LOCUS       NM_001413944            4463 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus von Willebrand factor C domain containing 2 like
            (Vwc2l), transcript variant 1, mRNA.
ACCESSION   NM_001413944 XM_006245123
VERSION     NM_001413944.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Schwenk,J., Harmel,N., Brechet,A., Zolles,G., Berkefeld,H.,
            Muller,C.S., Bildl,W., Baehrens,D., Huber,B., Kulik,A., Klocker,N.,
            Schulte,U. and Fakler,B.
  TITLE     High-resolution proteomics unravel architecture and molecular
            diversity of native AMPA receptor complexes
  JOURNAL   Neuron 74 (4), 621-633 (2012)
   PUBMED   22632720
REFERENCE   2  (bases 1 to 4463)
  AUTHORS   Miwa,H., Miyake,A., Kouta,Y., Shimada,A., Yamashita,Y.,
            Nakayama,Y., Yamauchi,H., Konishi,M. and Itoh,N.
  TITLE     A novel neural-specific BMP antagonist, Brorin-like, of the Chordin
            family
  JOURNAL   FEBS Lett 583 (22), 3643-3648 (2009)
   PUBMED   19852960
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Nov 10, 2022 this sequence version replaced XM_006245123.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2334972.1,
                                           SRR26360194.1465868.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840105
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-614               JAXUCZ010000009.1  79702954-79703567
            615-1084            JAXUCZ010000009.1  79705777-79706246
            1085-1214           JAXUCZ010000009.1  79728633-79728762
            1215-4463           JAXUCZ010000009.1  79893902-79897150
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q33"
     gene            1..4463
                     /gene="Vwc2l"
                     /gene_synonym="RGD1565501"
                     /note="von Willebrand factor C domain containing 2 like"
                     /db_xref="GeneID:501160"
                     /db_xref="RGD:1565501"
     exon            1..614
                     /gene="Vwc2l"
                     /gene_synonym="RGD1565501"
                     /inference="alignment:Splign:2.1.0"
     exon            615..1084
                     /gene="Vwc2l"
                     /gene_synonym="RGD1565501"
                     /inference="alignment:Splign:2.1.0"
     CDS             695..1363
                     /gene="Vwc2l"
                     /gene_synonym="RGD1565501"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; von Willebrand factor C domain-containing
                     protein 2-like"
                     /codon_start=1
                     /product="von Willebrand factor C domain-containing
                     protein 2-like isoform 1 precursor"
                     /protein_id="NP_001400873.1"
                     /db_xref="GeneID:501160"
                     /db_xref="RGD:1565501"
                     /translation="MALHIHEACILLLVIPGLVTPAAISHEDYPADEGDQASSNDNLI
                     FDDYRGKGCVDDSGFVYKLGERFFPGHSNCPCVCALDGPVCDQPECPKIHPKCTKVEH
                     NGCCPECKEVKNFCEYHGKNYKILEEFKPSPCEWCRCEPSNEVHCVVADCAVPECVNP
