LOCUS       XM_002728681            4612 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus V-set and transmembrane domain
            containing 1 (Vstm1), transcript variant X1, mRNA.
ACCESSION   XM_002728681
VERSION     XM_002728681.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002728681.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002728681.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4612
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4612
                     /gene="Vstm1"
                     /note="V-set and transmembrane domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 49 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100360054"
                     /db_xref="RGD:2322891"
     CDS             241..870
                     /gene="Vstm1"
                     /codon_start=1
                     /product="V-set and transmembrane domain-containing
                     protein 1 isoform X1"
                     /protein_id="XP_002728727.3"
                     /db_xref="GeneID:100360054"
                     /db_xref="RGD:2322891"
                     /translation="MDIDFIYLLCLGLCLCYGDEDENEELPRPSISAWPSSVVKCRSN
                     VTLRCGTHFQNVTVTLGRLHNSQYQQQKKSPGKEAEFHLTNLQPEDAGGYFCTYRTAA
                     SHTWSGQSQHLQLVVTDGLGGGGCPRPSDSKLIFLTTFSCLCISLLFVCIFFIYRCTQ
                     QGSSHEEPPKRQEKEEEEEEDGEEEEEKEVIVTLNDHTCKHEHETSCGE"
ORIGIN      
        1 acagggctgc cctcggcctg agggagaaga tgttatcgtc cacagtttct tgcgtcctgg
       61 gtcagttcag gaaggaaatt gtgcaaacag ctatgcaggc aagctaaatg tcagggcaaa
      121 gcttcagcct gcaagctcca gggacaaagt ggggccagga gagaactgtg atagccttct
      181 gccctgcttc ttcttcccaa gagcagaaga ctggatcttg acttggggat aagggaagct
      241 atggacatag atttcatata cctgctttgc ctggggctgt gcctgtgtta tggagatgag
      301 gacgagaacg aggaacttcc caggccttcc atcagtgcct ggcccagctc tgtggtcaag
      361 tgcaggagta acgtcactct ccgatgcggg actcatttcc agaatgttac agtcactctg
      421 gggaggttgc acaactctca gtaccagcaa cagaagaagt caccgggaaa ggaagctgag
      481 ttccacctca ctaacctgca gcctgaagac gccgggggct atttctgtac ttacagaaca
      541 gcagcctccc acacgtggtc aggacagagt cagcacttac agttggtggt cacagatgga
      601 ctgggaggag gtggatgccc cagaccatca gacagcaaac tcatcttcct gaccaccttc
      661 agctgcctct gcatctctct tctctttgtc tgcatcttct ttatctacag atgcactcag
      721 caaggttcat cacatgaaga gccccccaag aggcaggaga aggaggaaga ggaggaggag
      781 gacggagagg aggaggagga gaaagaagtt atagtgacac tgaatgatca cacgtgtaag
      841 cacgaacatg aaaccagctg tggtgagtga catctggaat ccaacactca ggctgaagca
      901 gaagactgaa tttgaatttg aggtcaacct gaactgcata aagagagcat atccaacaca
      961 cacacacaca cacacaccac aaacacacac acacacagat atacacagag acacagacac
     1021 atagacagag tcacgggtat acacacacag aaacatacac ctacacagag aaacagagac
     1081 acacatacat aatatacata gatacataca taccgagata caagctgaca tatagagaca
     1141 cagatacata cacagacata tacagaaaca cacacataca cttacacata attgatatac
     1201 gcacacagag acgcatacac agagacactg atacacacac acacacagag agaaagagag
     1261 agagacatag agatgctgat acacccagac agacacatag agacacatgt acatacacac
     1321 aatctttgct cccaaagttc tgtcgctctc gggtttgcaa ggcattgttt gaatatagga
     1381 aggcatgaaa gtgtgaacat ttggatcatc tatataaata tccttagctc atgatcagat
     1441 ttgggataat tttctctttg tatgattttt ggtgtttggg tttttttttt ttttatcttt
     1501 gttgcctttt cctttcttga gatagggtgt cactatgtag ccccagctgg cctggagttg
     1561 atcgagtaga ctaggctggc cttgaactct cagagatcta cctgccaact actatgattt
     1621 ttttaaaaag gcatgtacta ttttgcttga ccctatttta attctttaat ttcaaaataa
     1681 ttcaatcata atgaaaaagt aaataataaa aattgaaata catagcctga cattgtctaa
