LOCUS       NM_001108479            2045 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus V-set and transmembrane domain containing 2B
            (Vstm2b), mRNA.
ACCESSION   NM_001108479 XM_001080148 XM_341845
VERSION     NM_001108479.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108479.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.1758.1,
                                           SRR26360194.1828803.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840105
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                JAXUCZ010000001.1  101728708-101728774
            68-683              JAXUCZ010000001.1  101729185-101729800
            684-868             JAXUCZ010000001.1  101730358-101730542
            869-898             JAXUCZ010000001.1  101731674-101731703
            899-1373            JAXUCZ010000001.1  101732778-101733252
            1374-2045           JAXUCZ010000001.1  101756451-101757122
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..2045
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /note="V-set and transmembrane domain containing 2B"
                     /db_xref="GeneID:361560"
                     /db_xref="RGD:1306235"
     exon            1..67
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /inference="alignment:Splign:2.1.0"
     exon            68..683
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /inference="alignment:Splign:2.1.0"
     CDS             602..1462
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /note="V-set and transmembrane domain-containing protein
                     2B"
                     /codon_start=1
                     /product="V-set and transmembrane domain-containing
                     protein 2B precursor"
                     /protein_id="NP_001101949.1"
                     /db_xref="GeneID:361560"
                     /db_xref="RGD:1306235"
                     /translation="MEQRNRLGALGYLLPLLLHSLLLFVADATFTEVPKDVTVREGDD
                     IEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPGARSKVTNKDATKISTVR
                     VQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQEHKAQALLRVLSRFTPPNMQAA
                     EAVSHIQSSGPRRHGASSAVSSNNAGAALLTTSETSHDDKNPLPASPPSGSGVPEAAA
                     AAAASATHKATTMASAAAASSSASPPSGQAVLLRQRHGSGTGPGYSADPLLSLLLLAL
                     HKFLHPLLGH"
     exon            684..868
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /inference="alignment:Splign:2.1.0"
     exon            869..898
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /inference="alignment:Splign:2.1.0"
     exon            899..1373
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..2045
                     /gene="Vstm2b"
                     /gene_synonym="RGD1306235"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcccaccc acccgtcatg gcccgggtct ggaccaaaga gtgctgtggc tcgtggccca
       61 aacctgggtc ttcgcgccgc ggctgagcgc ccactcgcct tgcggagtga gcggcggaga
      121 aaccggtggg ggcggcggcg ggagagctcc gcgggagtcg gaggaggtgg cagtcgggag
      181 cccagccaga aggagaccag gaggcagact ctggtgcctc tcaggcgctc acttccttct
      241 ccaaggatgg atagtggcac agtccggccg ttgcccggcc cgcgggccag agactgaact
      301 gcagatcccc attctcctgt ggaccaccgg actgaaggag gtaccgaccg aaggatcctt
      361 ctggagggac caggtctcct gcgtcccccg cgtagcgccc cccgccggag ccgcgcccgg
      421 ccagccggca aggaagccgg gctgattggc ggccgccggc ggccaaggga gggggcgccg
      481 tgcggggcca tggcaggctc cgaggcgtcc tagccggagc tcgagccgga gccaagccca
      541 agctgctgcc gccgccgcct ctccgcgccg ggcccccgcc gccgccgcaa ccctgcggga
      601 gatggaacag cggaaccggc tcggcgccct cggatacctg ctacctctgc tactgcacag
      661 cctgctgctc ttcgtcgccg acgccacatt cacggaagtc cccaaagatg taaccgtgcg
      721 ggaaggtgac gatatcgaaa tgccctgcgc gttcagggca agcggagcca cctcgtactc
      781 actggagatt cagtggtggt acctcaagga gccaccccgg gagctgttac acgagctggc
      841 gctcagcgtg ccgggcgccc ggagcaaggt aacaaataag gatgcaacta aaatcagcac
      901 cgtgcgtgtc cagggcaatg acatctcaca ccggcttcgg ctgtccgccg tacgattgca
      961 ggacgaaggt gtttatgagt gtcgcgtttc ggactacagc gacgatgaca ctcaggagca
     1021 caaggcccag gcattgctgc gtgtgctatc gcgcttcacg ccgcccaaca tgcaagctgc
     1081 agaggcagtg tcccacattc agagcagcgg cccgcgtcgc cacggagcct ccagtgctgt
     1141 cagctctaac aacgcaggcg ctgctctcct caccacctct gaaaccagcc acgacgacaa
     1201 gaacccactt cctgcgagtc ctccctctgg atcaggagtt cccgaggccg ccgccgccgc
     1261 tgccgcctcc gcgacccaca aagccaccac aatggcttct gcagctgctg cttcctcatc
     1321 agcgtccccg ccatccgggc aggctgtcct tctgcgccag aggcacggct caggtaccgg
     1381 cccaggctac agtgcagacc ctctgctgtc tctgctcttg ttagcactac ataagttcct
     1441 gcaccctctt ctggggcact gacagccgta gcacctcagc aggcaacctg ggaggacacc
     1501 ttgccacatg gacacaggga ctaagggaag catgaagaag tccatgcaaa actaaataaa
     1561 tcatattttt ggggaagtaa cacagatcta gaagacttaa aattatgcat caagtttcca
     1621 aataggatgg ggtgcaggcc gtgcggtgtg catggggcgc caagttcttc acggcaatgt
     1681 atttttcttt cctccacatt ccctccgaat cttcattttg cacgaactgt taagcaggca
     1741 ctgaggatag tatgtaaaaa atgttgggtc aaagcctttc tgacaaagta aaatattttt
     1801 aggagactat tgtgtttaga aaaaaaattt tttttgaatt tacattttct ttgggggatt
     1861 tttccttttt tattaaatta tttctttgga gacactttga ttaaaaagaa acatcatagt
     1921 tcaaattcac tgtcaataat atttattttt aaataaaaat tggaaacaag gatatacagt
     1981 tgtttataaa ctgtattgta tattgctgaa taatagttgg attaaaagag aaaacttttc
     2041 aatag
//
