LOCUS       XM_006248579            4601 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS8 subunit of CORVET complex (Vps8),
            transcript variant X7, mRNA.
ACCESSION   XM_006248579
VERSION     XM_006248579.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427620.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006248579.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4601
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4601
                     /gene="Vps8"
                     /note="VPS8 subunit of CORVET complex; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 46 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     142 samples with support for all annotated introns"
                     /db_xref="GeneID:287990"
                     /db_xref="RGD:1309443"
     CDS             315..4601
                     /gene="Vps8"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 8
                     homolog isoform X2"
                     /protein_id="XP_006248641.1"
                     /db_xref="GeneID:287990"
                     /db_xref="RGD:1309443"
                     /translation="MENEPGQENLEQNPCARTVEEELNKSFNLEASLSKFSCIDLDKE
                     LEFKNDLIDDKEFDIPQVDTPPTLESILNETDDEEESFVLEDPTLLNVDTIDSHSYDT
                     SSVASSDSGDRANLKRKKKLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAI
                     AVSSLIAVGTSHGLALIFDQNQALRLCLGSTSVGEQYGAISALSINNDCSRLLCGFAK
                     GQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDSGGSVFELTFKRVMG
                     VRTCESRCLFSGSKGEVCCIEPLHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLK
                     VWMTFPYGRMDPSSVPLLAWHFVAVSNCVNPMLAFCRGDTVHFLLVKRDESGAIHVTK
                     QKHLHLYYDLINFTWINSRTVVLLDSVEKLHVIDRQTQEELETMEISEVQLVYNSSHF
                     KSLATGGNVSQALALVGEKACYQSISSYGGQIFYLGTKSVYVMMLRSWRERMDHLLKQ
                     DCLTEALALAWSFHEGKAKAVVGLSGDVSKRKAVVADRMVEILFHYADRALKKCPDQG
                     KIQVMEQHFQDTVPVIVDYCLLLQRKDLLFSQMYDKLSENSVAKGVFLECLEPYILSD
                     KLVGITPQVMKDLIVHFQDKKLMENVEALIVHMDITSLDIQQVVLMCWENRLYDAMIY
                     VYNRGMNEFISPMEKLFKVIAPPLNAGKTLTDEQVVMGNKLLVYISCCLAGRAYPLGD
                     IPEDLVPLVKNQVFEFLIRLHSVEASSEEEVYPYVRTLLHFDTREFLNVLALTFEDFK
                     NDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRTLFDQ
                     VLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRLIRMAEKAEFYQICEFMYERE
                     HQYDKIIDCYLHDPLREEEVFNYIHNILSIPGHSAEEKQSVWQKAMDHMEELVSLKPC
                     KAAELVATHFSGQIEVVIGQLQNQLLLFKFLRSLLDPRERVHISQESLQIPPCVTEQF
                     IELLCQFSPDQVIETLQVLDCYHLEETIQITQKYQLHEVTAYLLEKKGDVHGAFLLLL
                     ERLQSRLQEMTRQNENTKEDIQLKAVEDTMVETIALCQRNSQNLNQQQREALWFPLLE
                     AMMAPQKLSSSAAAPPHPHCEALKSLTMQVLNSMATFIALPSILQRILQDPIYGKGKL
                     GEIQGLILGMLDTFNYEQTLLETTASLLNQDLHWSLCNLRASVSRGLNPKQDYCSICL
                     QQYKRRQETADEIIVFSCGHLYHSFCLQSKECTLETEGQTRWTCYKCSSSNKAGKLSE
