LOCUS       XM_039098438            2408 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS52 subunit of GARP complex (Vps52),
            transcript variant X4, mRNA.
ACCESSION   XM_039098438
VERSION     XM_039098438.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098438.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2408
                     /gene="Vps52"
                     /gene_synonym="Are1; Sacm2l"
                     /note="VPS52 subunit of GARP complex; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 2 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 146
                     samples with support for all annotated introns"
                     /db_xref="GeneID:25218"
                     /db_xref="RGD:3618"
     CDS             234..2366
                     /gene="Vps52"
                     /gene_synonym="Are1; Sacm2l"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 52
                     homolog isoform X4"
                     /protein_id="XP_038954366.1"
                     /db_xref="GeneID:25218"
                     /db_xref="RGD:3618"
                     /translation="MAAAATMAAAARELVLRAGASDMEEEEGPLGAGSGLQEPLQLGE
                     LDITSDEFILDEVDVHIQANLEDELVKEALKTGVDLRHYSKQVELELQQIEQKSIRDY
                     IQESENIASLHNQITACDAVLERMEQMLGAFQSDLSSISCEIRTLQEQSGAMNIRLRN
                     RQAVRGKLGELVDGLVVPSALVTAILEAPVTEPRFLEQLQELDAKAAAVREQEARGTA
                     ACADVRGVLDRLRVKAVTKIREFILQKIYSFRKPMTNYQIPQTALLKYRFFYQFLLGN
                     ERATAKEVRDEYVETLSKIYLSYYRSYVGRLMKVQYEEVAEKDDLMGVEDTAKKGFFS
                     KPSLRSRNTIFTLGTRGAVISPAELEAPILVPHTAQRGEQRYPFEALFRSQHYALLDN
                     SCREYLFICEFFVVSGPAAHDLFHAVMGRTLSMTLPLEQQLTFSCLPVAVPQKHLESY
                     LADCYDAIAVFLCIHIVLRFRNIAAKRDVPALDRYWEQVLALLWPRFELILEMNVQSV
                     RSTDPQRLGGLDTRPHYITRRYAEFSSALVSINQTIPNERTLQLLGQLQVEVENFVLR
                     VAAEFSSRKEQLVFLINNYDMMLGVLMERAADDSKEVESFQQLLNARTQEFIEELLSP
                     PFGGLVAFVKEAEALIERGQAERLRGEEARVTQLIRGFGSSWKASVESLSQDVMRSFT
                     NFRNGTSIIQGALTQPTHSALYRGRSHS"
ORIGIN      
        1 gtgcggccga ggagcgaaag gttccggagc agggttgtgt tcaagacgtt caccttcccg
       61 tttgcaccgg accgaagtga tcaaagccta acgggactct ggagccaatc acgttagctc
      121 aactatctgg gaaccttttg ttgctccgta gaagacgttc caggacttgt ggctttgctt
      181 cgggaaacgg actctcagag actgacagct gccggaagtg aggctgcggg ggaatggcag
      241 ccgcggcgac catggcggct gctgcccggg agctggtgtt gcgggccggc gcttcagata
      301 tggaggagga ggagggcccg ctgggggctg gttctggact ccaagagccc ctacaactcg
      361 gggagttgga tatcacctct gatgaattca tcttggatga agtggatgtt cacatccagg
      421 caaatctgga agacgagtta gtgaaggaag ctctcaaaac gggtgtggat cttcgacact
      481 attcaaagca ggtggagcta gagctgcagc agattgagca gaagtcaatc cgggactaca
      541 tccaagagag tgaaaacata gcctctctgc acaatcagat cacagcctgt gatgccgtcc
      601 tagagcgcat ggagcagatg ctgggagctt ttcagagcga cctcagctcc atcagctgtg
      661 agatccgcac cctgcaggag cagtcggggg ccatgaacat ccgacttcgt aaccggcagg
      721 cagttcgggg gaaacttggg gaactcgtcg atgggctagt ggtgccctct gctctggtca
      781 cagcaattct cgaagctcca gtgacagagc ccaggttcct ggagcagctc caggagctgg
      841 acgccaaggc ggctgcggtc agagagcagg aggcgagagg cacggccgcc tgtgcagacg
      901 tcagaggcgt gctcgaccgg ctccgggtca aggcggtgac aaagatccgt gagttcattc
      961 tccagaagat ttactcgttc cgaaagccga tgaccaacta tcagatcccc cagacggccc
     1021 tgctgaagta caggtttttc tatcagtttc tgctgggcaa cgagcgtgct acagccaagg
     1081 aggtcaggga tgagtacgta gagacgctga gcaagatcta cctgtcatac taccgctcgt
     1141 acgtggggcg gctcatgaaa gtgcagtacg aggaagttgc tgagaaagac gatctaatgg
     1201 gtgtagaaga cacagcaaag aaaggattct tctcgaagcc gtccctgcga agcaggaaca
     1261 ccatctttac cctgggcacc cgtggtgctg tcatctcacc ggccgagctc gaggccccca
     1321 tcctggtgcc ccatactgcc cagcgtggag agcagaggta cccgtttgaa gcactcttcc
     1381 gcagccagca ctatgccctc cttgacaatt cttgccgtga atatctcttc atctgtgaat
     1441 ttttcgtcgt ctctggcccg gctgcccatg acctgttcca cgccgtcatg ggccgcacgc
     1501 tgtccatgac gctgccactc gaacaacagc taacgttcag ttgtctgcct gttgctgtgc
     1561 cacagaaaca cctggagtcc tacctggccg actgctacga cgccattgct gtttttctct
     1621 gtatccacat cgttctccgg ttccgcaaca tagcagcaaa gagggacgtc cctgccctgg
     1681 acagatactg ggagcaggtg ctggccctgc tgtggcctcg atttgagctc atcctggaga
     1741 tgaatgtgca gagcgtccgc agcactgacc cccagcgcct cggggggctg gacacccggc
     1801 cccactatat cacacgccgc tacgccgagt tctcctccgc gcttgtcagc atcaaccaga
     1861 ccatccccaa tgagcgcacg ctgcagctgc tgggacagct acaggtggag gtggagaact
     1921 ttgtcctccg cgtggctgcg gagttctcct ccaggaagga gcagctcgtg tttctgatca
     1981 acaactatga catgatgctg ggtgtgctga tggagcgggc tgctgacgac agcaaagagg
     2041 tggagagttt ccagcagctg ctcaatgctc ggacacagga gttcattgaa gagttgctgt
     2101 cacccccctt tggaggtctg gtggcatttg tgaaggaggc tgaagccttg attgagcgtg
     2161 ggcaggctga gcggctccga ggggaggaag cccgagtcac ccagctgatc cgcggctttg
     2221 gtagttcctg gaaggcgtca gtggagtccc tgagtcagga tgtaatgcgg agttttacca
     2281 actttcgaaa tggaaccagc atcatccagg gggcgctcac acagccgacc cactctgctc
     2341 tgtacagggg gcgctcacac agctgacccc actctgctct gtacaggggg cgctcacaca
     2401 gctgatcc
//
