LOCUS       XM_039091649            3605 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS54 subunit of GARP complex (Vps54),
            transcript variant X4, mRNA.
ACCESSION   XM_039091649
VERSION     XM_039091649.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091649.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3605
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3605
                     /gene="Vps54"
                     /gene_synonym="Vsp54"
                     /note="VPS54 subunit of GARP complex; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 38 ESTs, 2 long SRA reads, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 141 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:286932"
                     /db_xref="RGD:628718"
     CDS             156..3089
                     /gene="Vps54"
                     /gene_synonym="Vsp54"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 54
                     isoform X3"
                     /protein_id="XP_038947577.1"
                     /db_xref="GeneID:286932"
                     /db_xref="RGD:628718"
                     /translation="MASSHSSSPVPQGSSSDVFFKKEVDPTKHVRPVQSLPDVCPKEP
                     TGDSHSLCVAPSLVTDQHRWTVYHSKVNLPAALNDPTLAKRESDFFTKTWGLDFVDTE
                     VIPSLYLPQISKEHFIAYQQEISQREKIHERCKNICPPKDTFDRTLLHIHDKSRTDLE
                     QVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEV
                     NIAHQISLRSEAFFHAMTSQHELQDYLKKTSQAVKMLRDKIAQIDKVMCEGSLQILRL
                     ALTRNNCVKVYNKLKLMATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGVH
                     SFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLEGECQVLEEERLVSLVFGLLKQ
                     RKLNFLEIYGEEMIITAKNIIKECVINKVAQVEEIDTDAVVKLADQMRMLNFPQWIDL
                     LKDIFSKFTIFLQRVKATLNVIHSVVLSVLDKNQRTRELEEVSQQRSAGKDNSLDTEV
                     AYLTHEGLFISDAFSEAEPASAAVDTTSQRNTSPHSEPCSSDSVSEPECTTDSSSSKE
                     QTPASATLGGVDIIVSEDMRLTDLELGKLASNIQELLCNASDVCHDRAVKFLMSRAKD
                     GFLEKLNSTEFIALSRLMETFIVDTEQICGRKSTSLLGALQSQANKFVNRFHEERRTK
                     LSLLLDNERWKQADVPAEFQDLVDSIADGKIALPDKKPAATEDRKPADVLVVEGHQYA
                     VVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLTDLLKYFNSRSCQLVLGAGALQVVG
                     LKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLPPKQWSLLRHFDHITKDYHDHIDE
                     ISSKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLF
                     LRINASYKFHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEI
                     WEQKR"
ORIGIN      
        1 cgggctcgga cccggcgcgc agggcggcgg cggcggcggc ggcgacgacc gcggagcagc
       61 agtctcggcg cgacgtggaa ggatggaggc ggcggtgcac taggcctcgt ctggggctgc
      121 cgcccgggac tgcagtcgag tggtgatttt atgcaatggc ttcaagccac agttcttctc
      181 cagtgcctca aggaagcagc agtgatgttt tctttaaaaa agaggtagat ccgacaaagc
      241 acgtccgacc tgtgcagtca ctgccagacg tgtgtcccaa ggagcccaca ggtgattcac
      301 atagtttatg tgttgcccca tctctagtta cagatcaaca tagatggact gtgtatcatt
      361 ccaaagtaaa tctcccagca gcattaaatg atcctacgtt agcaaaaaga gaatcggact
      421 tcttcacaaa aacttgggga ttggactttg tggacactga agtcatacct tcactctacc
      481 tcccacagat cagcaaggaa cattttatag catatcagca ggagatctct cagagagaga
      541 agattcatga gagatgcaag aatatttgtc ctcctaaaga tacctttgac aggactcttt
      601 tacatattca tgataaatcc aggacagatc tggagcaagt acctaagatt tttatgaaac
      661 cagattttgc cttggatgat tctttaactt ttaattcagt tttaccatgg tctcatttta
      721 atactgctgg tggaaaagga aatcgtgatg cagcttcttc caagttgctt caagaaaagc
