LOCUS       NM_001127484            3797 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus WW domain binding protein 1-like (Wbp1l),
            transcript variant 1, mRNA.
ACCESSION   NM_001127484 XM_001067855 XM_001067947 XM_001071072 XM_219958
VERSION     NM_001127484.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3797)
  AUTHORS   Zhao,F.Y., Tang,J., Zhang,L., Li,S.P., Feng,Y., Liu,H.T., Qu,Y. and
            Mu,D.Z.
  TITLE     [Role of long non-coding RNA BC088414 in hypoxic-ischemic injury of
            neural cells]
  JOURNAL   Zhongguo Dang Dai Er Ke Za Zhi 17 (12), 1348-1353 (2015)
   PUBMED   26695678
  REMARK    GeneRIF: LncRNA BC088414 may promote apoptosis through Adrb2 and
            CASP6 and aggravate neural cell injury induced by hypoxia-ischemia
REFERENCE   2  (bases 1 to 3797)
  AUTHORS   Zhao,F., Qu,Y., Liu,J., Liu,H., Zhang,L., Feng,Y., Wang,H., Gan,J.,
            Lu,R. and Mu,D.
  TITLE     Microarray Profiling and Co-Expression Network Analysis of LncRNAs
            and mRNAs in Neonatal Rats Following Hypoxic-ischemic Brain Damage
  JOURNAL   Sci Rep 5, 13850 (2015)
   PUBMED   26349411
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before May 22, 2008 this sequence version replaced
            XM_219958.4, XM_001071072.1, XM_001067947.1, XM_001067855.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166754.1, SRR26643292.6743.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               JAXUCZ010000001.1  255413705-255413892
            189-291             JAXUCZ010000001.1  255456615-255456717
            292-453             JAXUCZ010000001.1  255464675-255464836
            454-3797            JAXUCZ010000001.1  255466683-255470026
FEATURES             Location/Qualifiers
     source          1..3797
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q54"
     gene            1..3797
                     /gene="Wbp1l"
                     /gene_synonym="Opal1; RGD1305793"
                     /note="WW domain binding protein 1-like"
                     /db_xref="GeneID:309456"
                     /db_xref="RGD:1305793"
     exon            1..188
                     /gene="Wbp1l"
                     /gene_synonym="Opal1; RGD1305793"
                     /inference="alignment:Splign:2.1.0"
     CDS             99..1196
                     /gene="Wbp1l"
                     /gene_synonym="Opal1; RGD1305793"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; outcome predictor in acute leukemia 1 homolog"
                     /codon_start=1
                     /product="WW domain binding protein 1-like isoform 1
                     precursor"
                     /protein_id="NP_001120956.1"
                     /db_xref="GeneID:309456"
                     /db_xref="RGD:1305793"
                     /translation="MERRRLLGGMALLLLQALPSPLSVRAEPPQDKEACVGTNNQSYI
                     CDTGHCCGQAQCCSHYYELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEINL
                     IAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQLLPPQGGP
                     AGGSPPGADQPQGSQGAQSSPLSGPSRSSTRPPSVADPQSLEVPTERAATKALGMESS
                     SSVASHGELDPGAFLDRDSECKEELLKDSSSEHGGAPPDSKDKTPGRHRRFTGDSGIE
                     VCVCNRGHHDDDLKEFNTLIDDALDGPLDFCDSCHVRPPVDEEEGLCLSSEGQAREHG
                     HPHLPRPPACLLLNTINEQDSPNSQRSSSPS"
     exon            189..291
                     /gene="Wbp1l"
                     /gene_synonym="Opal1; RGD1305793"
                     /inference="alignment:Splign:2.1.0"
     exon            292..453
                     /gene="Wbp1l"
                     /gene_synonym="Opal1; RGD1305793"
                     /inference="alignment:Splign:2.1.0"
     exon            454..3797
                     /gene="Wbp1l"
                     /gene_synonym="Opal1; RGD1305793"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgaaacagg aaaagaaggg aagaaggaag cagagggaag aagagaggga ggaggagggg
       61 tggcggcgcc gtggcggagg agcaggagca ggagggggat ggagaggaga aggctcctgg
      121 gtggcatggc gctcctgctc ctccaggcgc tgcccagccc cctgtcagtg agggctgagc
      181 ccccgcagga taaggaagcc tgtgtgggca ccaacaatca aagctacatc tgtgacacgg
      241 gacactgctg tggacaggct cagtgctgca gccactacta tgaactctgg tggttctggc
      301 tggtgtggac catcatcatc atcctgagct gctgctgtgt ctgccaccac cgcagagcca
