LOCUS       NM_001144870            1894 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus V-set and transmembrane domain containing 5
            (Vstm5), mRNA.
ACCESSION   NM_001144870 XM_001074484 XM_576358
VERSION     NM_001144870.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1894)
  AUTHORS   Lee,A.R., Ko,K.W., Lee,H., Yoon,Y.S., Song,M.R. and Park,C.S.
  TITLE     Putative Cell Adhesion Membrane Protein Vstm5 Regulates Neuronal
            Morphology and Migration in the Central Nervous System
  JOURNAL   J Neurosci 36 (39), 10181-10197 (2016)
   PUBMED   27683913
REFERENCE   2  (bases 1 to 1894)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DY310175.1 and BC088439.1.
            
            On or before Jan 28, 2009 this sequence version replaced
            XM_576358.2, XM_001074484.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088439.1, CK471186.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               DY310175.1         1-156
            157-1894            BC088439.1         1-1738
FEATURES             Location/Qualifiers
     source          1..1894
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q12"
     gene            1..1894
                     /gene="Vstm5"
                     /note="V-set and transmembrane domain containing 5"
                     /db_xref="GeneID:500947"
                     /db_xref="RGD:1563328"
     exon            1..261
                     /gene="Vstm5"
                     /inference="alignment:Splign:2.1.0"
     CDS             174..773
                     /gene="Vstm5"
                     /note="V-set and transmembrane domain-containing protein
                     5; hypothetical gene supported by BC088439"
                     /codon_start=1
                     /product="V-set and transmembrane domain-containing
                     protein 5 precursor"
                     /protein_id="NP_001138342.1"
                     /db_xref="GeneID:500947"
                     /db_xref="RGD:1563328"
                     /translation="MRPPRCVGRTQGIPLGLLAFWVATARCLQSQGVSLYIPRSAINA
                     TVQEDILLSVDYICHGVPTIEWEYTPNWGVQKIVEWKPGTPANVSQSHRDRVCTFDNG
                     SIQLFSVGVRDSGYYVITVTEHPGSSQSGTILLHVSEIRYEDLHFVAVFFALLAAVAV
                     VLISLMWVCNQCAYKFQRKRRYKLRESTTEEIEMKDVEC"
     exon            262..588
                     /gene="Vstm5"
                     /inference="alignment:Splign:2.1.0"
     exon            589..729
                     /gene="Vstm5"
                     /inference="alignment:Splign:2.1.0"
     exon            730..1860
                     /gene="Vstm5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctggcagag cgactgcggg agctgagacg tgctgagctg cgagcagagc agcagagcca
       61 aggcttggaa ggctaggctg gcgcgctgcg ctgcggggcg ctgctgaggg cgagcatcgg
      121 accggccgcc tccccgaggc ccatgcaggg gcgatacagc ccgctgctca ctcatgaggc
      181 ctccgcggtg cgtgggaagg acccaaggca tcccgctggg gctgctcgcg ttctgggtag
      241 ctaccgcccg ctgtctgcag agtcagggtg tgtcactgta cattccacgg tcggccatca
      301 atgccactgt ccaagaggac atcctgctgt cagtggacta catctgccac ggcgtgccca
      361 ctattgagtg ggagtacaca cctaactggg gtgtgcagaa gatcgtggag tggaaaccag
      421 ggaccccagc caatgtctcc caaagccaca gagacagagt ctgcaccttc gacaatggct
      481 ccatccagct tttcagtgtg ggtgtgagag attctggcta ctatgttatc accgtcacag
      541 agcacccggg gagcagccag tccggcacca tcttgctaca tgtgtctgag atccgctatg
      601 aggacctcca cttcgtcgct gtcttctttg ctctgcttgc tgctgtggct gtggtgctaa
      661 tcagcctcat gtgggtttgc aatcagtgtg cgtataaatt ccagaggaag aggaggtaca
      721 aactcagaga aagcaccact gaggagatcg agatgaagga tgttgagtgt tagccaagac
      781 tgtgccaatt acattgctac ctcaagagaa aaacagtatt tccagtcgaa gagaaaaaca
      841 gtatttccag tcgaaggaac aaaccgagcc agtccttgct gcagcttcta cacccctttc
      901 ctgacgagag agctggaaga tgagaaagct ggctgtgcat ctggaggtga cagcctatgt
      961 aagccagttc taggacttgc ctgtagttca aagaaatatc tgaggcttca accaggaact
     1021 ctctttggtt gcagcttcag gaccacgctg acccttaaca caggcaggca ccagctacca
     1081 cttacaatat ggactgcggc tccacattgc cctgctgagg gagttcctgt ctccaggcca
     1141 gcatgtctgc agaggggcta atgtgcagct agcactggag catgctcttg tctgatgtgc
     1201 aaactcctcc ccgcatctca catcccataa acatgagcaa gcctggagtt ccgagacagt
     1261 ctgatgatgc gagtgaactg tacctcgtgg ggagcagctg agtgcacgaa gaaaccagct
     1321 ttgggcacag agagcagaag gcattgatct catcctccct cagaacttgg gttgctatga
     1381 gaaaaacatg gcttcagttg accaggggta gctgaatggg cagtacaaca gtaaaatcca
     1441 taagcttcca gcttcgtcct gttcgatcac tggagacttt aaatctccag tcagatcctg
     1501 ggcagaggag catgtggtat tcacctacct catacggcat cagggactaa gaaaaacatg
     1561 tgaatccttg gaagatctgg aaagttagtt gagaaagtgc attattgtat agcaaaggtt
     1621 aaaatgccct gggacggggc tagagagaag gctcaacacc taagagccct tgctgttctt
     1681 gcagaggacc ctgattcctg caattccgtg cacccacatg gtagttcaca accttctgta
     1741 actccagttc cagggaatga gtctctcttc tggtcctcaa gggcactgca tgcacacagt
     1801 gcacacataa atgtgaaggc aaaacattca tacacgtgaa ataaaattta aaaaagtaaa
     1861 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
