LOCUS       XM_039088954            4644 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS8 subunit of CORVET complex (Vps8),
            transcript variant X6, mRNA.
ACCESSION   XM_039088954
VERSION     XM_039088954.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4644
                     /gene="Vps8"
                     /note="VPS8 subunit of CORVET complex; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 35 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     48 samples with support for all annotated introns"
                     /db_xref="GeneID:287990"
                     /db_xref="RGD:1309443"
     CDS             1..4293
                     /gene="Vps8"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 8
                     homolog isoform X1"
                     /protein_id="XP_038944882.1"
                     /db_xref="GeneID:287990"
                     /db_xref="RGD:1309443"
                     /translation="MENEPGQENLEQNPCARTVEEELNKSFNLEASLSKFSCIDLDKE
                     LEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEEESFVLEDPTLLNVDTIDSHSYDT
                     SSVASSDSGDRANLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAI
                     AVSSLIAVGTSHGLALIFGKDQNQALRLCLGSTSVGEQYGAISALSINNDCSRLLCGF
                     AKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRV
                     MGVRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPS
                     LKVWMTFPYGRMDPSSVPLLAWHFVAVSNCVNPMLAFCRGDTVHFLLVKRDESGAIHV
                     TKQKHLHLYYDLINFTWINSRTVVLLDSVEKLHVIDRQTQEELETMEISEVQLVYNSS
                     HFKSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRERMDHLL
                     KQDCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAVVADRMVEILFHYADRALKKCPD
                     QGKIQVMEQHFQDTVPVIVDYCLLLQRKDLLFSQMYDKLSENSVAKGVFLECLEPYIL
                     SDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDITSLDIQQVVLMCWENRLYDAM
                     IYVYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPL
                     GDIPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLLHFDTREFLNVLALTFED
                     FKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLF
                     DQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYE
                     REHQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHMEELVSLK
                     PCKAAELVATHFSGQIEVVIGQLQNQLLLFKFLRSLLDPRERVHISQESLQIPPCVTE
                     QFIELLCQFSPDQVIETLQVLDCYHLEETIQITQKYQLHEVTAYLLEKKGDVHGAFLL
                     LLERLQSRLQEMTRQNENTKEDIQLKAVEDTMVETIALCQRNSQNLNQQQREALWFPL
                     LEAMMAPQKLSSSAAAPPHPHCEALKSLTMQVLNSMATFIALPSILQRILQDPIYGKG
                     KLGEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSI
                     CLQQYKRRQETADEIIVFSCGHLYHSFCLQSKECTLETEGQTRWTCYKCSSSNKAGKL
                     SENPSESKKGRITSPQIKMSPSYHQSKGDPPARKANSEPVLDPQQTQAFDQLCRLYRG