                     IYEPEQCCPVCKNGPNCFAGTTIIPAGIEVKVDDCNICHCHNGDWWKPAQCSKRECQG
                     KQTV"
     exon            1085..1214
                     /gene="Vwc2l"
                     /gene_synonym="RGD1565501"
                     /inference="alignment:Splign:2.1.0"
     exon            1215..4463
                     /gene="Vwc2l"
                     /gene_synonym="RGD1565501"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtctgcaaa ctgctcccag cgatgccaaa ccccagttaa agttgcgcct ttgcttcaca
       61 tccacagtta gaatcttccg gtgtgtgagg agggattcag tcaacatact gtggacgatg
      121 ccgatgcttc tgctggtgga gtgggcttta agcttcagta tgctgtttct gtttgtgatc
      181 ctcagagcct agccaagtca cctctactgc cgtagcaaac actgtgtaag tgaactcatg
      241 tgtggaggag gcgtaatcag ccaggaaatt tcatagaagg atctaagaaa acgctaaaaa
      301 taagttcaac atgattctgc taccggggtc cagatttcca caggaccagc actgcttctg
      361 gctttgaatt ctgaagacag gtccaaagcg tatttcttat gtgtgtctgc tgtgttcctg
      421 tctggaaggg tgggagactg cttcttggct gtgttttgaa atggggaata gagaggacgg
      481 attgccttta attcatgcct gaaaatgcat tctttgggtg actaaagagg accggcttac
      541 ctaagagata cctgaccttt aagttcagat tggtctgtga cccccagcac caccattaac
      601 ctcagagtga ctagcccacc cctcttgcat tcccatggaa ggagctgagt gtgtttaata
      661 ttaggagaac atccagaagt ctgtgaggag ggggatggct cttcatattc atgaagcttg
      721 catacttcta ttggtcatcc ctggattggt cacccctgct gccatcagtc acgaagacta
      781 tcctgctgat gaaggtgacc aggcttccag taatgacaat ctgatctttg atgactatcg
      841 agggaaaggg tgtgtggatg acagcggctt tgtttacaag ttgggagaac ggtttttccc
      901 agggcattcc aactgtccgt gtgtctgtgc cctagatgga cctgtctgtg accagccgga
      961 atgccctaaa attcatccga aatgtacaaa agtggaacac aatggatgct gtcctgaatg
     1021 taaagaagtg aaaaactttt gtgaatatca tgggaaaaat tacaaaatct tggaggaatt
     1081 taagccctct ccatgtgaat ggtgtcgctg tgagcccagc aatgaagttc actgtgttgt
     1141 agcagactgc gcagttccag agtgtgtcaa cccaatctat gaaccagagc aatgttgtcc
     1201 tgtctgcaaa aatggtccaa actgctttgc aggaactaca ataattccag ctggcattga
     1261 agttaaagtg gacgactgta acatctgtca ctgtcacaac ggggattggt ggaaacccgc
     1321 tcagtgttca aagcgcgaat gccaaggcaa gcagactgtc tagggcaaat tcccgaccgg
     1381 tgacaagtgc taagagggga tgctatggct tctacactgc acacatatcg cactcaacag
     1441 aataagcaag caaacccctg ccagctacaa cacggtcacc agcaaaatct tctggggttg
     1501 acaaaagtga atattttacg aagaggaaat ctctctctct ttatcttgct atataaaata
     1561 cacatagcat atagctatct aaagcacttt tataattgtc aatgcttgat ggtgactaga
     1621 caaccaagat ttcttggaca agaaagaaag aacacagcct tggacaggct cattcccagg
     1681 tgatgcctct gacctgccag ctcacgtccc ttgattgact ccatctttac tccggtgtgc
     1741 accctacatt tttctcttgt atgttttcta cctttggaat ctaaaggggt tagattggac
     1801 tacacggtaa agttttgtgt tttcatgaga attgtttgat aaagaaactt tgtgggggaa
     1861 gtctccttcc agaggggaaa gattgaagag tgtacaagcc ttgactctct tgggggtagt
     1921 tatgtttgta ggctaagaaa cagagaggta aactgggtcc tctgcagatc aggcgagaaa
     1981 caggtataca ttggggctca ctgttgattc ttacagacca cacatttcac acataaaatt
