LOCUS       XM_039108349            4408 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus WASP like actin nucleation promoting
            factor (Wasl), transcript variant X1, mRNA.
ACCESSION   XM_039108349
VERSION     XM_039108349.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108349.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4408
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4408
                     /gene="Wasl"
                     /gene_synonym="N-WASP; TRS4"
                     /note="WASP like actin nucleation promoting factor;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 71 ESTs, 5 long SRA reads, 2
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 9 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:682507"
                     /db_xref="RGD:735144"
     CDS             405..1928
                     /gene="Wasl"
                     /gene_synonym="N-WASP; TRS4"
                     /codon_start=1
                     /product="actin nucleation-promoting factor WASL isoform
                     X1"
                     /protein_id="XP_038964277.1"
                     /db_xref="GeneID:682507"
                     /db_xref="RGD:735144"
                     /translation="MSSGQQPPRRVTNVGSLLLTPQENESLFSFLGKKCVTMSSAVVQ
                     LYAADRNCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRG
                     YFHTFAGDTCQVALNFANEEEAKKFRKAVTDLLGRRQRKSEKRRDAPNGPNLPMATVD
                     IKNPEITTNRFYGSQVNNISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNT
                     GFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQGPPQ
                     WSAPPPPPPSRGGPPPPPPPPHSSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPG
                     VVVPPPPPNRMYPPPPPALPSSAPSGPPPPPPLSMAGSTAPPPPPPPPPPPGPPPPPG
                     LPSDGDHQVPASSGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDALLDQIRQGIQLK
                     SVSDGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDDDDEEDFEDDDEWED"
ORIGIN      
        1 gttcggccgt gccgagtttc cggcgcgctc ccccgcgtcc cgcgtcccgt ggtctcgccc
       61 gcccctgctg ccatgttgga ttgtgcggct actgccgccg ccgccgccgc cgctgccgcc
      121 gccagaggac tggaggagta aggagtttag cgcagccgct ggagtgcgag gacaacgacc
      181 atccggcccg agccaagtag ggcgggagtc cggagcttcc ctgtcggcgc gcggcctgaa
      241 ggcgcccgcc gtcagctcct tccctcggcc tccgcgcgcc ggaggagcga cgggatgctg
      301 cgtctgtaac tgccggctcg cgcccctgtc acccggagtg ggaccgagtg ctcgcccacc
      361 accagaagag acggccctgg acactccacc ccaccggcga caccatgagc tcgggccagc
      421 agcccccgcg gagggtcacc aacgtgggct ccctgctgct caccccgcaa gaaaacgagt
      481 ctcttttctc cttcctcggc aagaaatgtg tgactatgtc ttcagcagtg gtgcagttat
      541 atgcagctga tcggaactgt atgtggtcaa agaagtgcag tggtgttgct tgtcttgtta
      601 aggacaatcc tcagagatct tattttttaa gaatatttga cattaaggat gggaaattac
      661 tgtgggaaca agagctatac aataactttg tatataatag tcctagagga tattttcata
      721 cctttgctgg agatacttgt caagtagctc ttaattttgc caatgaagaa gaagcaaaaa
      781 agttccgaaa agcagttaca gacctgttgg gtcgacgaca aaggaaatct gaaaaaagac
      841 gagatgctcc aaatggtccc aatctaccca tggctacagt tgacataaaa aatccagaaa
      901 tcacaacaaa caggttttat ggttcacaag tcaacaacat ctcccacacc aaagaaaaga
      961 agaaaggaaa agctaaaaag aagagattaa ccaaggcaga tattggaaca ccaagtaatt
     1021 tccagcacat tggacatgtt ggttgggatc caaatacagg ttttgatcta aataatttgg
     1081 atccagaatt gaagaatctt tttgatatgt gtgggatctc tgaggcccag cttaaagaca
     1141 gagaaacatc aaaagttatt tatgacttta ttgaaaaaac aggaggtgta gaagctgtta
     1201 aaaatgaact ccgaaggcaa ggtccaccac agtggagcgc accaccacct cctccaccct
     1261 caagaggagg acctccccct cctcctcccc ctcctcacag ctcaggccct cctccccctc
     1321 ctgcccgtgg aaggggggct cctcccccgc caccatcaag agctcctact gctgcacctc
