LOCUS       XM_039092861            5983 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus V-set and transmembrane domain
            containing 2A (Vstm2a), transcript variant X1, mRNA.
ACCESSION   XM_039092861
VERSION     XM_039092861.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092861.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5983
                     /gene="Vstm2a"
                     /note="V-set and transmembrane domain containing 2A;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 21 ESTs, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 45 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:689106"
                     /db_xref="RGD:1596197"
     CDS             266..1024
                     /gene="Vstm2a"
                     /codon_start=1
                     /product="V-set and transmembrane domain-containing
                     protein 2A isoform X1"
                     /protein_id="XP_038948789.1"
                     /db_xref="GeneID:689106"
                     /db_xref="RGD:1596197"
                     /translation="MMGIFLASVGFMFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNV
                     EMSCAFQSGSASVYLEIQWWFLRGPEDLEQGTEAAGSQVELLPDRDPDNDGTKISTVK
                     VQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAF
                     EASPMWLQDTKPRKNASSVVPSSVHSSANQRMHSTSSPQAVAKIPKQSPQSAKSKSPV
                     KSTERTAKLTLNSKHHSAPLYSSYLHKEHQLPEA"
ORIGIN      
        1 ctgccaggta gcggaagcag ccagccgccg gaggagacac ttcacggcgt ggcagccctg
       61 gtctgcgcct gaagcctccg gatcgcagcc agctcggtcc aaccctcgcc agtcgcaatc
      121 ccctgtgccc aagccactct ttgctgcgag tggcagcatg catgcagtat cgcgccctgg
      181 gctctgagag cagcccgcgg aacgcttgcc tgcctgtcta ggttttgggg ctctgggcta
      241 cacggatgtg ccctattccc ttggcatgat ggggatcttt ttggcgtctg ttggatttat
      301 gttcttttcc gtgttatatg tacaacaagg gctttcttct caagcaaaat ttaccgagtt
      361 tcctcgaaac gtgactgcga ccgaagggca aaatgtggag atgtcctgcg ctttccaaag
      421 cggctctgct tcggtgtacc tggagatcca gtggtggttc cttcggggac cagaggacct
      481 ggagcaaggg acagaggcgg caggctcgca ggtggagctc ttacccgaca gagacccgga
      541 caacgacggg accaagatta gtacagtgaa agtccaaggc aatgacatct cccacaagct
      601 tcagatttcc aaagtgagaa aaaaggacga aggtttatat gagtgcaggg tgactgatgc
      661 taactacggg gagcttcagg aacacaaggc ccaggcctac ctgaaagtca atgccaacag
      721 ccatgctcgg cggatgcagg cctttgaagc ctcgcctatg tggctacaag atacgaagcc
      781 tcgaaagaat gcatcctcag tggttcccag cagcgtccac agctctgcca accaacgaat
      841 gcactccacc tccagccctc aagcggtagc caaaatcccc aagcaaagtc cacaatcagc
      901 aaagagcaaa tcgcctgtaa aatctacgga gcggacagca aagttgaccc taaactccaa
      961 gcaccattct gcacccctgt actctagtta tctacacaag gagcatcagc ttccggaagc
     1021 ataagtgaag acattatcac acgctttatt gataataatt ttctttggga aagtggctca
     1081 tcttttgttt caagagaatt gatgtgaagt gataggacat tttctaattg cgagatcgat
     1141 ttttttttct cttttatttc aacaaataaa acctgaattt cactgactgc tcaggagttg
