LOCUS       XM_039089726            1172 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS33A core subunit of CORVET and HOPS
            complexes (Vps33a), transcript variant X3, mRNA.
ACCESSION   XM_039089726
VERSION     XM_039089726.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089726.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1172
                     /gene="Vps33a"
                     /gene_synonym="r-Vps33a"
                     /note="VPS33A core subunit of CORVET and HOPS complexes;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 4 ESTs, 3 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 19 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:65081"
                     /db_xref="RGD:620643"
     CDS             57..1157
                     /gene="Vps33a"
                     /gene_synonym="r-Vps33a"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 33A
                     isoform X3"
                     /protein_id="XP_038945654.1"
                     /db_xref="GeneID:65081"
                     /db_xref="RGD:620643"
                     /translation="MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTG
                     PFGLIAQYSLLKEHEVEKMFTLKGSRLPAADVKNIIFLVRPRLELMDMIAENVLSEDR
                     RGPTRDFHILFVPRRSLLCEQRLKDLGVLGSFIYREEYSLDLIPFDGDLLSMESESAF
                     KECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMVRMKREFTGSQN
                     SVFPVFDNLLLLDRNVDLLTPLASQLTYEGLIDEIYGIQNSYVKLPPEKFAPKKQGGG
                     GGKDLPTEAKKLQLNSAEELYAEIRDKNFNAVGSVLSKKAKIISAAFEVRRAILSAIL
                     PGNVEGRMLLAIHRSFAAQTPVCLRCLVCNQV"
ORIGIN      
        1 aacggtccgt cacgtgaccg tgggccccgc ctgggaaatg cgggtggtgg agcaagatgg
       61 cggctcacct gtcatacggg cgagtgaacc tgaacgtgct gcgcgaggcg gtgcgtcggg
      121 agctgcgcga gtttctggac aagtgcgctg ggagcaaggc aatagtgtgg gatgaatact
      181 taacaggacc atttggactg attgcacagt actcactact aaaggaacat gaagtggaaa
      241 aaatgttcac cctcaaagga agtcgtttgc cagcggctga tgtcaagaat atcatttttt
      301 tggtcagacc caggctagaa ttaatggata tgattgccga gaacgtactc agtgaggaca
      361 ggcgtggccc taccagggat ttccatattt tgtttgtgcc tcgtcggagc ctactgtgtg
      421 agcaaaggct gaaggacctg ggtgtgttgg gatcctttat ttatcgagag gagtacagtt
      481 tagatctcat tccatttgat ggggacctct tatccatgga gtcagagagc gctttcaaag
      541 aatgctacct tgaaggcgac cagacaagcc tgtaccacgc agccaagggg ctgatgaccc
      601 tgcaggcgct gtatggaact atcccccaga tctttgggaa aggagagtgt gctcggcaag
      661 tggccaatat gatggtcagg atgaaaaggg agtttacagg cagccaaaac tcagtgttcc
      721 ccgtgtttga taacctcttg ctgcttgatc gcaacgtgga tctgctgacg ccgctcgcct
      781 cccagctcac gtacgaagga ctcatcgacg agatttacgg cattcagaac agttatgtga
      841 agttacctcc agagaaattt gcacccaaga agcagggcgg tggtggcggg aaggaccttc
      901 ccacagaggc aaagaagctt cagctcaact ccgcagagga actctatgcc gagatccgag
      961 acaagaactt caacgctgtg ggctccgtgc tcagcaagaa ggcgaagatc atctccgcgg
     1021 cctttgaggt gaggcgagcc atcctgtcgg ccatcctgcc cgggaatgtt gagggaagga
     1081 tgctcctggc catacacagg agctttgcgg ctcagactcc tgtttgcctg agatgtttag
     1141 tgtgtaatca ggtttaaacc aaactaagaa gg
//