                     NPSESKKGRITSPQIKMSPSYHQSKGDPPARKANSEPVLDPQQTQAFDQLCRLYRGGS
                     RLALLMELSQNRGGDSYRPFAGSQSGPAFNSIFQKENFQLQLAPPPVAED"
ORIGIN      
        1 gagggcgtga cgcagaggct cgcaccgccc agcgctgagc gtctctgggg aggagaaagg
       61 aagcgagctt gagagctgca gagagtgcgc gtgcgtgggc tgccctcctc ggggtcacgt
      121 gggccgggga cccgtcaagg cggacgcagg ctcagatgac caagtagaac cttatcaaga
      181 acgtctctga aatgtccagc taagaagaag atgtctaggt aacacctacc tccctaccga
      241 agagatctgc aacccaagac caaaagcaag aaacaactgc tgggagtggt tgaattcagt
      301 tatcgaaagc aaatatggaa aacgaaccag gccaggagaa tttggaacag aacccgtgcg
      361 ccaggactgt ggaagaagag ttgaacaagt cttttaattt agaagcttcc ctttcaaaat
      421 tctcttgcat agatctggac aaggagctgg agttcaaaaa tgatctgatc gatgacaagg
      481 agtttgatat tcctcaggtg gatactcctc caactctgga gagcattctt aacgagacgg
      541 acgatgaaga ggagtctttt gttctggagg accctacatt gttaaacgtc gacaccatcg
      601 actctcactc ctatgacacc tcatctgtgg caagctcaga cagtggcgac agggccaacc
      661 taaagaggaa gaagaagtta ccggattctt tctccctgca tgggtcggtt atgcgacatt
      721 cactcctaaa ggggatatct gcacagatcg tgtcggcagc cgacaaagta gatgctggct
      781 tgccgacagc aattgcagtg tccagtctga tcgcggtggg aacatctcac ggattggctt
      841 taatatttga tcagaatcaa gcgctgcggc tctgtctggg cagcactagc gttggggagc
      901 agtatggagc catctctgcc ctcagtatca acaacgactg ctcaagactc ctctgtggct
      961 ttgctaaagg acagatcacc atgtgggatt tggccagtgg gaaacttctc agatcaataa
     1021 cagatgctca tcctccaggg accgcgatct tgcacatcaa gttcacagat gatccaactc
     1081 ttgcgatttg caacgacagt ggaggctctg tttttgagct aacatttaag agagtcatgg
     1141 gcgtgagaac gtgtgagtct aggtgtctgt tcagcggctc caagggtgaa gtctgctgca
     1201 tcgagcccct gcattccaag cccgagttga aagaccatcc catcacacag ttctcactgc
     1261 tggccatggc gtccttaaca aagattttgg tcattgggtt gaaaccgtcc ctgaaagtgt
     1321 ggatgacttt cccctacgga cggatggatc cttccagtgt cccgttgctg gcctggcact
     1381 tcgtggcagt gagtaactgt gtgaatccca tgcttgcctt ctgcagaggc gacactgttc
     1441 acttcctcct ggttaagaga gatgagtctg gcgcaataca cgtcaccaag caaaagcacc
     1501 ttcacctgta ctacgacctg atcaacttca cttggataaa ctcccgcaca gttgtgcttt
     1561 tagacagcgt ggagaagctc cacgtgattg atcggcagac tcaggaggaa ctggagacca
     1621 tggagatctc agaagtccag ctggtctaca acagcagcca cttcaagtca ctggccacgg
     1681 gcgggaacgt gagccaggcc ctggctttgg ttggagagaa ggcttgctac caatccatca
     1741 gtagctatgg aggacagatc ttctatctgg ggacaaagtc cgtttacgtg atgatgctga
     1801 gaagctggag ggagaggatg gaccatctcc tgaaacagga ttgcctcacg gaagccttgg
     1861 cccttgcgtg gtcttttcat gaaggaaagg caaaagcagt agtggggctt tctggcgatg
     1921 tcagcaagag gaaggctgtc gttgcagacc ggatggtaga gattctgttc cattatgcag
     1981 atcgggctct gaaaaagtgc ccagaccagg gaaaaatcca agtgatggag cagcactttc
     2041 aggatacggt gccagtcata gtggactact gccttctgct ccagcgaaag gatcttctat
     2101 ttagccaaat gtacgacaaa ctaagtgaaa attccgtggc gaaaggcgtg tttttagagt
     2161 gcctggagcc atatatccta agtgataaac tggtgggaat tacaccccag gtcatgaaag
