LOCUS       XM_039090097             916 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vesicle transport through interaction
            with t-SNAREs 1A (Vti1a), transcript variant X11, mRNA.
ACCESSION   XM_039090097
VERSION     XM_039090097.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..916
                     /gene="Vti1a"
                     /gene_synonym="DD6A4-2(1); Vti1"
                     /note="vesicle transport through interaction with t-SNAREs
                     1A; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 3 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 216 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:65277"
                     /db_xref="RGD:621490"
     CDS             223..786
                     /gene="Vti1a"
                     /gene_synonym="DD6A4-2(1); Vti1"
                     /codon_start=1
                     /product="vesicle transport through interaction with
                     t-SNAREs homolog 1A isoform X10"
                     /protein_id="XP_038946025.1"
                     /db_xref="GeneID:65277"
                     /db_xref="RGD:621490"
                     /translation="MSADFEGYEQDFAVLTAEITSKISRVPRLPPDEKKQMVANVEKQ
                     LEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIAYSDEVRNE
                     LLGDAGNSSENQRAHLLDNTERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERI
                     QRARERLRETDANLGKSSRILTGMLRR"
ORIGIN      
        1 acgttcgagg attgagtgga aaagaaaagg cgcaggcagt gcagtttccg gaggacaggg
       61 actgtgtaga gcaaccagga agcggctggg ctgggagttg tcccgggttc ccgctgagct
      121 gttaaagact tcttccctgg gtccctgcgc cgaggccagg cgcccttcgt gagtcctgct
      181 ctgagataga acccggctcc ggccggccgt tccggagctg ccatgtcagc cgacttcgaa
      241 gggtacgagc aggacttcgc agtgctcact gctgagatca ccagcaagat ttccagggtc
      301 cctcgactcc ctcccgatga gaagaagcaa atggttgcca acgtggagaa acagctcgaa
      361 gaggccagag aactgctcga acagatggac ttggaagttc gagaaatccc accccaaagt
      421 cgaggaatgt acagcaacag aatgaggagc tacaagcaag aaatggggaa actggaaacg
      481 gattttaaaa ggtcacggat cgcctacagt gacgaagtac ggaatgagct cctaggggat
      541 gctgggaatt cctcagagaa ccagagggca catctgctgg ataacacgga aaggctggag
      601 aggtcatctc ggagactaga ggctggatac cagatagcag tggagaccga gcaaatcggc
      661 caagagatgt tggaaaacct gagtcatgac agagagagga tacagcgggc acgtgagcga
      721 ctccgggaaa cagatgcaaa cttggggaag agctctcgga ttctgactgg gatgttgcga
      781 aggtaagagc cagaatcatc caaaaccgca tcctgctcgt catcctgggg atcatcgtgg
      841 tcatcaccat cctgacggcc atcacttttt ttgtcagagg acactgaggc gtctgctctc
      901 ccttgataaa cagtga
//
