LOCUS       XM_039081426            2269 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus VPS11 core subunit of CORVET and HOPS
            complexes (Vps11), transcript variant X2, mRNA.
ACCESSION   XM_039081426
VERSION     XM_039081426.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2269
                     /gene="Vps11"
                     /note="VPS11 core subunit of CORVET and HOPS complexes;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 35 ESTs, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 108 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:315600"
                     /db_xref="RGD:1308038"
     CDS             15..1961
                     /gene="Vps11"
                     /codon_start=1
                     /product="vacuolar protein sorting-associated protein 11
                     homolog isoform X2"
                     /protein_id="XP_038937354.1"
                     /db_xref="GeneID:315600"
                     /db_xref="RGD:1308038"
                     /translation="MRSEFTSRDSQNSDKQILNIYDLCNKFIAYSAVFEDVVDVLAEW
                     GSLYVLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYG
                     DHLYSKGNHDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADH
                     TTLLLNCYTKLKDSSKLEEFIKTKSESEVHFDVETAIKVLRQAGYYSHALYLAENHAH
                     HEWYLKIQLEDIKNYQEALRYIGKLPFEQAESNMKRYGKILMHHIPEQTTQLLKGLCT
                     DYRPSLEGRGDREFPSCRANSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLL
                     ELRLQNWAHEKDPQAKEKLHAEAISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQ
                     GKLFQQIMHYHMQHEQYRQVIAVCERHGEQEPSLWEQALSYFARKEEDCKEYVAAVLR
                     HIENKSLMPPLLVVQTLAHNSTATLSIIRDYLVQKLQKQSQQIAQDELRVRRYREETT
                     RIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPT
                     CLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIADYFGRGVFNKLTLLTDPP
                     TARLTPSLEAGLQRDLLMHSRRGT"
ORIGIN      
        1 tgctggaggg gccaatgagg tcggagttta ccagcaggga ctcacagaac tctgacaagc
       61 aaattctcaa catctatgac ctgtgcaaca agttcatagc ctacagcgct gtttttgagg
      121 atgtagtgga tgtgctcgct gagtggggct ccctgtacgt gctgaccagg gatgggcggg
      181 tccacgcatt gcaggagaag gacacacaga ccaaactgga gatgctgttt aagaagaatc
      241 tctttgagat ggcaattaac ctggctaaga gtcagcatct ggacagtgat gggctagctc
      301 aaatcttcat gcagtatgga gaccatctct acagcaaagg caaccatgat ggggctgttc
      361 agcagtatat ccgaaccatt gggaagttgg agccgtccta tgtgatccgt aaatttctag
      421 atgcccaacg catccacaac ctgactgcct acctacaaac tctgcatcgg caatctctgg
      481 ctaatgccga tcacaccacc ctgctcctga actgctatac caagctcaag gacagctcga
      541 agctggagga attcatcaag acgaagagcg agagtgaagt ccactttgat gtggagacag
      601 ccatcaaggt cctccggcag gctggctact actcccatgc cctttatctg gctgagaacc
      661 acgcacatca tgagtggtac ttaaagatcc agctagagga cattaagaac tatcaggaag
      721 cccttcggta tatcggcaag ctgccttttg agcaggcaga gagtaacatg aaacgctatg
      781 gcaagatcct catgcaccac ataccagagc agacaaccca gttgctgaaa ggcctctgta
      841 ctgactatcg gcccagtctg gaaggccgag gcgatcggga gtttccaagc tgccgggcca
      901 actccgagga gttcatcccc atctttgcaa acaacccaag agagctgaaa gccttcctgg
      961 agcacatgag cgaagtgcag ccagactcac cccagggcat ctatgacacg ctcctggagc
     1021 tacggctgca gaactgggcc catgagaagg atccacaggc caaggagaaa cttcatgcag
     1081 aggccatctc cctgctgaag agtggccgat tctgtgatgt gtttgacaag gcattggtcc
     1141 tgtgccagat gcatgacttc caggatgggg tcctttacct ctatgagcag gggaagctgt
     1201 tccagcagat catgcattac cacatgcagc acgagcagta tcggcaggtg attgctgtgt
     1261 gtgaacgcca tggggagcag gagccctccc tgtgggagca ggccctcagc tacttcgccc
     1321 gcaaggagga agactgcaag gagtatgtgg cagccgtgct tagacacatc gagaacaaga
     1381 gcctgatgcc acctctcctg gtggtacaga cgctggcaca caactccaca gctactctgt
     1441 ccatcatccg agattacctg gtccaaaaac tgcagaaaca gagccagcag attgcacagg
     1501 atgagcttcg ggtgcggcgg tacagagagg agaccactcg catccgccag gaaatccaag
     1561 agctcaaggc gagtccaaag attttccaga agaccaagtg cagcatctgt aacagtgcct
     1621 tggagctgcc ttcagtccac ttcctgtgtg gccactcctt ccaccaacac tgctttgaga
     1681 gctactcaga aagtgatgct gactgcccca cctgcctccc tgagaatcgg aaggtgatgg
     1741 atatgatccg ggcccaggaa cagaaacgag atctccatga tcaattccag catcagctca
     1801 agtgctcgaa tgacagcttc tccgtgattg cggactactt tggccgaggg gttttcaaca
     1861 agctgactct gctgaccgat ccccctacag ccagactgac ccccagcctg gaggctgggc
     1921 tacagcggga cctgctgatg cactccagga ggggaacgta attaagcagc ccctgggaaa
     1981 gcctgcaacc ctgggctcta aacaaggatg ggcctgaggg acatccggta gcagacatga
     2041 ccacagttcc agacctcgac actcaagaag gggatctgct tttcctgcct ccctttgcca
     2101 gcctgctatc cctcctgctg accagcaata tagattattc cacaccagtg aggagggcac
     2161 ctcggcaacc tctctgtgga caatagctgc tttatcctct gttcaagggc accaggctgt
     2221 gcttgggtcc ttgctcccag agcctataaa taaaagagta taataataa
//
