LOCUS       NM_001377194             964 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus vesicle transport through interaction with
            t-SNAREs 1B (Vti1b), mRNA.
ACCESSION   NM_001377194 XM_003750196
VERSION     NM_001377194.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Kuliyev,E., Gingras,S., Guy,C.S., Howell,S., Vogel,P. and
            Pelletier,S.
  TITLE     Overlapping Role of SCYL1 and SCYL3 in Maintaining Motor Neuron
            Viability
  JOURNAL   J Neurosci 38 (10), 2615-2630 (2018)
   PUBMED   29437892
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Milochau,A., Lagree,V., Benassy,M.N., Chaignepain,S., Papin,J.,
            Garcia-Arcos,I., Lajoix,A., Monterrat,C., Coudert,L.,
            Schmitter,J.M., Ochoa,B. and Lang,J.
  TITLE     Synaptotagmin 11 interacts with components of the RNA-induced
            silencing complex RISC in clonal pancreatic beta-cells
  JOURNAL   FEBS Lett 588 (14), 2217-2222 (2014)
   PUBMED   24882364
REFERENCE   3  (bases 1 to 964)
  AUTHORS   Pirooz,S.D., He,S., Zhang,T., Zhang,X., Zhao,Z., Oh,S.,
            O'Connell,D., Khalilzadeh,P., Amini-Bavil-Olyaee,S., Farzan,M. and
            Liang,C.
  TITLE     UVRAG is required for virus entry through combinatorial interaction
            with the class C-Vps complex and SNAREs
  JOURNAL   Proc Natl Acad Sci U S A 111 (7), 2716-2721 (2014)
   PUBMED   24550300
REFERENCE   4  (bases 1 to 964)
  AUTHORS   Itakura,E., Kishi-Itakura,C. and Mizushima,N.
  TITLE     The hairpin-type tail-anchored SNARE syntaxin 17 targets to
            autophagosomes for fusion with endosomes/lysosomes
  JOURNAL   Cell 151 (6), 1256-1269 (2012)
   PUBMED   23217709
REFERENCE   5  (bases 1 to 964)
  AUTHORS   Nishimoto-Morita,K., Shin,H.W., Mitsuhashi,H., Kitamura,M.,
            Zhang,Q., Johannes,L. and Nakayama,K.
  TITLE     Differential effects of depletion of ARL1 and ARFRP1 on membrane
            trafficking between the trans-Golgi network and endosomes
  JOURNAL   J Biol Chem 284 (16), 10583-10592 (2009)
   PUBMED   19224922
REFERENCE   6  (bases 1 to 964)
  AUTHORS   Miller,S.E., Collins,B.M., McCoy,A.J., Robinson,M.S. and Owen,D.J.
  TITLE     A SNARE-adaptor interaction is a new mode of cargo recognition in
            clathrin-coated vesicles
  JOURNAL   Nature 450 (7169), 570-574 (2007)
   PUBMED   18033301
REFERENCE   7  (bases 1 to 964)
  AUTHORS   Pryor,P.R., Mullock,B.M., Bright,N.A., Lindsay,M.R., Gray,S.R.,
            Richardson,S.C., Stewart,A., James,D.E., Piper,R.C. and Luzio,J.P.
  TITLE     Combinatorial SNARE complexes with VAMP7 or VAMP8 define different
            late endocytic fusion events
  JOURNAL   EMBO Rep 5 (6), 590-595 (2004)
   PUBMED   15133481
REFERENCE   8  (bases 1 to 964)
  AUTHORS   Nakajima,K., Takei,Y., Tanaka,Y., Nakagawa,T., Nakata,T., Noda,Y.,
            Setou,M. and Hirokawa,N.
  TITLE     Molecular motor KIF1C is not essential for mouse survival and
            motor-dependent retrograde Golgi apparatus-to-endoplasmic reticulum
            transport
  JOURNAL   Mol Cell Biol 22 (3), 866-873 (2002)
   PUBMED   11784862
REFERENCE   9  (bases 1 to 964)
  AUTHORS   Antonin,W., Holroyd,C., Fasshauer,D., Pabst,S., Von Mollard,G.F.
            and Jahn,R.
