LOCUS       NM_001416313            2516 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus VPS51 subunit of GARP complex (Vps51), mRNA.
ACCESSION   NM_001416313
VERSION     NM_001416313.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Schindler,C., Chen,Y., Pu,J., Guo,X. and Bonifacino,J.S.
  TITLE     EARP is a multisubunit tethering complex involved in endocytic
            recycling
  JOURNAL   Nat Cell Biol 17 (5), 639-650 (2015)
   PUBMED   25799061
REFERENCE   3  (bases 1 to 2516)
  AUTHORS   Perez-Victoria,F.J., Schindler,C., Magadan,J.G., Mardones,G.A.,
            Delevoye,C., Romao,M., Raposo,G. and Bonifacino,J.S.
  TITLE     Ang2/fat-free is a conserved subunit of the Golgi-associated
            retrograde protein complex
  JOURNAL   Mol Biol Cell 21 (19), 3386-3395 (2010)
   PUBMED   20685960
REFERENCE   4  (bases 1 to 2516)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ209756.1, SRR26360190.2827287.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMN12840106 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-267               JAXUCZ010000001.1  212799442-212799708 c
            268-397             JAXUCZ010000001.1  212798857-212798986 c
            398-544             JAXUCZ010000001.1  212793282-212793428 c
            545-764             JAXUCZ010000001.1  212792989-212793208 c
            765-1482            JAXUCZ010000001.1  212792163-212792880 c
            1483-1698           JAXUCZ010000001.1  212791627-212791842 c
            1699-1917           JAXUCZ010000001.1  212791228-212791446 c
            1918-2039           JAXUCZ010000001.1  212790795-212790916 c
            2040-2127           JAXUCZ010000001.1  212790621-212790708 c
            2128-2516           JAXUCZ010000001.1  212789721-212790109 c
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2516
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /note="VPS51 subunit of GARP complex"
                     /db_xref="GeneID:120097389"
                     /db_xref="RGD:2319165"
     exon            1..267
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..2388
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /note="vacuolar protein sorting 51 homolog; VPS51 GARP
                     complex subunit; chromosome 11 open reading frame 2-like"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 51
                     homolog"
                     /protein_id="NP_001403242.1"
                     /db_xref="GeneID:120097389"
                     /db_xref="RGD:2319165"
                     /translation="MAAAAAVGPGLGSGPGDSPEGSEADAPERRRKAHGMLKLYYGLS
                     EGEATGHSAGSDPLDPTDLNGAHFDPEVYLDKLRRECPLAQLMDSETDMVRQIRALDS
                     DMQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLATNMAVITNFSARISATLQDR
                     HERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYGQAVRYQGRARAVLQQYQHLPS
                     FRAIQDDCQVITARLAQQLRQRFREGCSGAPEQAECVELLLALGEPAEELCEEFLAHA
                     RGRLEEELSSLETELGPSPPAPDVLEFTDRGGNGFVGGLCQVAAAYQELFAAQGPAGA
                     EKLAAFAQELGGRYFALVERRLAQEQGGSDNSLLVRALDRFHRRLRAPGALLAAAGLS
                     ESATEIVERVARERLSHHLQGLKAAFLSCLTDVRQALAAPRLAGKEGPSLAELLANVA
                     SSILSHIKASLASVHLFTAKEVSFSNKPYFRGEFCSQGVREGLIVGFIRSMCQTAQGF
                     CDSPGEKGGATPPALLLLLSRLCLDYETATISYILTLTDEQFLVQDQSPVTPVSTLCA
                     EARETARRLLTHYVKVQGLVISQMLRKSVETRDWLSTLEPRNVRAVMKRVVEDTTAID
                     VQVGLLYEEGVRKAQSSDSSKRTFSVYSSSRQQGRYAPSYTPSAPMDTNLLSNIQKLF
                     SERIDVFSPVEFNKVSVLTGIIKISLKTLLECVRLRTFGRFGLQQVQVDCHFLQLYLW
                     RFVADEELVHLLLDEVVASAALRCPDPVPMEPSVVEVICERG"
     exon            268..397
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            398..544
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            545..764