     1201 gcctggacga catgagtatc ccaaatatct ccatggattc caccaatttc ctaccaaggg
     1261 acacataatc tgcaagaaac aaagatggaa atcctgagaa acgaaaactg ctttcaaaca
     1321 gcaccccagc tgggaacaaa acaaaaagca aaagactgaa cacgtcaaat caacagcaga
     1381 caacttgatt ttatacatgg aataatcaaa gaaagtcctc tctcacttcc tctttgcccc
     1441 gtggaatttt tcttggagtt tcccttctcc ttgtttgccg ttttttgttc aatggtagca
     1501 agtgccaatt acggccaatc cctgtcaatc ctgggaggtt tatattcgta catagtgtgg
     1561 tatatttcaa tgtattttaa ttcattttgc aatttctgta tatgcaaacc tggcaaattc
     1621 tgtaaattgc ttatagtacg tgtgatgtga cttcaaggta gataggctat gatgctcatg
     1681 caagctgact ttcttcatcc tatatacaaa tatatacatg agcatatatt aggctaccaa
     1741 cttcttttcc caaagccttt gttttttcat ttgtaactca tgtattgtgt gaattttgta
     1801 gcgtatttct ctgtcccact gatttgacag ctacagtttg tctccgttgt ccttccttct
     1861 ggaaatattt aaaattgtgt atgtctctga taaatgagtt aatttttgct ctgtgtatgc
     1921 tatgttggaa tttgctgtgt tcttttacac atgtatttat taaggtctag ggatcttgag
     1981 tctgaggaat gcacacctag tttttgacag atcccctcgt gttatcaata ttctatctca
     2041 gagaaaaaga aaggccaagt gtgagagcta agaagacatt ttgactcccc aagatcctgg
     2101 aagagcactt cacgctctga ctaaataatg ctgcttcctt tgttcttcaa gacttttttt
     2161 catagctttg tcattctgtt atttgctgct aattatattt taatgtctac taattaaaaa
     2221 ttaaaatgtg attgttggct gaatacaata tgcaaatgac tgcaaagccc atactgaaga
     2281 agataggtgt ttaatcttca ctcaataatt ataattttaa atattccatc gttatttttt
     2341 gactttatga tattttgttt aggcctgttc taattacatc tttctctggc aaagaaagat
     2401 agaacaatca atgaattccc tcttagtatg gaagggttgt ggcttaagaa agaacacatc
     2461 cagatagtct tccagagata ataatttatt ttcattataa aaccagaaac catatatgta
     2521 ggaatggtcc actcccaatg taaggcccta aattgtagct tgaaggaaat gaatttattt
     2581 gcttttttat ggtaaacgac tggactctgc catgcactta taagcaatgt gaatattttc
     2641 ataaagttct tgacattctc ctttaagaaa tattgtttta tgctaaatct ttccttgcca
     2701 tttttcttgt ttcatttgat tcattgtttc attctaataa agaaaataaa ggtttaatta
     2761 tactttatta acatacaaat gtattttcat tctaaagata tttagatatt tctaaatatc
     2821 tgaaagttgt ataaaatgat gatggataaa tattatctgt tcagtctctt taagctttaa
     2881 aaatcccata cattacagta tatattagta tactgattta aagtcaatca aactgggaaa
     2941 acacatcttg tattatactt ttactcaatg tccaggtaat ggtatcagct aattttacag
     3001 caagtcaaac ttgtaccctt atcataaatg ttcaccatgc ttgtaataaa aggacatatg
     3061 ctagtttggg aagaatgctc actagattca ttgtatcagt gtccaaaata ataaagacct
     3121 gtttatcact gtgtgaccaa agtccaccct accctccact ttgttaaaag aatatagcaa
     3181 actatctgtt tgctccaaac tccaaaagag tatggaactt taaatatcag agcagaaaat
     3241 acagcagatc aatgagatat tctaaacatt tgtatactat actctattcc tttgggaata
     3301 taactttgtg tgtatccatg agtatggaaa agaatagaaa atacaaacaa aaagtatctg
     3361 gcttttgcaa ccttgtttcc aagtttatat agtatctttt ataagagaga cttataaaaa
     3421 gctggaattg ctttctttgt ttcttaaaga cttgtagaca gtttaaaaga caaaggaggc
     3481 aaataaaaat gctcctgaac aaagtaaggt ggtagaattc ttgaaaatag aagctatgat
     3541 ttgttagact tcatgaagtc taggaaactg tcctgtttgc agtcagccct acatgtcctt
