LOCUS       NM_001100894            4155 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus WD repeat domain 20 (Wdr20), mRNA.
ACCESSION   NM_001100894 XM_001071278 XM_234540
VERSION     NM_001100894.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4155)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On or before Dec 16, 2009 this sequence version replaced
            XM_001071278.1, XM_234540.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.19319.1,
                                           SRR26360172.1412506.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-379               JAXUCZ010000006.1  135573246-135573624
            380-562             JAXUCZ010000006.1  135615116-135615298
            563-1822            JAXUCZ010000006.1  135629252-135630511
            1823-4155           JAXUCZ010000006.1  135640356-135642688
FEATURES             Location/Qualifiers
     source          1..4155
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..4155
                     /gene="Wdr20"
                     /gene_synonym="Wdr20a"
                     /note="WD repeat domain 20"
                     /db_xref="GeneID:314453"
                     /db_xref="RGD:1306499"
     exon            1..379
                     /gene="Wdr20"
                     /gene_synonym="Wdr20a"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..1876
                     /gene="Wdr20"
                     /gene_synonym="Wdr20a"
                     /note="WD repeat domain 20a"
                     /codon_start=1
                     /product="WD repeat-containing protein 20"
                     /protein_id="NP_001094364.1"
                     /db_xref="GeneID:314453"
                     /db_xref="RGD:1306499"
                     /translation="MATEGGGKEMNEIKTQFTTREGLYKLLPHSEYSRPNRVPFNSQG
                     SNPVRVSFVNLNDQSGNGDRLCFNVGRELYFYIYKGVRKAADLSKPIDKRIYKGTQPT
                     CHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPG
                     SESLFLVAHSSGSMYLYNVEHTCGTTAPHYQLLKQGESFAVHTCKSKSTRNPLLKWTV
                     GEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSVELHGTMKSYFGGLLCVCWSPDGKY
                     IVTGGEDDLVTVWSFLDCRVIARGHGHKSWVSVVAFDPYTTSVEESDPMEFSGSDEDF
                     QDLLHFGRDRANSTQSRLSKRNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQ
                     PLSRARTHTNVMNATSPPAGSNGNSVTTPGDSGPPPLPRSNSLPHSAVSNAGSKSSVM
                     DGAIASGVSKFATLSLHDRKERHHEKDHKRNHSMGHISSKSSDKLNLVTKAKTDPAKT
                     LGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCLVTACQEGFICTWARPGKVGL
                     LSSPNQASSPGGTVV"
     exon            380..562
                     /gene="Wdr20"
                     /gene_synonym="Wdr20a"
                     /inference="alignment:Splign:2.1.0"
     exon            563..1822
                     /gene="Wdr20"
                     /gene_synonym="Wdr20a"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..4155
                     /gene="Wdr20"
                     /gene_synonym="Wdr20a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggggctggc tcgccaatgg gcggggccgc gaagaagggg gtggggagtg gagagcgagc
       61 ggccgaggac ggcgcctgcg cggtgggcgt gatccgggca cttagggcag gatgaacgct
      121 gctttccaag atggcgacgg agggaggagg gaaggagatg aacgagatta agacccaatt
      181 caccacccgg gaaggtctgt acaagctgct gccgcactcg gagtacagcc ggcccaaccg
      241 ggtgcccttc aactcgcagg gatccaaccc tgtccgcgtc tccttcgtaa acctcaacga
      301 ccagtctggc aacggcgacc gcctctgctt caatgtgggc cgggagctct acttctatat
      361 ctacaagggg gtccgcaagg ctgctgactt gagtaaacca atagataaaa ggatatacaa
      421 aggaacacag cccacttgtc atgacttcaa ccacctaaca gccacagcag agagcgtctc
      481 tctcctagtg ggcttttccg caggccaagt ccagcttata gacccaatca agaaagaaac
      541 cagcaagcta tttaatgagg aaagactaat agacaagtca cgcgtaacct gtgtcaaatg
      601 ggttcctggt tcggaaagcc ttttcctagt agcccattca agtgggagca tgtacttata
      661 taatgtggag cacacttgtg gcaccacagc cccccactac cagctcctga agcagggaga
      721 gagctttgcg gtgcacactt gcaagagcaa atccacgagg aaccctctcc ttaagtggac
      781 agtgggcgag ggggccctca acgagtttgc tttctcccca gatggcaagt tcttagcgtg
