag tgtgtgctgg aaacaaaata tctatgatgg atgtggagaa gcagtctgtg
     6361 ctggtagagc tgaagggcca tcaaggctca gtgacagcag tggagttctg tccctggcaa
     6421 gcacacaccc tgttctctgt gtctgaagac agaagtttta aggtctggga cttttgtgtg
     6481 ggatccttga tatacagttc atccatttta acagcttacc ctctcctgaa cttgcttatt
     6541 aatgaagaaa accaacagct cgtcaccggc agtgctgatg gtcagctgtg gatctttagc
     6601 ttgatggagg gacatcacta ccactgtgtg gcacatgtgg acctaaggaa gaaaaaggag
     6661 actttcacca cccgaagaat gatgactgag cagtacggcc tgccagaagg ccatcagtac
     6721 cactgcagat acgaggtgga taaaagggga gaggctgaag caacgttccc tgtcctgaac
     6781 ctggcgcact gtgacctctg cctgccggat tcccagggtg gaggtcttgc tcctgagtgc
     6841 accacatgca tatggattgg aagctcaaca gctctattca tattgaacct ggcaagcttt
     6901 gagttggaag ctgctttaca tctcaaggaa tttcagagcc tgagtgtcca agttgctggg
     6961 tcgtgtgcag tgatgaacga gcccatcagt gccaaggcag tttgcatact ttcatctatg
     7021 tttgggagta agattgctgt attggaaatc agcctgtctg ctctgctgag cgctcagcag
     7081 tgccctcgtg caggaaggat gctctccgtg ctggcaagct cctgtgtcct gccaacttct
     7141 ccactgtatt ttggaattat taaggaaaaa tttcctaagc ttgccaatac caaacgacat
     7201 gctgtgaaga gcgctgtgga gcacaggccc ctggttttcc acactaaagt taagtcgtct
     7261 ggctacacat cggcaccaca catggctatg ttttctccaa agactaacat caagcataat
     7321 aacagaagat cttcaaaata caagaacaat tacaaatgta aagagtactc ggagagtttc
     7381 ctacccagaa atctgatcag acaggtggct gtagcccagg cgcctgttgc tgtgacctgt
     7441 ctgcagttct caggggatgg acagcagctg gcctgtggct taggtaacca cctgtccctg
     7501 gtcttcgatg ccagcctttc tggagcaccg gctgcctttt caggtcacga tggagctgtg
     7561 aacactgtct gctggagcca tgacaagagg tggctgctgt ctacagcccg agaccggaca
     7621 ctgagggtgt ggtcagttcc caggacagaa ttcgtgatgc ttttggctgc agatgctttt
     7681 cccaagccag tagcatctgc acaattctac tacatggata ctttcatact gctgtcttct
     7741 ggccctgaat tttgtctgct gaagtaccac attgaccttt gtagggatga catacgaagg
     7801 tataaaccaa aaagcaggta taagcctatt ttcaggctcc caacgaccag tgcagcagac
     7861 ataaccagcc tgtcagcggt gaacgacttt tattcccaca tcatactcac agctggccgg
     7921 gaccggactg tggaagtttt tgacctcaat gctggctgca gtgctgcagt gctagctgaa
     7981 gttcattcac ggcccgtcca tcgcatctgt caaaataaag gatcatcctt tatagcccag
     8041 cagtccctgg catataatct tttcctgact acagctgttg gtgatggggt tcgcctgtgg
     8101 gacttgagga acctgaggtg tgttcgctgc tttgaagggc atccaaaccg ctcttaccct
     8161 tgtggagttg cttttagtcc ttgtggaaag ctcatggctt gtggtgcaga ggacagacat
     8221 gcttacgtgt atgaaatggg ctcgagcagc tttttgtacc gtcttgcggg acacacagat
     8281 acagttactg aagtggcctt caacccggca gcttctcagc ttatcacagc caccttagat
     8341 gggaaacttc agctatttgt ggctgagtga cagctgacct gctggtaaga atacaagaag
     8401 aaaggagaga aagaatccat ggcttagcta tttgaagtgg acgggcagtt tccataggag
     8461 acccttgctg gattcctctt ctgtaggact gacccccatg tgagagtccc tcctcttaag
     8521 aaaaccttca tgggaatcct ggaaatgatg ttcttcaata aagatgagcc agtgcctctt
     8581 tcatgactgg a
//