     3601 aaccagcaaa cacattgtaa caactgccca tgtggtgttt gtgctatatt aaatcactgg
     3661 agataattta aagtaaggat gctgtgaata tcatattcta atactaggtc gttttatcta
     3721 agagacttga gcacccacac agtttgaaag ccaatgactg gcttatacag tcatgtatct
     3781 acagatgcta gggtaagagc tatacatgta tattccaatg ttccttttgt agagaggatc
     3841 cttggcaggc acaattatga gaactaattt aattaggctc tcccctgata aagaaatata
     3901 tataaatgat tttgagaatc taagaagttc ttattactat ttggttcaag ttctttaact
     3961 taaaagttct cagaagcaag atgtattcag ataactatat tagtacccac acacatattc
     4021 ggcaaataaa acatattttt aggcctagaa aaaaaaggta aatttattat acgtgggata
     4081 atagagtaat aatagagtaa tatttgttga ctttttacag cagatgctaa tttttaaaaa
     4141 ggcatggtgc acatccccat aatcacagta ctcagaagac tggaacaaga aattcatgag
     4201 tgcaagttca acctgtccac atgttaaaca atgactcttt aaaaaaaaaa gaaaatgtgc
     4261 tagataatta ataaaatgtg ttaatttttg caaagagcac acagatatta tttctgtatc
     4321 catcctacct agaaaacaag atattgagtg tactgtcaac ttgtataaag aatattcaca
     4381 aaaggtaaat gcaatctttc ttggagtaat gcacgtactg atgattgtat tgtagaatta
     4441 agactatgaa gctaaaacat catgagtcca ctaagtttca agtatttata ccaaaagaat
     4501 ttatttttag aactgttcat tagcaaaggg agcactctgc ctgccattca agaaatgtaa
     4561 aaagtggagc acgtcagcca tgaagtacat aaggttcttc cctgtacaca gtgagagaca
     4621 acaggaagta ttcaaaagca ataaaatatt tgatgccaat aaatttgatg aaaaccaaat
     4681 aggaggatat aaggagagta actgggaggt cagaggcggt tgccctggag atgcaggcat
     4741 gccattctac ctggtagaaa gcacagtatt taaaggggaa ccagcaatgc caatctcctg
     4801 gagaaaaggt caggtagagt tgtctaacac ctaggctgtg aacaagggca tacaagaaag
     4861 gggaggaaca tgagagagag cacgtgacag gactagaaaa gggctcttca gcgggtactg
     4921 agaccaggca taaagcaatg ctggagtttg caaagacctg ttagaattct gattctttcc
     4981 ccaggagaca ggctttttgt gccatcctga aacttggttg cagtttattc tttgagcaac
     5041 cctctggtta caacactgca gtttgcaaac tagttggtgt gtgtatttgt gtgtgtgtgg
     5101 gtggatgggt gggtgtgggt gtggtgtggt gtgtttgtgt atgtgtgagc atgtgcatct
     5161 ttgtgtgtct ttgtgtgtgt gtatgtttct gtatgtgtgt gttgtatgtg tgtttttgtg
     5221 agtgtgtgtg agagatgtat aggtgtgtgt gttagatgta taggtgtgtg tgttgtgtgt
     5281 tcatgcatgc atgttgagga cagcggagga tgtcaggtgt cctgctctct ccttctccat
     5341 cttatcccct tgaaccaggc tagaagacaa cagatccaag aatcccccat ctcctatgtt
     5401 tgcttgattc tcagccttgc ctacactgtg tagtacatga ttttacccac tgaatcatct
     5461 ccctagaccc aaaccactca tacttttata ctgatcctgt ggggatgcag aagatgtggg
     5521 acattaacag gttttaatgc tgatatacag ttgaaactct tcaggggcaa aacaggagat
     5581 tgaaagacat ttgggactgt ttgaaatgtg gtaatgaact agttactata actgcatatg
     5641 tgatttaaaa taaaaacacg ggtccattgg ttccctttgt agttcaagtt acctgctgtt
     5701 aaacattgct tgaaaatagt aaatggaaaa ctcaagtgta tgttatgctc agtagtgtaa
     5761 taaaatgcac atcaccctgt gaatcaatct tttattaaag aaatacatgc tatatcccca
     5821 ttatgcactt aatgcctatc ttagttagca ggtacattgt aatggtattc tgggtcttat
     5881 cttcaactaa gtattgtcac aagagaagtg atggtagcaa ttcagctata acaaagagaa
     5941 gctgtaaaat gcttccttta agtaaatggc tgaatgttcg gaa
//
