LOCUS       NM_001198653            4100 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus von Willebrand factor A domain containing 3A
            (Vwa3a), transcript variant 1, mRNA.
ACCESSION   NM_001198653
VERSION     NM_001198653.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4100)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                JAXUCZ010000001.1  184725170-184725243
            75-198              JAXUCZ010000001.1  184736473-184736596
            199-323             JAXUCZ010000001.1  184741824-184741948
            324-401             JAXUCZ010000001.1  184742052-184742129
            402-456             JAXUCZ010000001.1  184745283-184745337
            457-555             JAXUCZ010000001.1  184748006-184748104
            556-662             JAXUCZ010000001.1  184748922-184749028
            663-788             JAXUCZ010000001.1  184752933-184753058
            789-897             JAXUCZ010000001.1  184753737-184753845
            898-963             JAXUCZ010000001.1  184754022-184754087
            964-1089            JAXUCZ010000001.1  184757450-184757575
            1090-1225           JAXUCZ010000001.1  184758008-184758143
            1226-1329           JAXUCZ010000001.1  184758241-184758344
            1330-1410           JAXUCZ010000001.1  184759224-184759304
            1411-1505           JAXUCZ010000001.1  184759661-184759755
            1506-1625           JAXUCZ010000001.1  184761099-184761218
            1626-1700           JAXUCZ010000001.1  184764519-184764593
            1701-1845           JAXUCZ010000001.1  184764778-184764922
            1846-2041           JAXUCZ010000001.1  184766177-184766372
            2042-2112           JAXUCZ010000001.1  184768280-184768350
            2113-2262           JAXUCZ010000001.1  184771887-184772036
            2263-2332           JAXUCZ010000001.1  184773557-184773626
            2333-2440           JAXUCZ010000001.1  184774260-184774367
            2441-2538           JAXUCZ010000001.1  184775205-184775302
            2539-2676           JAXUCZ010000001.1  184775757-184775894
            2677-2785           JAXUCZ010000001.1  184777207-184777315
            2786-2930           JAXUCZ010000001.1  184780027-184780171
            2931-3075           JAXUCZ010000001.1  184780438-184780582
            3076-3227           JAXUCZ010000001.1  184781220-184781371
            3228-3351           JAXUCZ010000001.1  184782760-184782883
            3352-3449           JAXUCZ010000001.1  184785276-184785373
            3450-3515           JAXUCZ010000001.1  184785627-184785692
            3516-4100           JAXUCZ010000001.1  184786086-184786670
FEATURES             Location/Qualifiers
     source          1..4100
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..4100
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /note="von Willebrand factor A domain containing 3A"
                     /db_xref="GeneID:293449"
                     /db_xref="RGD:1311670"
     exon            1..74
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..3501
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /note="isoform 1 is encoded by transcript variant 1; von
                     Willebrand factor A domain-containing protein 3A"
                     /codon_start=1
                     /product="von Willebrand factor A domain-containing
                     protein 3A isoform 1"
                     /protein_id="NP_001185582.1"
                     /db_xref="GeneID:293449"
                     /db_xref="RGD:1311670"
                     /translation="MKKHRWSMDRNTDRDPQKQLNQKTMNDVTQNSQDGLLVTHVNQT
                     QDLLRLQRSETQTSALEDSEDWLAMHSLKFEKLTLADLISQGTVELEDQNNAVPKVHF
                     TTQTIYHFTSRLSDTIELYQQRMRWLTENSKKAFGLIKGSRVGLLIDSSQVSSGPQTE
                     EFQNDLTSLIDEQLSLKEKLYVLTFGGTTNFLWPDPVEVSASTLQELKLWVKTLQPEG
                     SSNLLQALKKVLARKELNSLVAILRSCPDQPSEFLSDFIQQSTLGRSLFIHIVTYKCD
                     DHVPSAILKNLTDALGGHYHCYSPESELYTSRDVDELLAETHKAQGLFSQLQALCHNN
                     PCEELSCMIEEISTEIAKGPFTSLLPKPPKHEAPLTIKFPDLDKTSAEWLKINGLKAK
                     KLGLYQVLAPNAFNPVEEFVPILQKTVGATIHEKAMVQFEWHDGTVKNIHVDPPVLFE