     2221 atctgatcgt tcatttccaa gataaaaaac taatggagaa tgtggaagcc ctcattgtcc
     2281 acatggacat caccagcctg gacattcagc aggtggttct catgtgttgg gagaatcgtc
     2341 tgtatgacgc catgatctat gtctacaata gaggcatgaa tgagtttatc agtccaatgg
     2401 agaagctttt caaagtcatc gccccacctc tgaatgcagg gaagacgctc acagatgagc
     2461 aagtcgttat gggcaacaag cttctggtgt acatcagctg ttgcctggca ggtcgtgcct
     2521 accctcttgg tgacattcct gaagatcttg tccccttggt taaaaaccag gtttttgagt
     2581 ttctgattcg cctgcattct gtggaagcat cctctgagga agaagtctat ccttatgttc
     2641 ggactttgct acattttgat acaagagaat ttctgaatgt gttggcactg acctttgagg
     2701 actttaaaaa tgataagcaa gccgtagaat accagcagcg cattgtggat attttactga
     2761 aagttatggt ggagaattca gatttcaccc cgtcacaagt ggggtgcctc tttacattcc
     2821 tcgctcggca gctcgcgaag cccgacaata ccttgtttgt gaacagaacc ctctttgatc
     2881 aagtccttga gttcctctgt agccctgacg atgactcccg ccattctgaa agacagcagg
     2941 tgcttttaga actgctgcag gctgggggca tcgttcagtt tgaagagagt cggctcatcc
     3001 gcatggcaga aaaggcagaa ttctatcaga tctgtgaatt tatgtatgag cgagaacacc
     3061 agtatgacaa gatcattgac tgctacctgc acgacccgtt gagagaggaa gaagtcttca
     3121 attatatcca caacatcttg tctatccccg gtcacagtgc tgaggagaag cagtccgtgt
     3181 ggcagaaagc aatggatcac atggaggaac ttgtgtccct gaagccctgt aaggctgcag
     3241 agttggttgc tactcacttc tctggacaga ttgaagtagt cattggacag cttcagaacc
     3301 agcttttgct tttcaagttt ttgaggagtc ttcttgatcc aagggaacgt gtccacatca
     3361 gtcaggaatc cctgcagatc ccaccttgcg ttacagagca gttcattgag ctcctgtgcc
     3421 agttcagtcc tgaccaagtc atagagacac tgcaagtcct cgactgctac catctggagg
     3481 aaactattca gattacacaa aagtaccagc tccacgaagt cactgcatat ctgttggaga
     3541 agaaggggga tgtccatggt gccttcctgc tgctgctgga gaggctgcag agcaggctgc
     3601 aagagatgac ccggcagaat gaaaatacca aggaggacat ccaactgaaa gctgttgaag
     3661 ataccatggt agagaccatt gctctttgcc agagaaattc acagaatttg aatcagcagc
     3721 aacgagaggc gctgtggttt ccactgttgg aggcaatgat ggcaccacag aagctgtcca
     3781 gctcggctgc tgctcctcct catccgcact gtgaggctct gaagtctttg accatgcaag
     3841 tcctaaacag catggccacg ttcatcgccc tcccatccat cctacagaga atcctgcagg
     3901 acccaattta tggaaaagga aaacttggag agatccaggg ccttatcctg gggatgctgg
     3961 acacctttaa ctatgagcaa accttgctag aaacgacagc cagcctcctg aaccaggatc
     4021 tccactggtc actgtgtaac ctgagagcgt cagtgtccag aggactcaat cccaaacagg
     4081 attactgttc tatatgttta cagcagtaca aaagacgcca agaaacggcc gatgagatta
     4141 tcgtcttcag ctgtggccat ttgtatcatt cgttctgtct acaaagtaag gaatgcaccc
     4201 tagaaactga gggtcaaaca agatggacgt gctacaaatg cagctcaagt aacaaagcgg
     4261 gcaaactcag tgagaatcct tccgagagta agaagggacg gataacctcg ccacagataa
     4321 aaatgtctcc ctcgtatcat cagtccaaag gggaccctcc tgcccggaag gcaaactcag
     4381 aacctgttct ggacccacag caaacgcaag cctttgacca gctctgccgg ctgtaccgag
     4441 gaggttctag gctggctctc cttatggaac tctcgcagaa ccgaggtggc gacagctata
     4501 ggccatttgc cggctcccag agcgggcctg ctttcaacag catcttccag aaggagaact
     4561 tccagctgca gcttgcacct ccacctgtgg ctgaagactg a
//