                     GSRLALLMELSQNRGGDSYRPFAGSQSGPAFNSIFQKENFQLQLAPPPVAED"
ORIGIN      
        1 atggaaaacg aaccaggcca ggagaatttg gaacagaacc cgtgcgccag gactgtggaa
       61 gaagagttga acaagtcttt taatttagaa gcttcccttt caaaattctc ttgcatagat
      121 ctggacaagg agctggagtt caaaaatgat ctgatcgatg acaaggagtt tgatattcct
      181 caggtggata ctcctccaac tctggagagc attcttaacg agacggacga tgaagaggag
      241 tcttttgttc tggaggaccc tacattgtta aacgtcgaca ccatcgactc tcactcctat
      301 gacacctcat ctgtggcaag ctcagacagt ggcgacaggg ccaacctaaa gaggaagaag
      361 aagttaccgg attctttctc cctgcatggg tcggttatgc gacattcact cctaaagggg
      421 atatctgcac agatcgtgtc ggcagccgac aaagtagatg ctggcttgcc gacagcaatt
      481 gcagtgtcca gtctgatcgc ggtgggaaca tctcacggat tggctttaat atttggaaaa
      541 gatcagaatc aagcgctgcg gctctgtctg ggcagcacta gcgttgggga gcagtatgga
      601 gccatctctg ccctcagtat caacaacgac tgctcaagac tcctctgtgg ctttgctaaa
      661 ggacagatca ccatgtggga tttggccagt gggaaacttc tcagatcaat aacagatgct
      721 catcctccag ggaccgcgat cttgcacatc aagttcacag atgatccaac tcttgcgatt
      781 tgcaacgaca gtggaggctc tgtttttgag ctaacattta agagagtcat gggcgtgaga
      841 acgtgtgagt ctaggtgtct gttcagcggc tccaagggtg aagtctgctg catcgagccc
      901 ctgcattcca agcccgagtt gaaagaccat cccatcacac agttctcact gctggccatg
      961 gcgtccttaa caaagatttt ggtcattggg ttgaaaccgt ccctgaaagt gtggatgact
     1021 ttcccctacg gacggatgga tccttccagt gtcccgttgc tggcctggca cttcgtggca
     1081 gtgagtaact gtgtgaatcc catgcttgcc ttctgcagag gcgacactgt tcacttcctc
     1141 ctggttaaga gagatgagtc tggcgcaata cacgtcacca agcaaaagca ccttcacctg
     1201 tactacgacc tgatcaactt cacttggata aactcccgca cagttgtgct tttagacagc
     1261 gtggagaagc tccacgtgat tgatcggcag actcaggagg aactggagac catggagatc
     1321 tcagaagtcc agctggtcta caacagcagc cacttcaagt cactggccac gggcgggaac
     1381 gtgagccagg ccctggcttt ggttggagag aaggcttgct accaatccat cagtagctat
     1441 ggaggacaga tcttctatct ggggacaaag tccgtttacg tgatgatgct gagaagctgg
     1501 agggagagga tggaccatct cctgaaacag gattgcctca cggaagcctt ggcccttgcg
     1561 tggtcttttc atgaaggaaa ggcaaaagca gtagtggggc tttctggcga tgtcagcaag
     1621 aggaaggctg tcgttgcaga ccggatggta gagattctgt tccattatgc agatcgggct
     1681 ctgaaaaagt gcccagacca gggaaaaatc caagtgatgg agcagcactt tcaggatacg
     1741 gtgccagtca tagtggacta ctgccttctg ctccagcgaa aggatcttct atttagccaa
     1801 atgtacgaca aactaagtga aaattccgtg gcgaaaggcg tgtttttaga gtgcctggag
     1861 ccatatatcc taagtgataa actggtggga attacacccc aggtcatgaa agatctgatc
     1921 gttcatttcc aagataaaaa actaatggag aatgtggaag ccctcattgt ccacatggac
     1981 atcaccagcc tggacattca gcaggtggtt ctcatgtgtt gggagaatcg tctgtatgac
     2041 gccatgatct atgtctacaa tagaggcatg aatgagttta tcagtccaat ggagaagctt
     2101 ttcaaagtca tcgccccacc tctgaatgca gggaagacgc tcacagatga gcaagtcgtt
     2161 atgggcaaca agcttctggt gtacatcagc tgttgcctgg caggtcgtgc ctaccctctt
     2221 ggtgacattc ctgaagatct tgtccccttg gttaaaaacc aggtttttga gtttctgatt