  TITLE     A SNARE complex mediating fusion of late endosomes defines
            conserved properties of SNARE structure and function
  JOURNAL   EMBO J 19 (23), 6453-6464 (2000)
   PUBMED   11101518
REFERENCE   10 (bases 1 to 964)
  AUTHORS   Antonin,W., Riedel,D. and von Mollard,G.F.
  TITLE     The SNARE Vti1a-beta is localized to small synaptic vesicles and
            participates in a novel SNARE complex
  JOURNAL   J Neurosci 20 (15), 5724-5732 (2000)
   PUBMED   10908612
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 17, 2019 this sequence version replaced XM_003750196.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM079542.1, FQ151429.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760475,
                                           SAMEA5760494 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-438               JAXUCZ010000006.1  103709050-103709487 c
            439-497             JAXUCZ010000006.1  103702925-103702983 c
            498-689             JAXUCZ010000006.1  103701755-103701946 c
            690-863             JAXUCZ010000006.1  103697159-103697332 c
            864-964             JAXUCZ010000006.1  103696135-103696235 c
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..964
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /note="vesicle transport through interaction with t-SNAREs
                     1B"
                     /db_xref="GeneID:100359512"
                     /db_xref="RGD:2323682"
     exon            1..438
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             324..929
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /note="Vesicle transport v-SNARE protein Vti1-like 1"
                     /codon_start=1
                     /product="vesicle transport through interaction with
                     t-SNAREs homolog 1B"
                     /protein_id="NP_001364123.1"
                     /db_xref="GeneID:100359512"
                     /db_xref="RGD:2323682"
                     /translation="MATSAASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKL
                     VRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREVRSTPLTA
                     TPGGRGDLKFGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIAAETDQIG
                     SEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRK"
     exon            439..497
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            498..689
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            690..863
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            864..964
                     /gene="Vti1b"
                     /gene_synonym="RGD1560475; Vti1-rp1; Vti1l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcccttgg gctcttcgct ttggtacctc ccctgtgccc actgcctgtc tccaggttgg
       61 agacagcagc tcgccttggc gccaggccgc gcccctatag tagccgggtg tcgtcctcgc
      121 ctggctttct gtcaggcttt ggcgctcgca cagtgacaac aggggggagg gcgtccggct
      181 cggaggaccc cggaaacgcc tgattccggg aggccgaggt gcggcagcgg tgatggcttt
      241 ggggccgggt agctgattcc tgaggtggga gtgggcccag cgcccggagt ctcagtggcc
      301 gcagctcacg agcaacctgc actatggcca cttccgccgc ctcctccgag catttcgaga
      361 agctgcacga gatcttccgc ggcctccttg aagatctaca aggggtgccg gagcggctgc
      421 tgggaaccgc ggggaccgag gagaagaaga agctggtcag agactttgat gaaaagcagc
      481 aggaagcaaa tgaaacgttg gcagagatgg aggaagaact acgatatgca cccctgactt
      541 ttcgtaactc catgatgtct aagcttcgaa actaccggaa ggaccttgct aaactccacc
      601 gtgaggtgag aagtacacct ttgacagcca cacctggagg ccgaggagac ctgaagtttg
      661 gcacatatac cttagagaat gagcatttga atcggctgca gtctcaaaga gcattacttc
      721 tgcaaggcac tgaaagcctg aaccgagcca cccaaagcat tgagcgttct catcggattg
      781 ccgcagaaac tgaccaaatt ggttcagaaa tcatagaaga gttgggggag caacgagacc
      841 agttggaacg taccaagagt agactggtaa acacaaatga aaacttaagc aaaagccgaa
      901 agattcttcg ctctatgtcc agaaagtaag tttcaagaaa cccacaaatt cttttttttt
      961 ttct
//
