LOCUS       NM_001399126            2819 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus WD repeat and coiled coil containing (Wdcp),
            mRNA.
ACCESSION   NM_001399126 XM_006239866
VERSION     NM_001399126.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Yokoyama,N. and Miller,W.T.
  TITLE     Molecular characterization of WDCP, a novel fusion partner for the
            anaplastic lymphoma tyrosine kinase ALK
  JOURNAL   Biomed Rep 3 (1), 9-13 (2015)
   PUBMED   25469238
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 4, 2022 this sequence version replaced XM_006239866.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1048028.1,
                                           SRR21887623.2738077.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000006.1  33570145-33570269
            126-1965            JAXUCZ010000006.1  33576579-33578418
            1966-2080           JAXUCZ010000006.1  33581812-33581926
            2081-2819           JAXUCZ010000006.1  33584247-33584985
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..2819
                     /gene="Wdcp"
                     /gene_synonym="RGD1563701"
                     /note="WD repeat and coiled coil containing"
                     /db_xref="GeneID:500623"
                     /db_xref="RGD:1563701"
     exon            1..125
                     /gene="Wdcp"
                     /gene_synonym="RGD1563701"
                     /inference="alignment:Splign:2.1.0"
     exon            126..1965
                     /gene="Wdcp"
                     /gene_synonym="RGD1563701"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..2301
                     /gene="Wdcp"
                     /gene_synonym="RGD1563701"
                     /codon_start=1
                     /product="WD repeat and coiled-coil-containing protein"
                     /protein_id="NP_001386055.1"
                     /db_xref="GeneID:500623"
                     /db_xref="RGD:1563701"
                     /translation="MELGNGKLPRTGLNSLNQAVHPTQGLAWTDGNRVVLTDLQLHSG
                     EAKFGDSQVIGSFESVCGVSWAPVSTVHVPSLLAVQHRKLVSVWQLCPSTIGSSKWQM
                     CQTSEIRESLPILPQGCMWHPKDPVLTVLTARDVSIFPNVHQDGGPRVKVDINTRGRV
                     YCACWTLDGQRLVVAVDSSLHSYIWDSSQKSLHSCSFCPVFPVHCCIRTITATGNSQV
                     AVATELPLHKLCSLNASDAFGGPPNGEDGAVHPHPVGVSETPPVDEQEAAAEMNSGAA
                     VSPLSVPLDLTHIHFNRSGAEQRSLICLRKKDYLTGTGQDSSHLILVTFKKAVTMTKK
                     VAIPGILVPDIIAFTLTAQLVAVASNTCNVILIYSVAPSSMPNIQQIQLESNERPKGV
                     CFLTDRLLLITVGKQKPTETAFLPSSESDQYTVYLTVREITLGRESSGTSAESQGAYA
                     DINALLNKADREEKFTESLSPCVSPLSQGLLLTANSSTQSGRSGKALIQEIKSPLSPL
                     SSDSIVHEVCHRPSWLCTALPRPSRTPDHTSTPEVNSPATENLQKETCPLSRELGSLS
                     RHLVGMQQYLFEIKDFLHKEKRVSPAYPPSHDPPYVHLIYQKPCSVGPAEKRAVLLCD
                     GRLRLSTIQQMFGLHLVEMLHDSHWILLCADGQDFIPLTFTAAQTVMVRDGSLSKPEE
                     ARGSLSHNQDPDPSPEVLGNLATQNVDAAVCSNSVT"
     exon            1966..2080
                     /gene="Wdcp"
                     /gene_synonym="RGD1563701"
                     /inference="alignment:Splign:2.1.0"
     exon            2081..2819
                     /gene="Wdcp"
                     /gene_synonym="RGD1563701"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaggattct cggaggtcca aaggccgagg cttccgttag ttgcccggga cttctgatcc
       61 gctgtcttgt gacgtgagcg gcccccggga ttttatgtgt ggggcgggga ggtagagaga
