LOCUS       NM_001107695            1334 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus vacuolar protein sorting 72 homolog (Vps72),
            mRNA.
ACCESSION   NM_001107695 XM_001059613 XM_227428
VERSION     NM_001107695.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1334)
  AUTHORS   Latrick CM, Marek M, Ouararhni K, Papin C, Stoll I, Ignatyeva M,
            Obri A, Ennifar E, Dimitrov S, Romier C and Hamiche A.
  TITLE     Molecular basis and specificity of H2A.Z-H2B recognition and
            deposition by the histone chaperone YL1
  JOURNAL   Nat Struct Mol Biol 23 (4), 309-316 (2016)
   PUBMED   26974126
REFERENCE   2  (bases 1 to 1334)
  AUTHORS   Watanabe S and Peterson CL.
  TITLE     The INO80 family of chromatin-remodeling enzymes: regulators of
            histone variant dynamics
  JOURNAL   Cold Spring Harb Symp Quant Biol 75, 35-42 (2010)
   PUBMED   21502417
  REMARK    Review article
REFERENCE   3  (bases 1 to 1334)
  AUTHORS   Deneault E, Cellot S, Faubert A, Laverdure JP, Frechette M,
            Chagraoui J, Mayotte N, Sauvageau M, Ting SB and Sauvageau G.
  TITLE     A functional screen to identify novel effectors of hematopoietic
            stem cell activity
  JOURNAL   Cell 137 (2), 369-379 (2009)
   PUBMED   19379700
REFERENCE   4  (bases 1 to 1334)
  AUTHORS   Doyon Y, Selleck W, Lane WS, Tan S and Cote J.
  TITLE     Structural and functional conservation of the NuA4 histone
            acetyltransferase complex from yeast to humans
  JOURNAL   Mol Cell Biol 24 (5), 1884-1896 (2004)
   PUBMED   14966270
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474015.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001059613.1, XM_227428.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161999.1, CV076791.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1334
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /note="vacuolar protein sorting 72 homolog"
                     /db_xref="GeneID:310661"
                     /db_xref="RGD:1306121"
     exon            1..178
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             62..1156
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /note="transcription factor-like 1"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 72
                     homolog"
                     /protein_id="NP_001101165.1"
                     /db_xref="GeneID:310661"
                     /db_xref="RGD:1306121"
                     /translation="MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDD
                     EYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRKVS
                     TPASSSQKAREEKTLLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKG
                     PHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQVHKKRKCPGPIITYHSVT
                     VPLVGEPGPKEENVDVEGLDPAPTSSALTAHAGTGPAVPPPHCSRTFITFSDDATFEE
                     WFPQGRPPKVPVREVCPVTHRPALYRDPVTDIPYATARAFKIIREAYKKYITAHGLPP
                     TASALGPGPPPPEPLPGAGPRALRQKIVIK"
     exon            179..331
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /inference="alignment:Splign:2.1.0"
     exon            332..446
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /inference="alignment:Splign:2.1.0"
     exon            447..623
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /inference="alignment:Splign:2.1.0"
     exon            624..768
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /inference="alignment:Splign:2.1.0"
     exon            769..1334
                     /gene="Vps72"
                     /gene_synonym="Tcfl1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcggcgagaa cccggagctg ggtaaggggc tgctggcggc ggcgcagtct ctgtaagcgg
       61 tatgagtttg gctgggggcc gagccccacg gaaaaccgct ggaaaccggc tttctgggct
      121 cctggaagca gaggaggaag atgagttcta ccagacgact tacgggggct tcactgagga
      181 gtctggagat gatgagtatc aaggagacca gtctgataca gaggacgagg tagactctga
      241 ctttgacatc gatgaaggag atgaaccgtc cagtgatggg gaagcagaag agcccagaag
      301 gaagcgcaga gtcgtcacga aagcctataa ggagcctcta aagagcttga ggcctcgcaa
      361 ggtcagtacc ccagcaagca gctcccagaa ggccagagag gagaagacgc tgctgccact
      421 ggagctacag gacgatggct ctgacagccg caagtccatg cgtcagtcta cagctgaaca
      481 cacacgacag acgttccttc gggttcaaga gaggcaagga cagtcccgga ggcggaaggg
      541 tccgcactgt gaacgaccac taacccagga agagctgctc agggaggcca agatcactga
      601 agagctcaac ttacgttcac tcgagaccta tgaaaggctt gaggctgaca aaaagaagca
      661 ggttcacaag aagcggaagt gccctgggcc aataatcacc taccattcag tgacggtgcc
      721 acttgttggg gagccaggtc ccaaggaaga gaatgtggat gtggaaggac ttgatcctgc
      781 tcctacgtcc tctgcactga ctgcacatgc tggcactgga cctgccgtcc ctcctcctca
      841 ctgctcacgt accttcatca cattcagtga tgatgccacg tttgaagaat ggttccccca
      901 agggcgacca ccaaaggtcc ctgttcggga ggtctgccca gtgacccacc gtccagcttt
      961 gtaccgggac cctgttacag acatacccta tgccactgct agagccttca agatcatccg
     1021 tgaggcgtac aagaagtaca tcactgccca cggactacca cccactgcct cagcgctggg
     1081 ccccgggccc ccaccccccg agccactccc tggcgctggg ccccgagcct tgcgtcagaa
     1141 gattgtcatc aaatagaggc acctgacccc tacctaaagt ccctctcctg acctggctcc
     1201 actctgcccc tcccttccca tctctgtcct tgttgacctt tgccatggtt tttcctcagg
     1261 tcctccctag tcatttgttt gcttgtgctc ttcggttttt tttaatctaa taaagtggta
     1321 gaaatgtaaa atcc
//
