LOCUS       XM_039109045            5541 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus von Willebrand factor D and EGF
            domains (Vwde), mRNA.
ACCESSION   XM_039109045
VERSION     XM_039109045.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5541
                     /gene="Vwde"
                     /note="von Willebrand factor D and EGF domains; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins, and 95% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:502731"
                     /db_xref="RGD:1561223"
     CDS             1..5373
                     /gene="Vwde"
                     /codon_start=1
                     /product="von Willebrand factor D and EGF
                     domain-containing protein"
                     /protein_id="XP_038964973.1"
                     /db_xref="GeneID:502731"
                     /db_xref="RGD:1561223"
                     /translation="MKTKCDIPKESARSIIFDVVGVPDTEGLLCVCKAQECSPGGHQF
                     LQSPYRSIHFDSVYLQHSAAQDLICDHSLAPGWYRFLIFDRPAEMPTKCVEMNHCGTQ
                     APIWLSLSESEALPLPGEIKKLTACATWQFLFSPEKDCCLFQIPVSVRNCGDFFVYLL
                     QPTQGCMGYCAEAISDVKLHTCGPGETEIGGGCIGQLSTVLPPPPPGRPKVSVELVGS
                     QVFCRCTFDVSPTNNSVGFLIAWSRLSSQEIKEELRQESTIQAFSILELDGINLRLGD
                     RIFCTAAMFYLEKPDVPSIAVESQGFFAGIKLKPELDTISEDGKEYQLRIESTIPIVC
                     SEFSELDQGCKISLKLKTIEHGKEHLNLNLALSSCHVDLYQNPCADGICSQAIVYYTA
                     VIDFSRDGDRVTDITVEPIVNDIFLWDRYTPDSIQVKIKDVPSAYCYSFTDPHIITFD
                     GRVYDNFKTGTFVLSKSMSRDFEIHVRQWDCGSLHYPVSCNCGFVAKEEGDIVTFDMC
                     SGQLRESPPYLFVKSQESSSRNIRITESYLGRKITIWFSSGAFIRADLSEWGMSITLR
                     IPSLDFRSTLGLCGTFDENPENDFHDKNGIKIDHHVNNYVAFINEWRLLPGKSMFDKI
                     PTSPPFPAKPSYCSCSLGTSTHHLLSHHLGSRSHSEMASSCKDVKHIHFSSLIPDLDI
                     NSEYINSEALIGKINLHAPTEENNLNVSLQEHGHPSLLKPELNLQHPGNKTQNPPTYL
                     SNEKHSEDQEMRNDLQSRWKRHNLKDFHPVFTFQSLGQGNLEEFSYFFPEDHSEVSQQ
                     EFVPSWPTPSGLTEFNVLAICEQTLVNSSIGRLCLPFLGRTLNHVMDMCVKDVLLKDD
                     ITWAEAGVALLENECERHVLEEGKHNVEEYRKSMEGILEVLKCPSLCSGHGQCMDWGC
                     ACFPGYSSYDCSHAHDIVPEITEIENVGFCDIQKQNCVTVRAFGHGFKESLSIKCDVT
                     KLEYNGNEWVLGASVYTQAIFQSSRVVDCQLLPDGQHFDNMDLTAGKPLAKFQLKVSN
                     DGYTFSNPKIMIIYDGACQVCGFYENDSCTMKDNICIIDDVCYNDGDKNPTSSCLICR
                     PQTSNSTWSVLDYNQPPVIQTLQDKLQVFYGEDFEYQFIAWDPEGSEIQFTLDSGPDG
                     AGVSSEGLLTWKTESQTPQKFTLRLKDDCETEATVTLEVTVKSCDCLNGGSCVTDRKF
