LOCUS       XM_039095720            2999 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS41 subunit of HOPS complex (Vps41),
            transcript variant X2, mRNA.
ACCESSION   XM_039095720
VERSION     XM_039095720.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095720.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2999
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2999
                     /gene="Vps41"
                     /gene_synonym="RGD1560511"
                     /note="VPS41 subunit of HOPS complex; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 63 ESTs, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 86 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:306991"
                     /db_xref="RGD:1560511"
     CDS             16..2418
                     /gene="Vps41"
                     /gene_synonym="RGD1560511"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 41
                     homolog isoform X2"
                     /protein_id="XP_038951648.1"
                     /db_xref="GeneID:306991"
                     /db_xref="RGD:1560511"
                     /translation="MNIEEQASCGMVEHLLAMCPGAAYPGLESPVKINQISLDESGEH
                     MGVCSEDGKLQVFGLYSGEEFHETFDCPIKIVAVHPQFVRSSCKQFVTGGKKLLLFER
                     TWMNRWKSSVLHEGEGNIRSVKWRGHLIAWANNMGVKIFDITSKQRITNVPRDDISLR
                     PDMYPCSLCWKDAVTLIIGWGTSIKICSVKERHASEMRDLPSRYVEIVSQFETEFYIS
                     GLAPLCDQLVVLSYVKEVSEKTEREYCARPRLDIIQPLPETCEEISSDALTVRGFQEN
                     ECRDYHLEYSEGESLFYVVSPRDVVVAKERDQDDHIDWLLEKKKYEEALMAAEISHRN
                     IKRHKILEIGLAYVNHLVERGEYDMAARKCQKILGKNASLWEYEVYKFKEIGQLKAIS
                     PYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIREWPGDLYNNSVIVQAVRDHLKKD
                     SQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQLIHKHNLFSSIKDKIVLLMDF
                     DSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKLFKRDHHKGQRYHEKQISLY
                     AEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLSRMGNSRSALKMIMEELH
                     DVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHVDPILLIHRIKEGMEI
                     PNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMKGVLVDEENICESC
                     LSPILPTDAAKPFSVVVFHCRHMFHKECLPMPSLNAPAQYCNICSAKNRGPGSAILEM
                     KK"
ORIGIN      
        1 acgattaaag ctgctatgaa catagaggag caagcgtctt gtgggatggt ggagcatctt
       61 ttggctatgt gcccaggagc agcatacccg ggtcttgaga gtcctgtgaa gataaaccag
      121 atcagcttgg atgaaagcgg agaacatatg ggcgtgtgct cggaggatgg caagctgcag
      181 gtctttggac tgtactctgg agaagaattc catgagactt tcgactgtcc cattaaaatc
      241 gttgctgtgc acccccagtt cgtgagatcc agttgtaagc agttcgtgac tggtgggaaa
      301 aagttgctgc tatttgaacg gacgtggatg aacagatgga agtcttctgt cctgcacgaa
      361 ggggaaggga acataaggag cgtgaagtgg agaggccatc tgattgcctg ggccaacaac
      421 atgggtgtga agatttttga catcacctca aagcaaagaa tcaccaacgt tccccgagat
      481 gatataagtc ttcgcccaga tatgtatccc tgcagcctct gctggaagga tgctgtgaca