      121 ccaagatagc ctttatcaga aaggatggag ctgggaaacg gaaaactgcc caggacagga
      181 ctgaactcac tgaatcaagc agtacatcca acccagggcc tggcgtggac cgacgggaat
      241 cgggtagtcc tgactgattt acagcttcat agcggagagg ccaagttcgg ggactcccaa
      301 gtcattggaa gttttgaatc tgtctgcggg gtttcctggg cccctgtcag cacagtgcac
      361 gtgccctctc tgcttgcggt ccagcacaga aagcttgtct cggtttggca gctgtgtccc
      421 agcactatag gatcaagcaa atggcagatg tgtcagacct ctgagatcag agagtcactc
      481 cctatccttc ctcagggctg catgtggcac ccaaaagacc ctgtcctgac cgtgttgact
      541 gcacgggatg tctccatttt ccctaacgtc caccaagatg gcggtcccag ggtaaaagtg
      601 gacatcaaca ccaggggccg cgtttactgt gcttgttgga ccctggatgg ccagaggctg
      661 gtggtggcag tagacagcag cctccattct tacatttggg acagttctca gaagtctctt
      721 catagctgct ccttctgccc agtgtttcct gtgcactgtt gcatccgcac catcacagcc
      781 acggggaact cacaggtcgc tgtggccacc gaacttccac tccataagct ttgtagctta
      841 aatgcatccg acgcctttgg cggccccccg aatggtgaag atggtgctgt acatcctcat
      901 cctgtgggtg tgagtgaaac gccccctgta gatgagcagg aagccgctgc agaaatgaat
      961 tctggagcag cagtttctcc cttgtcagtt cctctggatc tgactcacat acatttcaac
     1021 cgatctggag ccgagcagag gtctcttatt tgtttaagaa aaaaggacta cttgactgga
     1081 actggccaag attcttcaca tttgatcctg gtaaccttta agaaagcagt gaccatgaca
     1141 aaaaaggtcg ctattccagg cattctggtt cctgacataa tagcatttac cctgacagca
     1201 cagctagtgg ctgtggcttc caatacgtgc aacgtaattt tgatctattc tgtcgctcca
     1261 tcttctatgc caaatattca gcaaattcag ttagagagta acgaaagacc aaaaggtgta
     1321 tgtttcttga cagacagatt attattaatt actgtaggga aacagaagcc cacagaaaca
     1381 gcctttctcc cttcttcaga atctgatcag tatactgttt atctgacagt tagagaaata
     1441 actctgggaa gagaatcttc tggaacatct gctgaaagtc agggtgctta tgctgatatc
     1501 aatgctctat taaataaagc agatagagaa gaaaagttca ccgagagcct ttccccatgc
     1561 gtgagtcccc tgagccaagg actcttgcta acagctaact ccagtactca gagtgggagg
     1621 tctggaaaag cccttattca agaaattaaa agtcccttgt cccctctgtc cagtgattcc
     1681 attgtccatg aagtctgtca caggccctcc tggctttgca cagcattgcc tagacccagc
     1741 aggaccccag atcacaccag caccccagaa gtgaattcac ctgcaacgga gaacttacaa
     1801 aaggaaactt gcccactttc cagagagctg gggagtctgt ctaggcacct ggttggaatg
     1861 cagcagtatc tttttgaaat caaggatttt ctacacaagg agaagcgagt ctctcccgcg
     1921 tacccacctt ctcacgaccc tccctatgtt cacctcattt accagaaacc ttgttctgtg
     1981 ggtcctgctg aaaaaagagc tgtgcttctc tgtgacggca gactaaggct cagtaccatt
     2041 caacagatgt ttggcctcca cctcgttgaa atgctgcacg attcccactg gatcctcctc
     2101 tgtgccgacg gccaagactt catcccgttg actttcacag ctgcccagac tgtcatggtg
     2161 agagatggca gcctgtctaa gccagaggaa gctagaggct cgctttctca caatcaggat
     2221 ccggatcctt cacctgaagt cttgggaaac cttgctaccc agaatgtaga tgcggctgtc
     2281 tgctccaaca gcgtgacctg atggctgctt tgcagggcgc atgcgcatgt gctatcgatt
     2341 cccctcgggc tgtgtgctgc tgggccacag ggcaagtggc tgcttatgta ttctgactgt
     2401 gccactttga ggacagaatt ctaagaacga taccacatgg tcatatggat tgtactttat
     2461 ttctccaagg ccttgcttcc ccaacccgaa gctgtgttag cgctgcctac gagtgttcat
     2521 aggatgcaat ggagtagcag taggtcctct gactctgtgc gggtgagaat tctgctgggg
     2581 agcctgcgca cagcctttta atccaattcc tggggcatca gggatccagt gcaaaggaaa
     2641 tcagggacca cacacacttc tgctctcagg accgcctgga tctggaagtt ctgaggctgg
     2701 cctgctctct ccagatctaa aaacaaccaa ccctcttgct cccgtacaca attctggctg
     2761 acagaggtcc ggagactcct aaagtgtgct aaacttttaa ataaacttcc aagatgtga
//