                     PPGTGAYLCDCLPGFSGDLCEVEASGCQSNPCGLGKCTGGLYGYSCDCPPELTGKNCE
                     TDVDECESWPCFPGVECINVFGSYYCGPCPEGFHGDGNTCHDLSFQPPSKEPLLTKPS
                     FTWSPATTFNKFLHSAGTSHLSIKSVTTQMDNTKKGGVSHQTPAHEYVDHVLSTDLTV
                     DVLEVPAPSGHFLSTNPNSSFGQVDPVQSTTPTETGGHNAQISQPFQNFSGREFTSFT
                     SLTTKAAIAVLPGKSTSTKMSNCTESSCFLGVSCMPTADGHFRCGRCPSGYYGDGVIC
                     RAFCRHSCGRNRECVAPNICKCKPGYTGSNCQTAICHPACKKHGKCIKPNICECPPGH
                     GGSSCDEEHCSPPCQHGGTCLSGNLCTCAYGFVGPRCETLVCNRHCENGGKCVGPDIC
                     QCKPGWYGPTCSTALCDPICLNGGSCYKPNTCLCPGGFFGTQCQNAVCHPPCKNGGLC
                     MRNNVCTCRGGYTGKRCQTSICEPMCMNGGKCVGPNICSCASGWSGKWCNTPICLQKC
                     KNGGECVAPSMCHCPSTWEGVQCEKPICTQKCLYGGRCAFPGVCSCRTGYSGVKCEKK
                     IQMKHR"
ORIGIN      
        1 atgaaaacca agtgtgacat tcctaaagaa agtgcaaggt caatcatctt tgacgtggta
       61 ggagtccctg atactgaggg ccttttgtgt gtgtgcaaag ctcaggagtg ctctcctgga
      121 ggccaccagt ttcttcagag tccttacaga agcattcact ttgactcagt gtatctccag
      181 cattcagctg ctcaagacct gatctgtgac cattctctcg ctcctggatg gtaccgattt
      241 ctcatctttg acagacctgc tgagatgccc accaaatgcg ttgagatgaa ccactgtgga
      301 actcaggccc ccatctggtt gtctctgagt gaatcagaag ccctacctct tcctggggag
      361 atcaagaaac tgaccgcttg tgccacttgg cagtttttgt ttagccctga aaaggactgc
      421 tgcctctttc aaatccccgt atctgtgaga aactgtggtg atttttttgt gtacttactg
      481 cagcccactc agggatgtat gggctactgt gctgaagcta tttctgatgt gaagttacac
      541 acgtgtggcc ctggagaaac agaaattgga ggtggctgta ttggtcagct ctccacagta
      601 ctgcctcctc ctcctcctgg caggcccaag gtctcagtgg agcttgtggg ctcccaggtg
      661 ttttgtaggt gtacttttga tgtttcccca acaaacaact cagtaggatt tctgatagcc
      721 tggtctaggc tttcttccca agaaatcaaa gaagaactga gacaggagag cactattcag
      781 gcgttctcga ttttagagct tgatggcata aatctccgac ttggagatag gatattctgc
      841 actgctgcca tgttttactt ggagaaacca gatgtaccaa gtatagctgt tgaaagccaa
      901 ggattttttg ctggaattaa gttaaaacct gaactggaca ctatatcaga agatggaaaa
      961 gaataccagc tgaggataga gagtacaatt cctattgttt gctctgaatt tagtgagctt
     1021 gatcaaggat gcaaaatctc attaaaactg aaaaccatcg aacacggtaa agaacacctc
     1081 aatttaaatt tggcattgtc ttcgtgccat gtggaccttt accagaaccc ttgtgccgat
     1141 ggaatatgta gccaggctat agtgtattac actgctgtga tagacttttc ccgggatgga
     1201 gacagagtta cagacatcac tgtggaacct atagttaatg atattttcct gtgggacaga
     1261 tacactccag acagcatcca ggtcaaaatc aaggatgtcc cgtctgctta ctgctattca
     1321 tttactgacc cacacatcat tacgtttgat ggcagggtat atgacaactt caagactgga
     1381 acgtttgtgc tttctaagag tatgtcacgt gattttgaaa tccacgtacg tcagtgggac