      781 tgagccatta tctggatatt gtggaagtca acattgctca ccagatctct ctgcgttcag
      841 aagcattttt tcatgcaatg acctctcaac acgaattgca ggactacctc aagaaaactt
      901 cccaggctgt aaaaatgctt cgagataaaa ttgcacagat tgataaagtt atgtgtgaag
      961 gatcactaca gattttaaga ctggcactta ccagaaataa ttgtgttaaa gtatacaata
     1021 aactgaagtt gatggccact gtacaccaaa ctcagcccac agtgcaggtg ctgctgtcca
     1081 cttctgagtt cgtcggcgcg ctggacttaa tagcaacgac tcaagaggtt ctgcagcagg
     1141 agctgcaggg cgttcacagc ttccggcatt tgggatcaca gctttgtgaa ttagaaaagc
     1201 tgattgataa aatgatgatt gcagagtttt ctacttattc tcatagtgac ttaaacagac
     1261 cgctggaagg ggaatgccaa gttttagaag aggaaagatt agtatctcta gtgtttgggc
     1321 ttttgaaaca aagaaaactt aattttttag aaatctatgg tgaagaaatg attattacag
     1381 caaagaacat cattaaagag tgtgtgatta ataaagttgc acaagtagaa gaaatagaca
     1441 cagatgctgt tgtgaagctt gcagatcaaa tgagaatgct gaattttccc cagtggattg
     1501 atctgttaaa ggatattttc tctaagttta caattttcct acagagagtt aaggcaacac
     1561 tgaatgtcat ccacagtgtt gttctctcag ttcttgacaa aaaccaaagg actagagaat
     1621 tggaggaggt ctcacagcag aggagtgctg ggaaggacaa ctccttggac acagaggtgg
     1681 cttacctgac gcacgaaggc ctgttcataa gtgacgcttt cagtgaggct gagccagcgt
     1741 ccgcggcagt cgatactacc tctcagagaa acacgtctcc acacagcgag ccctgcagca
     1801 gcgattcggt atccgaacca gaatgtacta ctgattcctc atccagcaag gagcagacac
     1861 cagcgtctgc cactctggga ggtgtagaca tcatagtcag tgaagacatg agattaactg
     1921 acttggagct tggaaaatta gcaagtaaca tccaggaatt attgtgtaat gcttctgacg
     1981 tatgccacga tcgagctgtc aaatttctca tgtcaagagc aaaggatggt tttcttgaaa
     2041 agctgaattc cacggagttc atagcactgt cgagattaat ggagacgttc atcgtggaca
     2101 ctgagcagat ttgtgggagg aagagcacct cactgcttgg cgcccttcag agccaagcaa
     2161 acaagtttgt gaacaggttt cacgaggaga ggcggaccaa gctcagcctc cttttagaca
     2221 atgagcgttg gaagcaggct gatgtgcccg cagaatttca ggatctagtt gattctatag
     2281 cagatggaaa gatcgcttta cctgataaaa agccagcagc tacagaagac aggaagcccg
     2341 ccgatgttct tgttgtcgag gggcaccagt atgctgtcgt cggaactgtc ttgctgttga
     2401 taagaatcat ccttgagtat tgccagtgtg tggataacat cccctctgtc actactgaca
     2461 tgctcactcg cctgacggac ttgctgaagt acttcaattc aagaagttgc cagttagttc
     2521 ttggagctgg tgctttgcaa gttgttggac taaaaacaat tactacaaaa aacttggccc
     2581 tctcttcacg gtgtttgcag ctgattgtgc actacattcc tgtgatccgg gctcactttg
     2641 aggcccggct gccccccaag cagtggagcc tgcttaggca tttcgatcac atcaccaagg
     2701 attaccatga ccatatagat gagatatcat ctaagcttgt agccataatg gatagcctat
     2761 ttgataagct gttatcaaag tatgaggtga aagctcctgt tccttcccca tgtttcagga
     2821 atatttgtaa gcaaatgaca aaaatgcatg aagctatatt tgatcttctt cccgaagaac
     2881 agacgcagat gttattttta agaattaatg caagttacaa attccacttg aaaaaacagt
     2941 tatcacactt aaatgtaata aatgatggag gacctcaaaa tgggttggtc acagcagacg
     3001 tagcttttta cactggaaat cttcaagcct taaaaggcct taaagatctg gatctaaata
     3061 tggcggagat ctgggaacag aagaggtgat gacagactgg agacctgggt cgttcatctg
     3121 accatgggat gtttttgaag aaaatctgga tgcctgctgt gctaggaact gaacctggga
     3181 cccaaagtga actaaggcgg ggaagggaag agaagatcag tgttgggaac tggattcagt
     3241 gggatctaca gagaatgctc ttctgtgcat ccttcaggaa ggagtagctg atcaggtgtc
     3301 taccgcattt ttcattctct ctggaaacag actcaggttt ctttggacca aatccaaaag
     3361 aacacatagc tgtaagacag ctgcagttgc ctagaatgct ccgtaaactt tatataaaat
     3421 gctctgcatt tctcccagtg caatgaaatt catatggtgt cccaccttat ttaatgatgg
     3481 tacaattgaa catattaaat cttagtcaac ctctgtagga agttttctct atgaaagtaa
     3541 agctatttga aaaattattt ttttacagat ctttataaaa aataaacatc ttttgattgc
     3601 ttgga
//