     1741 acagtgatat tttgcttcct cctcttcctc ttcctcctct tcctcctcct cctccttctt
     1801 tcctccttct tcttcccctt ctcttcctcc ttcttctact ctttttagtt ttaaaatttt
     1861 ttcttttttt gcagtattga gatttgaact cagggcttca catgttaggc aagcactctc
     1921 ccactgaaat atatcccccc tccacatcta cccttaattt attttccttc tcctcactct
     1981 cccaggcacc cataggcaaa cactgtgtaa ggcagtctat acctctccca tatttgtttg
     2041 ttttcttttt ctgtttgaga cagagtctca agcagcccag gctactctaa aaccagcctg
     2101 aagatagcct tgaacttctg atcttcctgc ctccgtctcc caagtgctag tactataggc
     2161 ctggcttcat tcctgtgtat ttttccatac ttttattaag taggcataat tttattaaat
     2221 agtcaatgta tggtaatatt tatgctatta aatacatgca taaatacata caaagtcact
     2281 ttttttaacc tttgcagtat ttggtacatt cgaaacttta aggcgctttt aaatttatta
     2341 ttattactct tatttcatgt gtgtgagtgg gtacatacct gtggaggtca gaggataact
     2401 tgtagaagtt ggtgctctct ccttccaccg tgtgggttcc aaggatcaaa acttagtaat
     2461 caggcttgtc tgcaagcact tttatccact gagccatttc ctggctccat ctgaaatgat
     2521 tttgctgttg ttgttttcaa gataaagttt gctctgtgta agtctgacta ttgtagaatt
     2581 ctctctgtaa accaggctgc cttcaaactc agagatcccc ctgcctctac ctcccgagtg
     2641 ctgggattaa agtggtagcc accaggtcag ccttggtatt gctttaatct aagctgtaga
     2701 ttcgagtttg ggtctgagta ggagttctga tgtttctata tgttaactta tattttaggt
     2761 gtaccctcct tgacaattag cttagtttag ccttttggat agaagtgaca aaaggaaaca
     2821 tcaaagtaaa aaaccttgaa ggaaggaagg aaggaaaaaa ggaaggaagg taggttatgt
     2881 aagcaaactg aagtaaaaac tgagctgtag aaacatcctc agatgcctac atccacataa
     2941 tgaaaaccat ttcagcttcc cttcctttgc ctctcatctc catttctatt tttgtgttat
     3001 tattattcag accagctgtt cctgtgagtc tatgactgat aatgacaatt ccaggcttac
     3061 agactcacag acttttagcc aaggagaaag gggaggggtt gggggatctt atttcctgga
     3121 tctgttaggg gaaaaaaaat tattgactcc cttcagaaga ggctagaaaa ctaactcatt
     3181 gaagtgttga atatgggagt ttaaaaaaaa atcaaacatt gagattcagc tggtagagtg
     3241 cttgcctagc atacccaagc cttggattcc atctccaata ccacatacac tgaatgtggt
     3301 tgtgcaaagc tgtcatctca gcactcagga catggggaaa gggggatccg caagttcagg
     3361 gtcatctctg gtttcttact gagttccaag ccaacatggg gcacatggca ttgcactgca
     3421 aaaggagaga ggctggagat gtagctctgc agttaagagt gcagagaact tggactccca
     3481 gcacttacat tggtagggtc cggttccagg tgctaggatg ccctcttccg gtctctttgg
     3541 acaacttaac tgatgggcac acacaaacac acctgcatac acagaacaat actttttaaa
     3601 taaagcataa aaccaatcat ttattgcctg ctttattttt tagcttataa ccagtgctaa
     3661 acaatagtta taagaaaaac tgttatctga ttacattaca ttaatgaatt cttaagaaca
     3721 tagtccacgg gctggagaga tggctcagtg gttaagagcc cccgactgct cttccagagg
     3781 tcatgagttc aattcccagc aaccacatgg tggctcacaa ccatctgtaa agagatccga
     3841 tgccctcttc tggtgtgtct gaagacagct acagtgtact tacatataat aaataaataa
     3901 atctttaaaa aaaaattaaa aaaaaaattt taaagaacat agtccaaatc ctacctctga
     3961 ctagagcaag cccacatcat caagaataat aacagatgcc ctgtttcagt gtctaccttt
     4021 ccgaaacatc aacgtgggat ttgaggcttg ggaagatcca gaggaaaagt ggaaggaata
     4081 tgaggtagtc atcattctca ctttcacagt gatgaatgaa agacccaaaa gttttcataa
     4141 tcaaaaatat ttctatgtcc acagggcagt ggtggcacac tcctttaatc ccaacactct
     4201 ggaggcagag gcaggcagat ctctgagttc aaggcagctt ggtctacaga gtgagttcca
     4261 gaacagccaa ggctacacag agaaaccctg tcttcaaaaa aaaaaattat ctttccaaaa
     4321 tcatgaagac tctgatctaa atcccagctt tgtgaagtcc tagagcctta gaagacagac
     4381 gtttttctga aaaggagcaa gcaagagtaa tttcagcttt gtggctataa tatttcagca
     4441 tccataacgg atataaaaac aagcacgggt gactatattc aaataaagct ttatatacca
     4501 aaaggagtag agagccatag tttgccagct ctcattctag gcaaatgcac tgtgtgagtc
     4561 tgaaaggatt accagaatta gagagacaga atgatgtgtc ctaggatatc aa
//