     1381 cacctccacc tccttctagg cctggtgttg tcgttcctcc acctcctcca aacaggatgt
     1441 accctcctcc accaccagcc ctgccttcct cagcaccttc aggcccacca ccacctccgc
     1501 ctctgtctat ggcagggtcc acagcaccac cacctcctcc accacctccc cctccaccag
     1561 ggccaccacc tccccctggc ctgccttctg atggtgacca tcaagttcca gcttcttcag
     1621 gaaacaaagc agctcttttg gatcaaatta gagagggtgc tcagctaaaa aaagtggagc
     1681 agaatagtcg gcccgtgtcc tgctcaggaa gggatgcact tctagaccag atacgacagg
     1741 gcattcagtt gaaatccgtg tctgatggcc aagagtccac accaccaacc cccgcgccca
     1801 cttcaggaat tgtgggtgcg ctgatggaag tgatgcagaa aaggagcaaa gccattcatt
     1861 cctcagatga agatgaagat gatgatgatg aagaagattt tgaggatgat gatgagtggg
     1921 aagactgatc tatatattat atatatattt ttaaggtgaa atactaaaca ctacttcctg
     1981 tctattgatc tgtaaaatta tcatgtaaat gttctaccaa tttgctgtat atttttgttg
     2041 ccttttttgc tttttttttt aaattaatct gtgcaatacc tcatttaatc tgtaaaggtt
     2101 tgttataatc ctatataaag ctactccctg ttgctgtgtg caagtttaca acaggatgct
     2161 cacgtgattt gtgaatattt tcattctatc aacaagggag tttaattatg tgtgagactg
     2221 acacaaacct taatgtaatt tagttagaat gccagaagga gaacactatt ttcataccct
     2281 actttttctg tacctaaatt ttcttaataa aatttagtat agcactacat tctttttcaa
     2341 gtgatggaaa tttagtttct ttagcccctt cattttgaat atgatgccac atatgaatgt
     2401 tgaagctgat acattgcaca ataccctaga caccactaca ctgatgcagt ttttcaaatt
     2461 ctagtattat gtgttgctta acatcactac agagatgctg ctgaagagag acggcagcgg
     2521 cggcgcacac ctccagtgca gtagtgcctg ccgttggtaa gcagtggcat cgcatccaca
     2581 ggcaggaacc ctgacgaggc ctcactcatg tgcctgtcct tgaccaaggt gatttttatg
     2641 ctgtggcaaa tgtgacaggc tctttttagc agagtttaac actcgttatc acacccgaca
     2701 tagtttctgg tagcattttt caaggtagtt tcgtgcatct aaacaactgt catgcccata
     2761 tttgactcag aggggtgttg gaacagtgct gcaatggaat gcagttatct ttgtattttg
     2821 cactttgtgg gcatcgctgt attcaaagta ccaaccgcca gagtcggagt ttttggcaga
     2881 aatatgcacg aatgctaacc cttgcgtata ccatatattt ttattttgat ggccgctcca
     2941 agtttttgtc aagtaccacg tgtatgtaga gtttacattt ttcttaaaag attgatcgtc
     3001 ccaatgcaaa tttcttagaa tacataactg atttgatagt tttttttaaa taaaacttta
     3061 cagccggcac agttgtacgc atactatatg gtatgttaaa attagggttt ccttgccact
     3121 ttacagtaca ctaatctgcc taaaggtttc atatttacag tgataattat cttacctacc
     3181 tactttaaat aaattttagg tagatgatta cctgatttaa gtgcagacat ttttctcaca
     3241 ttgagttgaa tgcagaatgt agcttcaaat gtattcatta tagtcacaat atccaactaa
     3301 aaattatgct atctagaaat ataccgacca aaatctagta ttgacatgat cttgacaggc
     3361 tggacctgcg agatatggtt tgaattttaa ccagtttatc acataacctc tagagaccat
     3421 gcatataatt attgtcagga ataatttaaa aggttgagtt gctgaaagca gttaagtggt
     3481 gcagtaagat agttaagtta ttcaaagaat gttcccctcc tcgcaagagt aattaaagca
     3541 catctgaaag attctcaatg ctgtgtttcc tgtaaaaaca gtgctctctg ctgctgggaa
     3601 ctctttctgc ttactgtctt ttcatgtggc ttgagctctg tgagaccgtg tagatgaggc
     3661 tggacggcta ctacccacac agttaggggt ctataggtcg gaactacttt aaataaatag
     3721 catcggacgt tcatatttct ttttcttttt gatgtgaaga aaaaaattaa tgcctaaaaa
     3781 tgtctttgag ataatgccaa ttccgatgac ccttaccttt tggccaagaa gaagtttggg
     3841 atctttccag ctaatttgct gtttgatcag aagcttgtct agagagcctc tgagttcttt
     3901 gagttgcata tacattgggg ggatattatt tgccaaaggt aaaattgagt ttattctttt
     3961 tcatacagaa aagggttttg ctttttactt tgtttaaagt ctaaattaca ggagctgtgg
     4021 ggttcagtcc aggcatgaag actaatccac tctgagtcaa gtgtcagttg tacagctccg
     4081 tccccctcgt cttgcactat ggatgccact cttcctgtgc gtcatctgga agcctcatgg
     4141 atatatccag ctctgtgctt gtctggtagc ctttgcgttt aacaaactag catgaggcct
     4201 tttatatctt aaatgctatg tgatagacaa tttcagctag ccacatattg tattatgaaa
     4261 ttcataaaga ttttcaatca tccaattcca tttatcaact gaaattttgt ttagtatgtg
     4321 aatttttttg aaatgtatag taaataagat gttgcactgg tggcaattca tcatggaaca
     4381 taataaaatt aatttgactc aaatagta
//