      361 agcaccgcct tcaggcccag cagcggcaac atgaaatcaa cctgatcgcc taccgggaag
      421 cccacaatta ctcagcattg ccgttttact tcaggttttt gccaaactat ttactacctc
      481 cttatgagga agtggtgaac cgacctccga ctcctccccc accgtacagt gccttccagc
      541 tacaacagca gcagctgctg cctccccagg gtggccctgc aggcggcagc cccccaggcg
      601 ctgaccagcc ccagggctcc cagggagcac agagcagtcc tttgtctgga ccgagcagaa
      661 gcagcactag acccccaagt gtcgcagatc ctcagtccct cgaagtgccc actgaacggg
      721 cagccaccaa agcccttgga atggagtcca gtagctctgt ggccagccat ggggagctgg
      781 accccggggc cttcctggac agggattcag agtgtaagga ggagctcctg aaagattcaa
      841 gttctgagca tggcggtgca ccccccgaca gcaaggacaa gacaccgggc aggcatcgcc
      901 gcttcacagg tgactcgggc attgaggtgt gtgtgtgcaa ccggggccac cacgatgatg
      961 acctcaaaga gtttaacaca ctcatagatg atgctctgga tgggcccctg gacttctgtg
     1021 acagttgtca tgtacggcct cctgttgacg aagaggaagg gctctgcctg tcctctgagg
     1081 ggcaggctcg agagcatggg cacccccacc tgccacggcc gcctgcgtgc ctgctgctaa
     1141 acaccatcaa cgaacaggac tccccaaact cgcagcgcag cagctccccc agctagaaca
     1201 ggcctgcctg caccccagag cttgacagca accagggttg gggacaccca caagagaagc
     1261 attaagtcat ttgtaggggt ggtccagcca ctttgtcctt ttattttctt cttcccctcc
     1321 tgtcccacct tgcccacatc tccaggtaca aattcagggt gtggacgcct cctctcccca
     1381 caaaagcaca gtgttctaga agatggagaa gctgacttgt tccgcacccc ccctttccag
     1441 agctgtgtct cacctacctg cttggctgag aaacgtgtgt ttggaaaatc cccgaggact
     1501 ggggctggac tgtgccctaa gacggttctc ggtgatggag tggattcata agagaactgt
     1561 ctccgtctgg gagagacagt tatcttggcc ctgggtgaag aaggaaaccc tctggggcct
     1621 ggggattgtg gccaccactg gctacagagc tggcactggt ctaatcctgt gggagggtga
     1681 gcgctagtgg acagggtggt gagggacttg ttgatttgac aagccctagg cggaaagtac
     1741 acatctgtgc attgtggagg ggacccttcc cggcaggctt tggccagctt cagcctggtt
     1801 caggtgtaga agattatatt gttctctgtg ttttccttta aaaacaagta acaaaggcta
     1861 gctggacaca agaacagatt ggtgggtagg caggaactct tgtctgcaca agggaattct
     1921 gctgctcctc cccaggctga gttcccaaga gtctaactat tgctgggcca ggaggagaga
     1981 gtctgaacag gccatcctgg ggcctctctg tgagtggaga cctgaagact ggtagagatc
     2041 atagcctctt tcacttctgc cctttgtcca tgcccacagt tgatcagtgg ccccggtccc
     2101 tcctgaacac agcctgtagt ctctgtctcc ctgtcctctg taagcagatg gactgaggaa
     2161 gttgtgtgtt caggatgaag cagcctccta gcctggctct cacacagtat ttcctgttgc
     2221 gtttgactaa gtctgttgct tgtgtacctg tttgtcttaa actgaccact tagaaggaac
     2281 accttggtta cctgtggttc tcatggctgc cttgccccta gcctgttgga gaagcatgac
     2341 tcactttcct gtacagcctg tgcagagtca cctgggtggg agtcaacatc cgcttccagc
     2401 agacctcggg gcctgcttac tgtcatctgg ccctggagca cagaagccac tgagacgaac
     2461 attccccacc cagccctgct catgcaaaga gttgggtttc tcccctgctc ttgaatgacg
     2521 aggcatagag ttggcactgc cattatggta agaaagaaaa aaaaaaaagg aagaaaaacc
     2581 aagtccatat gtaaacacaa acagatccaa ggcgaatgcg tgtctgcgtt tggatgtcac
     2641 aaaccaaaat ccttgtcgaa caaaagtgaa gtctgcacag tgatgttgga tggcgtgtgt
     2701 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtggta tgtggccccg agccctgtgt
     2761 tcctgtgaag atactttgaa tggccattct gctcacatta accacatgcc tggagcacat
     2821 atggccctct caaggtaatt tattttacac atttactgtt tactgaacaa tcgtctgacc
     2881 gtactcgggt gtattcggca gtcttgtcga cggcattgcc tgtgtttgcc ggggacgctg
     2941 ccctccaggg agaggcttct tactcagccc accactgcag tttgcacatt gctccacgga
     3001 ctcagaggcc tacattctgt tccctgtgcg tggaaacatt gggaaccagt ctccctccct
     3061 ctgctgcttt cagacagaag ttcgattgag tcttgagtga caagcatgga tgggtcgtgg
     3121 cccagacatc gccctgccta ggattaccag gagtctctgg cagagacctt ggcgccacgt
     3181 tcgcacctca tccaccaagg tccagagaga gaagagaggg agctggtggg tggtcagagg
     3241 ggcccgagcc acggccctcc cacacctttc cggctacttt cttggtaaaa tgccagacac
     3301 ctcactgatg tgtgtcggag gagtgagttt tcccaaaacc aacccctctt tagttaactg
     3361 gtggtgaggt gggaccctct cgagtctctt ccccttggca gagtgaggag ctggcccgag
     3421 tgctgaagct ttactgaagc acccaccatg atgacggagc cagtctggcc cctgctgttt
     3481 cagccacctt gatgctcaga gagagcacag gaaatagtga gtcaggggcc agggagactt
     3541 gactgagttg ggtttccagg ttggaggggt taggcagaag gcttggtgct acggtcagat
     3601 ttgcagccgc taacacattc ctgcgtgagg cccaccaccg tctgtcagtc atcgtgacta
     3661 tgtgtatctt aagcaataag attcaggctg ccctgggcag tctgcgcgac gataccctgt
     3721 gctgtgattg tccggaagac agagtggctc caaccactgt gagaaacccc aataaaatcc
     3781 gtctcaagtg ttgtacg
//