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            765..1482
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            1483..1698
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            1699..1917
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            1918..2039
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            2040..2127
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
     exon            2128..2516
                     /gene="Vps51"
                     /gene_synonym="RGD1560544"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctcccctg tctcaccccc ttgtgttgag gttggagcta tggcggccgc ggcagctgtg
       61 gggcctggcc tagggtccgg gcctggggat tccccagaag gttccgaggc agacgctccg
      121 gagcgtcggc ggaaggctca cgggatgctg aagctttact acggtctctc ggaaggggag
      181 gcgacggggc actccgctgg gtctgaccct ctagacccaa cagatctcaa tggggcgcac
      241 ttcgacccgg aagtttatct ggacaagctg cgtagagagt gtcctctggc ccagctgatg
      301 gacagtgaga cggacatggt gcggcagatc cgggctctag acagcgacat gcagaccctt
      361 gtctatgaga actacaacaa gttcatctca gctacagaca ccattcggaa gatgaagaat
      421 gacttccgga agatggaaga cgagatggac cggctggcca ccaacatggc agtgatcacc
      481 aacttcagcg cacgcatcag cgccacacta caggaccgac acgagcgcat caccaagcta
      541 gcaggggtcc atgcactact gcggaagctg cagttcctgt tcgagctgcc ttcgcgcctc
      601 accaagtgcg tggagctggg tgcctacggg caggctgtgc gctaccaggg tcgtgccagg
      661 gccgtgctgc agcagtacca gcacctgccc tccttccgcg ccatccagga tgactgccag
      721 gtcatcacag cccgcttggc ccagcagctg cggcagcgct tcagggaagg ctgctcaggt
      781 gccccggagc aggctgagtg cgtggagctg ctgctggcct taggcgagcc cgctgaggag
      841 ctgtgtgagg agttcctggc acacgctcgg ggtcgcctgg aagaagagct gagcagcctg
      901 gagaccgagc tggggccctc ccctcccgca cctgatgtgt tagagttcac tgaccgtggt
      961 ggcaatggtt ttgtgggtgg cctctgccag gtggcagcgg cctaccagga gctgtttgcc
     1021 gctcagggcc ctgctggtgc agagaagctg gcagccttcg cgcaggagtt gggtggccgc
     1081 tactttgcac tggttgagcg gcggctggcc caggagcagg gtggcagtga caactcactg
     1141 ctggtgcggg cactagatcg cttccaccgg cgcctgcgag cacctggggc gctgttggct
     1201 gccgctgggc tttcagagtc agccacagag attgtggagc gagtggcccg ggagcgcctg
     1261 agccaccatc tgcagggtct gaaggctgct ttcctgagtt gcctgacaga tgttcgccag
     1321 gccctggcag cacctcgcct agctgggaag gagggcccca gcctggctga gttgctggcc
     1381 aatgtggcca gctccattct gagccacatc aaggcctcac tggcctctgt gcatctcttc
     1441 accgccaagg aggtctcctt ctccaataag ccctacttca ggggtgagtt ctgcagccag
     1501 ggagtccgtg agggcctcat cgtgggtttc atccgctcca tgtgtcagac agcccagggc
     1561 ttctgtgaca gccctgggga aaagggaggt gccacgccac ctgccctgct cctgctgctc
     1621 tctcgcctct gcctggacta tgagacagcc accatctcct acatcctcac actcaccgat
     1681 gaacagtttc tggtgcagga tcagtctcct gttacacctg tgagcacact gtgtgcagag
     1741 gccagagaga cagcacggcg gctgctgaca cactatgtga aggtacaagg cctggtcata
     1801 tcacagatgc tacgcaagag tgtggagaca cgggactggc tcagtactct ggagccccgg
     1861 aacgtgcgtg ctgtcatgaa gcgtgtggtg gaggacacta cagctattga tgtacaggtg
     1921 gggctcctgt atgaagaggg tgtccgcaag gcccagagca gtgactccag caaaaggacc
     1981 ttctctgtgt acagcagctc ccggcagcag ggccgctatg cacctagcta cacacccagt
     2041 gctccgatgg acacaaacct cttgagcaat attcagaagc tgttctctga acgaatcgat
     2101 gtgttcagcc ctgtggaatt caataaggtg tcggtgctga ctggcattat taaaatcagc
     2161 ttgaagacac tactggagtg tgtgcgcttg cgcacctttg ggcgcttcgg gctgcagcag
     2221 gtgcaggtgg actgccactt tctgcagctc tatttgtggc gctttgtggc tgatgaggag
     2281 ctagtgcacc tgctgctgga cgaagtagta gcctcagctg ccctacgttg tcccgaccca
     2341 gtgcccatgg aacccagtgt tgtcgaggtc atctgcgagc gcggctagaa tccactgacg
     2401 agtcccggag cagccttatc gccctgtcct ccccgtgccc tgttctcacc ctggaggccc
     2461 ttccccgctg gcgggtttgt gaaccattct aataaattta tgtgtcctcc tccttc
//