     2281 cgcctgcatt ctgtggaagc atcctctgag gaagaagtct atccttatgt tcggactttg
     2341 ctacattttg atacaagaga atttctgaat gtgttggcac tgacctttga ggactttaaa
     2401 aatgataagc aagccgtaga ataccagcag cgcattgtgg atattttact gaaagttatg
     2461 gtggagaatt cagatttcac cccgtcacaa gtggggtgcc tctttacatt cctcgctcgg
     2521 cagctcgcga agcccgacaa taccttgttt gtgaacagaa ccctctttga tcaagtcctt
     2581 gagttcctct gtagccctga cgatgactcc cgccattctg aaagacagca ggtgctttta
     2641 gaactgctgc aggctggggg catcgttcag tttgaagaga gtcggctcat ccgcatggca
     2701 gaaaaggcag aattctatca gatctgtgaa tttatgtatg agcgagaaca ccagtatgac
     2761 aagatcattg actgctacct gcacgacccg ttgagagagg aagaagtctt caattatatc
     2821 cacaacatct tgtctatccc cggtcacagt gctgaggaga agcagtccgt gtggcagaaa
     2881 gcaatggatc acatggagga acttgtgtcc ctgaagccct gtaaggctgc agagttggtt
     2941 gctactcact tctctggaca gattgaagta gtcattggac agcttcagaa ccagcttttg
     3001 cttttcaagt ttttgaggag tcttcttgat ccaagggaac gtgtccacat cagtcaggaa
     3061 tccctgcaga tcccaccttg cgttacagag cagttcattg agctcctgtg ccagttcagt
     3121 cctgaccaag tcatagagac actgcaagtc ctcgactgct accatctgga ggaaactatt
     3181 cagattacac aaaagtacca gctccacgaa gtcactgcat atctgttgga gaagaagggg
     3241 gatgtccatg gtgccttcct gctgctgctg gagaggctgc agagcaggct gcaagagatg
     3301 acccggcaga atgaaaatac caaggaggac atccaactga aagctgttga agataccatg
     3361 gtagagacca ttgctctttg ccagagaaat tcacagaatt tgaatcagca gcaacgagag
     3421 gcgctgtggt ttccactgtt ggaggcaatg atggcaccac agaagctgtc cagctcggct
     3481 gctgctcctc ctcatccgca ctgtgaggct ctgaagtctt tgaccatgca agtcctaaac
     3541 agcatggcca cgttcatcgc cctcccatcc atcctacaga gaatcctgca ggacccaatt
     3601 tatggaaaag gaaaacttgg agagatccag ggccttatcc tggggatgct ggacaccttt
     3661 aactatgagc aaaccttgct agaaacgaca gccagcctcc tgaaccagga tctccactgg
     3721 tcactgtgta acctgagagc gtcagtgtcc agaggactca atcccaaaca ggattactgt
     3781 tctatatgtt tacagcagta caaaagacgc caagaaacgg ccgatgagat tatcgtcttc
     3841 agctgtggcc atttgtatca ttcgttctgt ctacaaagta aggaatgcac cctagaaact
     3901 gagggtcaaa caagatggac gtgctacaaa tgcagctcaa gtaacaaagc gggcaaactc
     3961 agtgagaatc cttccgagag taagaaggga cggataacct cgccacagat aaaaatgtct
     4021 ccctcgtatc atcagtccaa aggggaccct cctgcccgga aggcaaactc agaacctgtt
     4081 ctggacccac agcaaacgca agcctttgac cagctctgcc ggctgtaccg aggaggttct
     4141 aggctggctc tccttatgga actctcgcag aaccgaggtg gcgacagcta taggccattt
     4201 gccggctccc agagcgggcc tgctttcaac agcatcttcc agaaggagaa cttccagctg
     4261 cagcttgcac ctccacctgt ggctgaagac tgaggcctcc cctgaagagc ccaggctgca
     4321 ggaggcaggg agggccccgg agccaccctg ccaccctccc tctcagggca atctccctgg
     4381 tgcagatcgg actgcagaca ggacagtttg atttcgctca gaatattact tcgttctacc
     4441 cagcccttca ggtgtaacac ttacccaacc acgtgtggtg tgagaagggg tctggggagg
     4501 gcatcaactg tgaaaagcaa aggttggcac tgggagagca gtggtctggg aagcaggtgt
     4561 ctgtcagtgt ttatgttaaa gccggtgacc agaagacctg ccctcctttg aaacaataaa
     4621 tgtctcggtg ttttgagtcc tgca
//
