LOCUS       NM_001108316            2126 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus VPS26 endosomal protein sorting factor C
            (Vps26c), mRNA.
ACCESSION   NM_001108316 XM_001054846 XM_001054904 XM_340974
VERSION     NM_001108316.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   McNally KE, Faulkner R, Steinberg F, Gallon M, Ghai R, Pim D,
            Langton P, Pearson N, Danson CM, Nagele H, Morris LL, Singla A,
            Overlee BL, Heesom KJ, Sessions R, Banks L, Collins BM, Berger I,
            Billadeau DD, Burstein E and Cullen PJ.
  TITLE     Retriever is a multiprotein complex for retromer-independent
            endosomal cargo recycling
  JOURNAL   Nat Cell Biol 19 (10), 1214-1225 (2017)
   PUBMED   28892079
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Hu YH, Warnatz HJ, Vanhecke D, Wagner F, Fiebitz A, Thamm S, Kahlem
            P, Lehrach H, Yaspo ML and Janitz M.
  TITLE     Cell array-based intracellular localization screening reveals novel
            functional features of human chromosome 21 proteins
  JOURNAL   BMC Genomics 7, 155 (2006)
   PUBMED   16780588
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC160826.1.
            
            On Mar 16, 2008 this sequence version replaced NM_001108316.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160826.1, SRR8487226.6557.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q11"
     gene            1..2126
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /note="VPS26 endosomal protein sorting factor C"
                     /db_xref="GeneID:360703"
                     /db_xref="RGD:1306879"
     exon            1..77
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     CDS             21..914
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /note="Down syndrome critical region protein 3; Down
                     syndrome critical region 3; Down syndrome critical region
                     gene 3; DSCR3 arrestin fold containing"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 26C"
                     /protein_id="NP_001101786.2"
                     /db_xref="GeneID:360703"
                     /db_xref="RGD:1306879"
                     /translation="MGTTLDIKIKRANKVYHAGEMLSGVAVISSKDSVQHQGVSLTME
                     GTVNLQLSAKSVGVFEAFYNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGS
                     KVLYETYHGVFVNIQYTLRCDMRRSLLAKDLTKTCEFIVHSAPQKGKLTPSPVDFTIT
                     PETLQNVKERASLPKFLIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVET
                     CGCAEGYARDATEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNV
                     VVLLHADHLITENFPLKLCRT"
     exon            78..221
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     exon            222..371
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     exon            372..452
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     exon            453..527
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     exon            528..678
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     exon            679..831
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
     exon            832..2100
                     /gene="Vps26c"
                     /gene_synonym="Dscr3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctttgtgg ataatccgag atggggacta ctctggacat caagattaaa agagcgaata
       61 aagtgtatca cgccggggaa atgctgtctg gtgtggcggt catctcgagc aaggactcag
      121 tccagcacca gggagtctcg ttgacaatgg aagggactgt aaacctccag ctcagtgcca
      181 aaagtgtggg tgtgtttgaa gccttctaca actctgtgaa gccgatccag attatcaaca
      241 gcaccataga tgtgctgaag ccaggaaaga ttcccagtgg caagactgag gttccctttg
      301 agttccctct gcttgtgaaa ggcagcaagg tcctgtatga gacttaccac ggcgtgtttg
      361 tcaacattca gtatactctg cgctgtgaca tgcggcggtc tctgttggcc aaggacctga
      421 ccaagacctg tgaattcatc gttcactctg ctccccagaa ggggaagttg accccaagtc
      481 ctgttgactt cacgatcacc ccggaaacct tgcagaatgt caaagagagg gcttcacttc
      541 ccaaattctt gattagagga catctgaact ccactaactg tgctatcacg cagcccctga
      601 caggagagct ggtggtggaa cactcggatg ctgctatccg gagcatagag cttcagttgg
      661 tccgggtaga gacctgtggg tgtgcagaag gctatgcacg cgatgccaca gagattcaaa
      721 atattcaaat tgctgatggg gatatttgta ggaacctttc tgttccccta tatatggtct
      781 tccccagact gttcacctgt ccaaccctgg agaccaccaa cttcaaagtg gagtttgagg
      841 ttaatgtggt ggtccttctt catgctgacc acctcatcac tgagaacttc ccactgaagc
      901 tctgtcggac gtagtccagc tgcaggaatg ggacagagtg gccacgtgga cattgaccca
      961 gtcatctgct cacagggaca tcactcaggc catctgctca cagggaggca ccacgtcagc
     1021 agcattcatc ttcatgatgt ctgttcattg cctcagagct tgtttcctgc aggtgccctg
     1081 cctctgccct tacgtctgga atgcaacagg atttccttat gtgtgttgca agatcacaga
     1141 aaacattcct gatggctcca gatgtacctg tttcttctta ggttcattaa gcagcttgtc
     1201 tgagtcagat gtggaggcag aagggaaacc ctcttcatct tgcccagact cctaacagca
     1261 aaagagtcag caaccagcaa gctctttgat tgaatctgtg atcccctcca aggagtgaca
     1321 gtgacttcat ctggaaatac ggagcttttc tcttcttgac atcttgataa tgtttcacta
     1381 gaacttctaa attttttagg aactggaaaa gaaaaaccac aaattgtcct tgttctcaca
     1441 gagtgggaat ggtaagtgtg acagtcactg gagtgtttgc agtgtgtagt actggcacac
     1501 acagttaatg ctgccatgtt cccagaatgt actgaaaagc aaggagctgg ttctgaagga
     1561 cagaacgtca cgctgaggaa cgataatagt cttagtctat cccagacccc tggggcacat
     1621 gtgctttgag gcaggggttt tggcctgacg cctgtttccc tttagcctca ctgtaaccca
     1681 cactgtatgg agaggatgtt acagtacttt tctttcgtcc tatcctgctg ctgttctgtt
     1741 ggtccacagt tagtgagcac gctgcacacc agctggcctg ccttcaccgg gtcttggggg
     1801 caggcctaga caaagcaggt cctgactgac agcctcctgg ccactctccc attgttctta
     1861 acagctgagg aactggggca ttactaatgg ggtctcactg gggaaactga gaagacttag
     1921 ctgagtcacc tgacagtggg ttcccagaga atgtattttt gctttgtcat acctatcttt
     1981 aatgtattta aacaatctag tacccaaagt gtgggccata atttctggtg catctgtaag
     2041 gaaaagtcac ctttgattac ataatttttt tatgaataaa gaaagctaaa taatttttaa
     2101 aaaaaaaaaa aaaaaaaaaa aaaaaa
//