     1441 tgtgggagct tacactatcc tgtgtcatgt aactgtggct ttgttgcaaa agaagaaggt
     1501 gacattgtta cttttgatat gtgcagtggg cagttacgtg aatctccgcc atatttgttt
     1561 gtaaagagcc aagaatcatc atcaagaaat atcagaataa ctgagtctta tttaggaaga
     1621 aaaatcacga tttggttttc ctccggagcg ttcatccgtg ctgacctcag tgagtggggt
     1681 atgagtataa cgctaagaat ccctagttta gacttcagaa gcacattggg gctctgtggc
     1741 accttcgatg aaaacccaga aaacgatttc catgacaaga atgggatcaa aattgatcac
     1801 cacgtcaaca attatgtcgc ttttatcaat gaatggaggc ttctaccagg aaaaagcatg
     1861 tttgacaaaa taccaacatc cccgccgttt cctgcaaaac catcctactg cagctgttcg
     1921 ctgggaacct ccacgcacca tctgctttct caccatctgg gcagcaggtc tcattcagaa
     1981 atggcttcca gctgcaaaga cgtcaagcac atccacttct cttccttgat tccggaccta
     2041 gatattaact ctgaatatat caattcagaa gctcttattg gaaaaataaa ccttcatgca
     2101 cctacggaag aaaacaattt gaatgtctca ctacaggaac atggccaccc aagcctgctc
     2161 aaaccggagt taaatttaca gcatcctggg aataagactc aaaatcctcc tacatatttg
     2221 agtaatgaga agcattcaga ggaccaggaa atgaggaatg atctacaaag cagatggaaa
     2281 cgacacaatc tgaaggactt tcatcccgta tttactttcc agagtcttgg acaaggcaac
     2341 ctggaagagt tttcttattt ttttcctgag gaccactctg aggtcagcca gcaggagttt
     2401 gtcccctcat ggcccacacc atcgggcctc actgaattca acgtcttagc aatctgtgag
     2461 cagactctag tcaactccag cattggaagg ctctgtcttc cctttcttgg caggacacta
     2521 aaccatgtta tggacatgtg tgtgaaggat gttctgttaa aggacgacat tacctgggca
     2581 gaggcaggag tggccttgtt agaaaatgaa tgtgagagac acgttttaga agaaggaaaa
     2641 cacaacgtag aagaatacag gaagtcaatg gaaggcatcc tagaagtgtt aaaatgtccc
     2701 agtttgtgca gcggacatgg acagtgtatg gactggggct gcgcatgttt tccaggctac
     2761 agttcctatg actgcagtca cgcacatgac atagttcctg aaattaccga gattgagaac
     2821 gttggattct gtgatattca gaagcagaac tgtgtcacag tgagagcttt tggtcatggc
     2881 ttcaaagagt cactatccat caagtgtgac gttactaaac tggagtataa tggcaatgaa
     2941 tgggtgcttg gagccagtgt ctacacacaa gcaatctttc aaagtagcag agtggttgac
     3001 tgtcagctgc tcccagatgg ccagcatttt gataacatgg atctaacagc agggaaaccc
     3061 ttggcaaagt ttcaattaaa ggtatctaat gatggttaca cattcagtaa tcccaagata
     3121 atgattatat atgatggcgc ttgtcaagtt tgtggtttct atgaaaatga ttcatgcact
     3181 atgaaggata atatttgtat tattgatgat gtctgctaca atgatgggga taaaaatcct
     3241 accagctctt gtttgatttg tagacctcaa acttcaaatt ctacttggtc agttttagat
     3301 tataaccagc cccctgtgat tcaaacactg caagacaaat tacaggtgtt ttatggggaa
     3361 gactttgaat accagttcat cgcctgggat ccagaaggct ctgagataca gtttacacta
     3421 gattctggtc ctgatggtgc aggtgtttcc tctgaaggac ttcttacatg gaaaacagag