     2041 ttgaaactgc ctatcagaac caagtaggcg agcgagaaca ccatgactga agaacccaca
     2101 gaaacgggtt ttcaaaagtg tagcatttaa tcactggact tcttcatgat gccagctttg
     2161 agcttggttt ataattaaac acacagcaaa gcccaccttg tcatcgggcg atataaatac
     2221 cagaaccagg gtgagtagcc ccactgtgaa tcaatctttc taaacatttc tgactttcaa
     2281 gttccaattg gctgaaagcc agtcctatac acagcagttt ttatggttca ggactgtgtt
     2341 tgccacgttc cagtaacaac cactcagccc taaatctaaa atccagattc aggacactct
     2401 ttccacctta agtgctgatg taaattaaag attagggtag agtgagtctt gcacaataca
     2461 atttcattag tttaacattt tttaatgtat ataataggta ctaagcgatt aaagagaacc
     2521 tttgaagagt ctcaaggttg ccctggtaat gctgctagtc taataatgga aattaataat
     2581 aataaaaata ataataaaag aaatacacag ggtatctgat gccacctcca gtataaaatt
     2641 cacagctctg agaccacatg gtctagtcac ttatcccact atctgtccta aaaaccttgg
     2701 tgcagatcta atagggtcct taggaaactt caaagtattc ttcatctcca gttgtctttc
     2761 tttttcttgt tttctgcttc cacccctaat ctgcgtttca tgtggcttct gtgaaggacc
     2821 acgttacatg gacggatatg ctaagcgaca ttcttggatt tcttccacta ggtatcagga
     2881 gcacctacct agttatatca accaaatgtc cccagactta gccaaaagtc cttgaggggt
     2941 gtgggtaggg aacaaagtgt tacctggttg ggaagctgtg tcatccagct atatcatgtc
     3001 tgtcatataa caagctggga agactgcaca cacatgactt tgttgagccc ctgagccctt
     3061 tggatcatgc acaaacagta accccaaggg tcactctcct ccctgttaag tgatgtttct
     3121 aacacccact cttcggacac cagtttcttt agtctcataa attagttttc tcatttaaaa
     3181 ttgtcagcct ctcctccctg gaagcactgc ctgtcatcaa gaaagagttg tcatttccaa
     3241 aattaatgtg ctgacgagcc agacctgaca cttttacaca cactgtgctt gtgttatgat
     3301 acaaataacc atcctggtgc catccgagga agaacatcca gccgccttcc cttagaacac
     3361 caatttgctg agaggttggt gcctttcagt tgccactatg gatacatcat agagacagcc
     3421 atgaatcatt catgagcaat tctgcatgat ttatgcctac actcaaaagc aaaggcactc
     3481 catacttccc cccatgtcta gacagagttg tactgtacgg ctttctttgc tctaaggttg
     3541 cctaacacca gttccaaaaa cccacattct tggaaagaca taacaatcat tatcattatt
     3601 acaataaatg acaggaataa ggtcaaaaac tgagaaaaat atactgctaa tagagagacc
     3661 catgtagcct agacccttat ctactattaa ggagttacta tgttcttagg aacagaatgg
     3721 gcaacctgga agccaaggta cagaaatttt gtatctgagc ccactgacat tcccagcacg
     3781 gactgggtag gctagagtgt aactcgctca acattcttca gagagctttg ggctggcagc
     3841 agatcaatag tggcctctat gacaaacttg agcaggagat ttttatcact gtttatgtcg
     3901 ggtttgggct tggtttcttt tgtctgattg ctttgttctt ctgactgtgc tcggcttcac
     3961 tacagtatgt cccttaacgc tcccaagcac caatgttttc ccaccttaag cgagagacag
     4021 agctatactg tggcaggatt tctcataaat ggataaacat tcaacaactt cctactacca
     4081 ggtcacggag aaattctttc caagatcaga acatcagagt tcttctggtc taccattttg
     4141 ttattttttt taaggttttg attacagcca cacggtcgcc tctgtgttac tatttctctt
     4201 ctgcctttgg ctctagactt taaattcagc tatgtttaaa taaggggtca gtatctggtt
     4261 tgtcagctga tgcctgttaa actgattcag ttcctaaaac ctttgaaaaa tggtgtgcct
     4321 gaaaactagt gagagagagg gggggaaaaa acaaaccact aaatactaaa ctgtaaaaaa
     4381 gggattctag caacaatatt tgatgtgtaa aagaatatat tattaaaaaa ttattttgtt
     4441 aaatataaag tgtgttaacc agt
//