                     YQKQLGKAVQIYEKRLQWLSLTSRRFWGTVCQRRVVILLDVSVTNSMFIIHIQHSLRL
                     LLEEQLSNKDYFNIIAFGSTVESWRPEMVAVSHDNLQRAWRWALGLQCQGSRNVLGAL
                     RKAIEVDFKDKTKHESQGIYLFTGGVPDQDVHILSAYVAEACGGCDLQLNVCLFYVGE
                     PQMNTTPPACYASRTDTAAAYKEVTQAACGRFHWFGETGIYESDDSNAIVSEIEKALN
                     YSQKCAFLVASLKNHSGKELLTAALQKDKPRTLQQSQPKKLYPPKPTAPSVARMSIKD
                     DVDGETSSQLKALRCHPLNAATQPGKEGTVEQRTKANPRTKAKLFLFYTESGNSVGSV
                     YKRYSQGKPIRRINSSIELPRKDTLCSSQEWTATCGLKRLKLELSKCLGPNCRYQKSV
                     RGSALARHCSLFPSIEINGVVRHIQWTLREMETYITGLEKVMRCYVQRLHWLLSGSRR
                     LFGTILESNVCILLDTSGSMGPHLQWMKTELVLLIWEQLRKHCDRFNLLSFARDPQPW
                     QNTLVESTDAACHEAMQWVAHLQAQGSTSVLTALMKAFSFQDVQGLYLLTDGKPDTSC
                     SLILDTVQRFQKERGVKVHTISLTSTDRAAIEFLRKLASLSGGRYHCPVSDEALSRIQ
                     GLLARGFIEERDPKLPLFEGDDLKILTQEFTKARNLLKQAQVFRSQLLKKNGMQSKVT
                     AC"
     exon            75..198
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            199..323
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            324..401
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            402..456
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            457..555
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            556..662
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            663..788
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            789..897
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            898..963
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1089
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1090..1225
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1226..1329
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1410
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..1505
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1625
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1626..1700
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1701..1845
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..2041
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2042..2112
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2262
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2263..2332
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2333..2440
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2441..2538
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2539..2676
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2677..2785
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2786..2930
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            2931..3075
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            3076..3227
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            3228..3351
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            3352..3449
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            3450..3515
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
     exon            3516..4100
                     /gene="Vwa3a"
                     /gene_synonym="RGD1311670"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagcttgga gcagagaggt cctgctgtgc cttctcccaa agatggagat ataaatgaag
       61 aaacacagat ggagcatgga cagaaacact gacagagatc cacagaagca actaaaccag
      121 aagactatga atgacgtcac ccaaaactca caggatgggt tgctggttac ccatgttaac
      181 cagacccagg acttactgcg gctgcagaga agtgagaccc agacatcagc tctggaagac
      241 tctgaagact ggctcgcaat gcacagttta aagtttgaga aactcacctt ggctgacctg
      301 ataagccagg gcacggttga gctggaggat cagaacaatg ctgtgcccaa agtgcatttc
      361 accacccaga ccatctacca ctttacatca aggctttctg acactattga actctatcag
      421 cagaggatgc ggtggctaac cgagaacagc aagaaggcat ttggcctcat caagggatca
      481 agagtgggcc tcctcataga ttcatcgcag gtcagcagtg gccctcagac cgaggaattc
      541 caaaatgacc tcacaagtct cattgatgag cagctgagcc tcaaggaaaa gctgtatgtc
      601 ctgacctttg gcggcaccac caacttcctc tggccggacc ctgtggaagt cagtgcttca
      661 accctccagg aactcaagct ctgggtaaag acactgcaac ccgagggaag cagcaacctg
      721 ctacaagcct tgaagaaagt ccttgctcga aaggagctga actctctggt ggccatactg