     3481 tcacagactc ctcagaaatt cactctccgt cttaaggatg actgtgagac tgaagctaca
     3541 gtcacactgg aggtgactgt gaagtcttgc gactgcttga atggtggttc atgtgtgact
     3601 gatagaaaat ttcctccagg aactggagcc tacctttgtg actgcttgcc tggtttttct
     3661 ggtgatcttt gtgaggttga agccagtggg tgccagtcaa acccctgtgg ccttgggaaa
     3721 tgcactggag gcttatacgg ttactcctgt gactgtcctc ctgagctcac aggcaagaac
     3781 tgtgagacag atgtagatga atgtgaatcc tggccttgtt tcccaggtgt ggagtgcatc
     3841 aatgtctttg gttcctatta ttgtggtcca tgtccagaag ggtttcatgg tgatggaaac
     3901 acatgtcatg acttgagttt tcaaccaccg tcaaaggaac ctttactgac aaaaccaagc
     3961 tttacttgga gtcctgcaac aactttcaac aaattcttac actcagcagg cacatcccac
     4021 ttgtcaataa aatcagtcac aactcaaatg gataatacaa agaagggtgg tgtttctcat
     4081 cagacaccag ctcatgagta tgtggatcac gttctcagta cagatctaac tgttgacgtg
     4141 cttgaagttc cggcacccag tggtcatttt ttaagcacca atcctaacag ttcttttggc
     4201 caggtagatc ctgtccagag cactactcca acagagaccg gagggcataa tgctcaaatt
     4261 agccaacctt tccaaaattt ctctgggcga gagtttacat cgtttacatc attgacaact
     4321 aaagcagcaa ttgctgtttt gccaggaaag tctacatcaa ccaaaatgtc aaattgcaca
     4381 gaatcatctt gtttcctggg tgtttcctgt atgccaaccg cagatggtca cttcaggtgt
     4441 ggtcgctgcc cctctgggta ttacggagat ggtgtcattt gcagagcatt ttgtagacac
     4501 tcttgtggaa gaaacaggga atgtgttgcc ccaaacatat gcaaatgtaa accaggttac
     4561 actggttcca actgccaaac tgccatctgt caccctgctt gcaaaaagca tggaaaatgc
     4621 attaagccta acatctgtga atgtcctcca gggcatggtg gatcctcctg cgatgaagaa
     4681 cattgtagcc ctccttgcca acatggtggc acgtgcttgt ctgggaatct ctgcacttgt
     4741 gcttatggct ttgtaggacc aaggtgtgaa acattggtct gtaacaggca ttgtgaaaat
     4801 ggaggcaaat gtgttggacc agatatttgt cagtgcaagc ctggctggta tggacccacg
     4861 tgtagtacag ctctttgcga tcccatttgc ctcaatggtg gttcctgtta taagccaaac
     4921 acgtgccttt gccctggtgg attctttgga acacagtgcc agaatgctgt ctgtcaccct
     4981 ccctgtaaaa atggcggcct atgcatgagg aataacgttt gcacctgtcg tggtgggtac
     5041 accggaaaaa gatgccagac aagcatctgt gagcctatgt gcatgaatgg tggaaaatgt
     5101 gtgggaccga atatttgttc ctgtgcttct ggttggagtg gaaaatggtg taacacaccc
     5161 atctgccttc agaaatgtaa aaatggcggt gaatgtgtag ctcccagcat gtgccattgc
     5221 ccctccacct gggaaggggt acagtgtgag aaacccattt gtactcagaa gtgtctttat
     5281 ggaggaagat gtgcatttcc tggtgtatgt tcctgccgca ccggatactc tggagtcaaa
     5341 tgtgaaaaaa agatacagat gaaacatcgt tgagaaacgc gtactgttta caaacctcta
     5401 tcattagaaa ttcagtatta ttcagaaaga gtcgaagata attttggaac ttatttgaat
     5461 attgcttaaa gtattataaa gacaaaagaa agtaataaaa tgtgcaatga tctaagttgt
     5521 caatatcaaa gaaaaacaaa a
//
