LOCUS       NM_001128193            1560 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus VPS37D subunit of ESCRT-I (Vps37d), mRNA.
ACCESSION   NM_001128193 XM_001077519
VERSION     NM_001128193.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1560)
  AUTHORS   Agromayor M, Soler N, Caballe A, Kueck T, Freund SM, Allen MD,
            Bycroft M, Perisic O, Ye Y, McDonald B, Scheel H, Hofmann K, Neil
            SJ, Martin-Serrano J and Williams RL.
  TITLE     The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA
            domain
  JOURNAL   Structure 20 (3), 414-428 (2012)
   PUBMED   22405001
REFERENCE   2  (bases 1 to 1560)
  AUTHORS   Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta
            R, Wang NS and Knepper MA.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   3  (bases 1 to 1560)
  AUTHORS   Morita E, Sandrin V, Alam SL, Eckert DM, Gygi SP and Sundquist WI.
  TITLE     Identification of human MVB12 proteins as ESCRT-I subunits that
            function in HIV budding
  JOURNAL   Cell Host Microbe 2 (1), 41-53 (2007)
   PUBMED   18005716
REFERENCE   4  (bases 1 to 1560)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166560.1.
            
            On Jun 9, 2011 this sequence version replaced NM_001128193.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166560.1, CO400971.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1560
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..1560
                     /gene="Vps37d"
                     /note="VPS37D subunit of ESCRT-I"
                     /db_xref="GeneID:687208"
                     /db_xref="RGD:1587769"
     exon            1..177
                     /gene="Vps37d"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..825
                     /gene="Vps37d"
                     /note="vacuolar protein sorting 37D; vacuolar protein
                     sorting 37 homolog D; VPS37D, ESCRT-I subunit"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 37D"
                     /protein_id="NP_001121665.1"
                     /db_xref="GeneID:687208"
                     /db_xref="RGD:1587769"
                     /translation="MYRARAARAGPEPGSPGRFGILSTGQLRDLLQDEPKLDRIVRLS
                     RKFQGLQLERDACLASNYALAKENLALRPRLEMGRTALAIKYQELREVAENCADKLQR
                     LEKSMHRWSPQCALGWLQAELEEAEQEAEVQMEQLLLGEQSLEAFLPAFQRGRALAHL
                     RRTQAEKLQEVLRRRERSAQPAPTTAAAAAAAATAMDPPKPFPAAAVLPTGAARGPPP
                     AVPRSLPPLDSRPVPPVKGSPGCPFGPAPLLSPRPSQPEPPHR"
     exon            178..349
                     /gene="Vps37d"
                     /inference="alignment:Splign:2.1.0"
     exon            350..432
                     /gene="Vps37d"
                     /inference="alignment:Splign:2.1.0"
     exon            433..1536
                     /gene="Vps37d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgagccag cagccgagct gggggcgcgg gcgggcggta tgtaccgggc ccgggcggcg
       61 cgggcggggc cggagcccgg cagcccgggg cgctttggga tcctcagcac cgggcagctc
      121 cgggatctgc ttcaagatga gcccaagctg gaccggatcg tgcggctcag caggaagttc
      181 cagggtctgc agctggagcg ggatgcgtgc ttggcctcta actacgcgct ggccaaggag
      241 aacctggcct tgcgtcctcg cctggagatg ggccggacag ccctggccat caagtaccaa
      301 gagcttcgag aggtggccga gaactgcgca gacaagctgc agagactgga gaagagcatg
      361 catcgctgga gcccccaatg tgcgctgggc tggctgcagg ctgagctgga ggaggctgag
      421 caggaggctg aggtccagat ggagcagctg ctgctggggg aacagagtct ggaggccttc
      481 ctgccagcct tccagagggg ccgtgccctg gcccacctga ggcggacaca ggcagagaaa
      541 ctacaggaag tgctgaggcg tcgagagcgc tctgcccagc cggcccccac cactgctgct
      601 gcagctgctg ctgccgccac cgccatggat ccccccaaac ccttccctgc tgctgccgtc
      661 ctgcccactg gggccgcccg gggaccacct ccagcagtac cccggagcct gccccccttg
      721 gactcccgcc cagtgccccc agtgaagggc tcccccgggt gcccttttgg cccagcccct
      781 ttgctgagcc ctcgaccctc tcaacctgaa ccccctcatc ggtaggagcc agggtgcgcc
      841 ctcccagcgg gggtccagac aaacttgatt catggctcct cctcctcccc cactgcctgg
      901 gtggggggag gggcaggccc ctccccctag cctcaggcag gcccagggcc ctggaggctg
      961 agctggggaa gaggggctcc ccgaagaggc ccgtagaggg ctgggggtgg ggtgggcagg
     1021 gtgctggact tcggtcacca aggaaactct gcctttttat tttatttttt cgtctccccg
     1081 gctggggcct ccagggtgcc aagccaggtc ctcaaatgaa aaagaacttt atggggtcct
     1141 gcttcctcca ggggagtctt gcttgggggc ctgtcgcacc ctgccacact actgggctcg
     1201 aacaaccgcc aaggctaact ggattgttct cctcatatcc tgagctaacc aacccttcct
     1261 gcagtttgag ggccctccgc ctaggagccg ggtggtcatg ccccagctgc gggcccaggg
     1321 acacccccaa tggccttgca cctggccctg gggcaaggta ggacagaggc ctcttgacct
     1381 gcacaggtga gagcctgcca cccccaggaa agaccattct gtatttttct gtccctgtct
     1441 ccttagaatg gaaccttttt gagggcaggt ccttgtcttt gtatgttctg tccccagccc
     1501 cgcctcctag gggctgtcaa taaatgtgct gatggaaaaa aaaaaaaaaa aaaaaaaaaa
//