      781 agaagctgtc cagatcagcc atctgaattc ctgtctgact tcatccagca gtccaccctg
      841 ggacggagcc tcttcattca catagtcacc tacaaatgtg atgatcatgt gccctctgct
      901 attctgaaga acctcacaga tgcccttggg ggtcactacc actgctacag cccagagtca
      961 gagctctata ccagtaggga tgtggatgag ctcctggcag aaacccacaa ggctcaaggc
     1021 ctcttcagcc agctgcaagc cctgtgccac aacaacccat gtgaagagct gtcctgcatg
     1081 atcgaagaaa tttctacaga gattgccaaa gggcctttca ccagtctgtt gcctaagcct
     1141 ccaaagcatg aagctcctct caccatcaag ttcccagact tggacaagac ttctgcagaa
     1201 tggctgaaga tcaatggtct gaaagccaag aagttaggcc tttatcaggt tctggcaccc
     1261 aacgccttca atcctgtgga agaatttgtg cctattcttc agaaaacagt aggagctact
     1321 atccacgaga aggcaatggt acaatttgag tggcatgatg ggacagtgaa gaacatccat
     1381 gtggacccgc ccgtcctctt tgagtaccag aagcagctcg ggaaagctgt gcagatatat
     1441 gagaagcggc tccagtggct gtccctgacc agcagaagat tctggggcac tgtctgtcaa
     1501 agaagggtgg ttatactgct ggacgtctcg gtgaccaatt ccatgttcat tattcatatc
     1561 cagcactccc tgcgactact gctagaagag caactgtcca acaaagacta cttcaacatc
     1621 atcgcgtttg gaagcacagt tgagagctgg aggcccgaga tggttgctgt gagccatgac
     1681 aacttacaaa gagcctggcg gtgggccctg ggcctgcagt gtcaaggaag cagaaatgtc
     1741 ctcggagccc tgcggaaggc catagaagtg gatttcaagg acaaaaccaa acatgagtct
     1801 cagggcatct acctcttcac tgggggtgtc cctgaccaag atgtgcacat actcagcgcc
     1861 tatgtggcag aggcctgtgg gggttgtgac ctccagctaa atgtctgtct cttctatgtg
     1921 ggcgaaccac agatgaacac cacgccccct gcctgctatg ccagccgtac tgacactgct
     1981 gctgcctaca aagaggtcac ccaggctgcc tgtggtcgct tccactggtt tggagagaca
     2041 ggtatttatg agagtgatga tagcaacgcc atcgtatctg agatagaaaa agccctcaac
     2101 tactcccaaa agtgtgcctt ccttgtggcc tccctgaaga accattcagg aaaagagctg
     2161 ctgactgcag ccctccagaa agacaagcca aggactctgc agcaaagtca gcccaagaaa
     2221 ctctatcctc ccaagcccac agccccctcg gtggccagaa tgagcattaa agatgacgtg
     2281 gatggagaaa cgagctccca gctgaaagct ctgaggtgtc accccctcaa tgccgcaacc
     2341 caacctggca aggaagggac ggtggaacag aggacgaagg ccaaccccag aacaaaagcg
     2401 aagctctttc tgttctacac agagtctggg aatagtgtgg gttctgtgta caagaggtac
     2461 agtcaaggaa aacccatcag aaggattaat tcttccattg agctgcccag gaaggacact
     2521 ctatgctcaa gtcaagagtg gacagccact tgcgggctga agagactgaa actggagctc
     2581 tccaaatgcc tcggtcccaa ctgtagatac caaaagtcag tacgggggtc ggcactggcc
     2641 agacactgca gtctcttccc cagtatagag atcaatggag tagtgagaca catccagtgg
     2701 acgctgcggg agatggagac gtacatcaca ggcttggaga aggtgatgag gtgctatgtg
     2761 cagaggctac actggctgct gtctgggagc cgcaggctgt ttggcaccat cttagaaagc
     2821 aatgtgtgca tcctgctgga cacttcaggg tccatgggcc cccacttgca gtggatgaag
     2881 acagagctcg ttctactgat ttgggagcag ctgaggaaac actgtgaccg ttttaacctg
     2941 ctcagctttg caagggaccc acagccatgg caaaacaccc tggtagaaag cacagacgct
     3001 gcgtgtcacg aggctatgca gtgggtggcc cacctgcaag cccaggggag cacctcagtc
     3061 ttaacagctt taatgaaagc cttcagcttt caggatgtgc aagggctgta tctcctgacg
     3121 gatgggaagc cagacacaag ctgcagcctt atactcgaca ctgtccaaag gttccagaag
     3181 gagagaggcg tgaaggtgca taccatctct ctgaccagca cagacagagc agcaattgag
     3241 ttcctgagga agctggcttc cctcagtggg ggccgttacc actgccctgt tagtgatgag
     3301 gccctcagca gaattcaagg cttgctcgcc agaggcttca ttgaggaaag ggatcccaag
     3361 ttgccactgt ttgaaggtga tgacttaaaa atactgaccc aggagttcac caaggctaga
     3421 aacctcctca agcaagccca ggtcttcaga tcccagctcc tgaagaaaaa tggcatgcaa
     3481 tcaaaggtta ctgcttgcta gagatatgct ctcagtgact cctggttagt gtcaaggcac
     3541 agctcagata gcatcgttcc actaggaaga tgtccctggg acctatccag gacctccagg
     3601 aacttccgat gcttccggct ttcctcttct tctggacgtc ctgagcacga tgcctcttgt
     3661 tgcattcagc actgcaggcc accatgcctg cctaagcttt cttgaccatg gttccgccat
     3721 gaaactgctg tcttaaccat ccatggatcc ccagacccta ccatggagca gtcacgtggt
     3781 aagcagtgag caaccacctg gatgtgacag cccggccctg gattctcctg gttcctccct
     3841 gtaccaccca tccacagccc aaggcagcta ccagcagccc agcttgggga aggacagcca
     3901 agagccaggt ccactacacc tgctaactgc agtccagagc aaatgctctg ctctgctaca
     3961 gcctctgaaa atcagacttc accctttgag cccagctatg ctgtgtccaa acgagtgggg
     4021 gcatcgtgtg ttagatcagc tgggatcgtt tgctaaaatg tgaaaattgc ttttgctaat
     4081 agagtcaaaa taagtttaaa
//
