LOCUS       NM_001271336            3129 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus V-set and immunoglobulin domain containing 10
            (Vsig10), mRNA.
ACCESSION   NM_001271336 XM_001080115 XM_222215
VERSION     NM_001271336.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3129)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On or before Sep 16, 2012 this sequence version replaced
            XM_222215.6, XM_001080115.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760386
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                JAXUCZ010000012.1  44935982-44936042   c
            62-72               JAXUCZ010000012.1  44934109-44934119   c
            73-138              JAXUCZ010000012.1  44931976-44932041   c
            139-439             JAXUCZ010000012.1  44930266-44930566   c
            440-742             JAXUCZ010000012.1  44921209-44921511   c
            743-997             JAXUCZ010000012.1  44916932-44917186   c
            998-1291            JAXUCZ010000012.1  44911370-44911663   c
            1292-1402           JAXUCZ010000012.1  44908519-44908629   c
            1403-1418           JAXUCZ010000012.1  44907665-44907680   c
            1419-1639           JAXUCZ010000012.1  44905414-44905634   c
            1640-3129           JAXUCZ010000012.1  44902948-44904437   c
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..3129
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /note="V-set and immunoglobulin domain containing 10"
                     /db_xref="GeneID:304529"
                     /db_xref="RGD:1565800"
     CDS             1..1695
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /note="V-set and immunoglobulin domain-containing protein
                     10"
                     /codon_start=1
                     /product="V-set and immunoglobulin domain-containing
                     protein 10 precursor"
                     /protein_id="NP_001258265.1"
                     /db_xref="GeneID:304529"
                     /db_xref="RGD:1565800"
                     /translation="MAGLRVLLCLGALLARQGSAGVKLVPEPSPCLLVYQSNSPVLPG
                     IHPDLPFTDSEAVAIGEVHENVTLRCGSLSGSRGLVTWYRNDSEPAFLVSSNSSLPPA
                     APRFSLEDAGALRIEALRLEDDGNYTCREVLNETHWFPVQLRVTSGPAHIDVNISATG
                     TLPNGTLYAARGSQVDFSCCSAAQPPPEVEWWIQTHSSVSESLGKNLSANSFTLMLMS
                     KNLQGNYTCSATNVLSRRQRKVTTELLVYWPPPSAPQCSAGLSPESANLELTCNWDGG
                     YPDPTFLWTEEPGGVVVGNSKLQTLSPSQLSEGKKFKCVGSHILGPESGASCVVQISS
                     PLLASRPMKTCLVGGDVTLTCQVEGANPPARIQWLRNLTQPETAIQPSSRYVITQQGQ
                     SSSLTIHNCSQDQDGGFYFCRAENPVGVRAADIWLSVKEPLNVGGIVGTVVSLLLLGL
                     AIVSGLMLYYSPAFCWKAGSTLRGQDMGDVMVLVDSEEEEEEEENKGALAEVVGQETR
                     ETEEELPKEIGKHGHIHRVTALVNGNLDRMGNGLQEFQDDSDGQQSDIVEEEDKPV"
     exon            1..61
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            62..72
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            73..138
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            139..439
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            440..742
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            743..997
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1291
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            1292..1402
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            1403..1418
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1639
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
     exon            1640..3129
                     /gene="Vsig10"
                     /gene_synonym="RGD1565800"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggccggat tgcgcgtcct gctgtgcctc ggggcgctgc tggcccgcca gggctccgca
       61 ggtgtcaagc tggttcctga acccagcccg tgcctacttg tgtatcagtc caactctcca