      841 tgtgagccag gacgggtttc tgcgtgtgtt caactttgac tcagtggagc tgcacggtac
      901 aatgaaaagc tactttgggg gcttgctttg tgtgtgctgg agcccagatg gcaagtacat
      961 tgtgacaggt ggagaggacg acttggtgac agtttggtcc tttctagact gccgagtaat
     1021 agctagaggc catgggcaca agtcctgggt cagtgttgta gcatttgatc cctatactac
     1081 tagtgtagaa gaaagtgatc ctatggagtt tagtggcagt gacgaggact tccaggacct
     1141 tcttcacttt ggcagagatc gagcgaacag tacacaatct aggctatcca aacggaactc
     1201 tacagacagc cgccctgtaa gtgttacgta tcggtttggt tcagtgggcc aggatacaca
     1261 gctgtgctta tgggacctta cagaagacat ccttttccct caccagcccc tctcaagagc
     1321 aaggacacac acaaacgtta tgaatgccac aagtccgcct gccggaagca atgggaacag
     1381 tgtcactaca cctggggact ctgggccccc tccattaccg cggtccaata gccttccaca
     1441 ctcagcagtc tccaatgctg gtagcaaaag cagcgtcatg gacggggcca ttgcatctgg
     1501 ggtcagcaag tttgcaactt tgtcgctaca tgaccggaag gagagacacc acgagaaaga
     1561 ccataaacga aatcatagta tgggacacat ttccagcaag agcagtgaca aactgaacct
     1621 agttactaaa gccaaaacgg acccagctaa aactctgggg acatccctgt gtcctcggat
     1681 ggaagatgtt cccttgttag agccactgat ctgtaaaaag atagctcatg agagactgac
     1741 ggtattggtt tttcttgaag actgtctagt cactgcttgt caggagggat ttatttgcac
     1801 atgggcaagg cctggtaaag tgggcttgtt gtcatcccca aaccaggcca gttctccagg
     1861 tgggactgta gtgtagcagt tacactgctg ctgccgggct ccccggacac gcgtggaccg
     1921 agggagtgac agacgactac ggagccatga gctgcgctgg agccacaggc aggcggcagg
     1981 aagcagcggc cggcagggct gtgtggagct gctaaaccca aagagttgtt ccctttaaag
     2041 ccagtctgtg gggctgcagt aaggactgaa gtggagtttc ctgcttctac tctaaactca
     2101 atgtaactaa acccacatat aatatatata tatatatata tatatacata tatacatagt
     2161 gtaaataagt gtttctcgaa caggaaacct taaatcgagc tgttctgaat agcacttggc
     2221 tctggttttg cactgatctg atttatactt taggtggtca tcagacgcct ggggtgcact
     2281 tgtggagaca gttgtcacct tctgacttaa cacgtgctgc agaaagacag atgctgcaat
     2341 catagactta aaaatcgttt gcacttaaaa tagtttaatg ctaatagaca atgactttaa
     2401 atatgggggt agcggactcc cggcctccac gatacggagt ggagataaaa acccttttta
     2461 tctgttaaca tttattttag tactgttgtt tctgatgcaa tcaagtctgt attatatgtg
     2521 taaataatgt aattctgaaa tgggggaaat agtcactccc actagtaatt ttcatcattt
     2581 aagagtgata tttctaattc acaaaaacat taatattaaa attatcttga atatactatt
     2641 tgtttatcct tttttaactg tatggttctt tttgtttgct ttggcctcat tccttggttg
     2701 gtgttgaagt acttcattct ttgtggacca catcccttga tcctcctgtc agtcagtctg
     2761 gtcaaagcac gtctttttgg ggaattcttg tctctgggcc aagttgacac accatgggag
     2821 ctgcccaggc atggggactc tagtgtaggc acacggcttt ttctttatgc cttggagtcc
     2881 acctgctatc cttgaaagct gagacctcag actgtaagtt tccactgctt cagcgcagcc
     2941 ctgggctagc tgggacaacc acgtgggcct tccagaggct ggcatcagcg ggcgagcgtc
     3001 ttcctgctca cctgtcactg ctgcagtgta atggagacga agcccagatt cccaggcaga
     3061 aggacctttc tcagcttcta aactaagaac tgggaagttc tttttttttt tcttttcgga
     3121 gctggggacc gaacccaggg ccttgcggtt gctaggcaag cgctctacca ctgagctaaa
     3181 tgcccaaccc cccctttctc agcttctaaa cagtcacaca cagcgggggt gagagtaaga
     3241 caaggcttct gaaccatttc tccagtgagt ccattaaact gaggcgtgtg gagggctcgt
     3301 taggttggct gaagttttag cagctgtgac tgccaaggct gcggctgcac agttcgccaa
     3361 ggcaaagccc aggtttgtct tcattcactg tagctccctg gctcccacgc tggggaatcc
     3421 actatctctg ctgatgccta caaggcctct agccttgcct cagccttggg aaggtgcaac
     3481 ctaggacact aagacatttt ctttcctgtt tcgttctgtt gtactctggt ttgacaggcc
     3541 ttggctggcc tggaactcag tgtagcttag atagattact tcaaaatgga agcagtcgtg
     3601 ctctcagcct tccaagtctc agagcatgga ttacaggcat gtggttagag gacagtcgag
     3661 ggagtcgtct ctttccttct accatgtggg ttctggtggt caagttcggt tgtgagggtt
     3721 ggtggcactg agcctgctca ctgtaagtaa aacgatttct aagtcatatg ctcaggtcat
     3781 gttagaggga agtgttgaca ttttacagtt tggtgttcct gtcaccttgg agcactgatc
     3841 acacagaaaa actcagccct ttgagtccaa aatgcccaca agaaagtgac tagggactgc
     3901 cctggaagcc caagtctgca gcacagagcc ttgacctccc agagcagctc tgtcctagac
     3961 gctcccatct gtaggaagtg agaggtggac tcgagggcag caggtacttg tgtgaggctt
     4021 gagcaccatt tgaggagatg ctccagttgt gtccctcagc tctcgctgac caccactcag
     4081 gggccttggt cctttccctg cctcacccag tctgtgtcgc cctatgtttt catttgaccc
     4141 acggtgtctc agttt
//