      541 ctgattatcg gctggggaac ttccatcaag atatgctcag tgaaggaacg ccatgccagt
      601 gagatgaggg atctgccaag tcgatacgtt gaaatagtgt ctcaatttga aactgaattc
      661 tacattagtg gacttgcacc tctctgtgat cagcttgttg tactttccta cgtaaaggag
      721 gtttcggaaa aaacggaaag agaatactgt gcaagaccga gactggacat catccagcca
      781 cttccagaga cttgtgaaga gatctcatct gatgctttga cagtcagagg ttttcaggag
      841 aatgaatgta gggattacca cctagaatac tctgaagggg aatcactctt ctacgtcgtg
      901 agtccaagag atgtcgtcgt agccaaggag cgagaccagg atgatcatat cgactggctc
      961 cttgagaaga agaaatatga agaagctttg atggcagctg aaattagcca caggaacatt
     1021 aaaagacata agattctgga gatcgggttg gcatatgtaa accacctggt ggagagaggc
     1081 gagtacgaca tggccgcacg aaaatgccag aaaattcttg ggaaaaatgc atccctctgg
     1141 gaatacgaag tttacaaatt taaagaaatt ggacagctta aagcaattag tccctattta
     1201 cctcgagggg accccgttct gaaaccactc atctatgaaa tgattttgca cgaatttctg
     1261 gaaagtgatt atgagggctt tgccacattg atcagagaat ggcctggaga tctgtataac
     1321 aattctgtga tagttcaagc agttcgagac cacctgaaga aggacagtca gaacaagact
     1381 ttattgaaaa cactggcaga attgtatacc tatgacaaaa attatggcaa tgctctggaa
     1441 atatacttaa cgttaagaca taaagatgtt ttccaactga tacacaagca taatcttttc
     1501 agctccatca aggataaaat tgttttatta atggactttg attcagagaa agctgttgac
     1561 atgcttttgg acaatgaaga taaaatttca attaaaaaag tggtagaaga attagaagac
     1621 aggccagagc tgcagcatgt gtatttgcac aagctcttca agagagacca tcataaggga
     1681 cagcgctacc atgaaaaaca gatcagtctg tatgccgaat atgatcgacc aaacctactg
     1741 ccctttctcc gagacagtac ccattgccca ctagaaaagg ctcttgagat ctgtcaacaa
     1801 agaaactttg tagaagagac agtttacctt ctgagccgaa tgggaaacag tcgaagtgcc
     1861 ctgaagatga ttatggagga attgcatgat gttgataaag caattgagtt tgccaaggaa
     1921 caagatgatg gagagctctg ggaagatctg attctatatt ccattgacaa accaccattt
     1981 atcactggct tgttgaacaa cattggcaca cacgtagacc cgattctact cattcaccga
     2041 attaaggaag gaatggagat tcccaatttg agagattcct tggttaaaat tctgcaagat
     2101 tataacttac agattctgct tcgggaaggc tgcaagaaaa tcctcgtagc tgactctttg
     2161 tcattgctga aaaaaatgca ccgaacccaa atgaaaggcg ttctggttga cgaggagaat
     2221 atctgtgaat cgtgcctttc tcccatcctt ccaacagatg cagcgaagcc cttcagcgtg
     2281 gtggtcttcc attgtcggca catgttccac aaggagtgcc tacctatgcc aagcctgaat
     2341 gctcctgcac agtactgtaa catctgtagt gctaagaacc gtgggcctgg aagtgccatc
     2401 ctggagatga agaagtaggc ctgcctgcca ttaccactct actctggtga ccgttggacc
     2461 acagccgcta gctatgtcaa ggccaatgct gttctgtgat gtgttcaggg ctactctgtg
     2521 ttccacatca gttgttcctc cagaccttcc ttccagaagc tgttcttgtc actgatggag
     2581 aagtcagagc tgttcccatg ccatgaaata tttggattga caatcaatat ttcatgattt
     2641 gtttatttgg cttatttagg caacagatga acccaagtct cagagtgact tcattagacc
     2701 ctagttacac caccaggcat gaaccgcact gccgagaaca ctgccagctg cagacagccg
     2761 aaagttctgc tggtaacagt tctagcatgc ctggctatac tgtttgtcat cagcttccta
     2821 gtatgcattt ggtgaaacac tggaaactgt cactcgttca atgacgtgtg ggaataccat
     2881 tatctgatgt catgcaacct tatgcttgct acgtacatgc tatgcattct gactaatcga
     2941 gttatctgac cccattaggt aatcaatatc tgttgagtaa ataaacattg cccttctca
//