      121 gtcttgcctg gcatccaccc tgaccttccc tttacagact cagaggctgt ggctatcggc
      181 gaagtccatg aaaatgttac tctacgctgt ggcagcttgt caggatccag aggcctggtg
      241 acctggtacc ggaatgactc cgagcccgcc ttcctggtct cctccaattc cagcctccct
      301 ccggctgcac cccgtttctc tctagaggat gcaggtgccc tgcgcattga ggctctgaga
      361 ctggaggatg acggcaacta cacctgccga gaggttctaa acgagaccca ctggttccct
      421 gtgcagcttc gggtgaccag tggccctgcc cacattgacg ttaacatctc agccactggc
      481 accctcccca atggcaccct gtacgcagcc aggggctctc aggtggactt cagctgctgc
      541 agcgctgcac agcctccgcc cgaggtggag tggtggatcc agacccacag cagcgtctcc
      601 gagtccttgg gaaagaacct gtcggccaac agcttcactc tgatgctgat gtccaagaac
      661 ctccaaggca actacacttg ctcagccacc aacgtgctca gcaggagaca gcgaaaggtg
      721 accaccgagc tcctggtcta ctggccccct ccgtcagctc ctcagtgctc ggcggggttg
      781 tctccagaat cagctaacct ggaactcacc tgtaactggg atgggggata ccctgacccg
      841 accttcctgt ggactgagga gcctggagga gtggtcgtgg ggaattcaaa gctgcaaacc
      901 ctgagcccgt cgcagctgtc ggagggcaag aagtttaaat gcgttgggag ccacatactg
      961 ggaccagagt ctggagccag ctgcgtggta cagatctcaa gccccttact tgcatctcgg
     1021 cccatgaaaa cttgcttggt ggggggcgat gtgacgctca cctgccaagt ggagggagcc
     1081 aacccacctg caaggatcca gtggctgagg aacctcacgc agccggagac agccatccag
     1141 cccagcagcc gctatgtcat tacccagcag ggccagagct cctctctcac catccacaac
     1201 tgctcccagg accaggatgg aggcttttac ttctgccggg ccgagaaccc tgttggggtg
     1261 agggctgcag atatctggct gagtgttaaa gaacctctga acgtcggggg catcgtgggc
     1321 actgtggtga gcctcctcct gctgggtctg gccatcgttt cgggcctcat gctctattac
     1381 agccctgctt tctgctggaa ggcagggagc acgctcaggg gacaggacat gggtgacgtc
     1441 atggttttgg tggattcgga agaggaggag gaagaggagg agaacaaggg agctcttgct
     1501 gaagtggtgg ggcaggagac gagggagaca gaggaggagt tgccgaaaga gataggcaag
     1561 catggacaca ttcacagggt gactgctctg gtcaacggga acttagaccg catggggaac
     1621 ggactgcaag agtttcagga tgacagtgac ggacagcaaa gcgacattgt tgaagaggaa
     1681 gacaaaccag tctgatgaaa aggatgctcc actgtcagtg ttgtcttgca agttcggtct
     1741 gttttggctg ccccctcacc gtgctgccca gaggagcttg ctagggactg ctggggtctc
     1801 tgcagcagac acatctctcc ttcccttatc tcccactgct ttcatttggt gtgggtcacc
     1861 tcagcgttgt gaagtgcact gggaaggagc agcccgtgtg gggcgaagct gcagtggtgt
     1921 ctgaggggac agttggccgt gacacctggc tctacgcagg tcatttactg tgacacactg
     1981 attgggggct ggggaggggt ggggggcttg gtacctgtgc actgtgccac tactcaaggt
     2041 ttgtagcctg cttacccaac acgaatatgg aagcggggct ttttagtcac cgttgaggtg
     2101 aggaaccagg caccttctgg gcagacagga ggtggcagct accagaagac agttgcattg
     2161 ggcctgggag tcagactgag gcttgaattc ttgttttgca tcacctgtga agaagtacca
     2221 gctttccaag ctcctgagag atggagaagg tagttcaggg aggggttcca aagagctact
     2281 gcaggagcct tctttgtaga ctctcagtcc ccccccaccc caactatgct ttttccccta
     2341 gagaggtgca cctttcctta tagccttcat ggagtacaga gcagagccgc gtgtagttat
     2401 agaagcctac tacacgatgg gcctaaggct tctcttcatg tgtcctgtgc tataagcaag
     2461 agaaacattt cctaacagca tcactgggta tgaactggac agatggtcca ctcggcctca
     2521 ttgtctgtgt gttggaaatg ggagtatgtt tccatcctac ttactaggac atgtttcaaa
     2581 agaaagtagt gggtgatgac gtcagcttga gatgcctagg ttctggggat ttttttatta
     2641 ttttttttaa aatttcatct aaacgttctg aagtcaggga tcttctaagg gtgcaataag
     2701 tctgtgctaa ccatgaaaat ctgacttgaa atttgcattt tatattttgt gcacatcccg
     2761 ctcaaacagg acatgatcta aggctttatg gacctcctaa cgctggggcc caagattcct
     2821 gaggagtctg gttaacagaa gtacctgcac ggtggggagg ggctctctgt tctctctgag
     2881 tgcagggact gcagtgaaga aaccactcct ggcgtggccc atccattgga gcccttggga
     2941 atagctgtga agtgcagttc tcttgctttg tggtgcctca agcactggat ccatcactct
     3001 ggatcttttc atttcacagc gggctactca ggttgccatc agtcctggga gctggccttt
     3061 cctttgaggc cccatgatag agtttctgag tttgtctgtg gctcagaggc aactttaaaa
     3121 gagaagtca
//
