LOCUS       NM_001413612             615 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus V-set pre-B cell surrogate light chain 3
            (Vpreb3), transcript variant 1, mRNA.
ACCESSION   NM_001413612
VERSION     NM_001413612.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CO556448.1, CO566731.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JAXUCZ010000020.1  12718125-12718226   c
            103-615             JAXUCZ010000020.1  12716862-12717374   c
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..615
                     /gene="Vpreb3"
                     /note="V-set pre-B cell surrogate light chain 3"
                     /db_xref="GeneID:365550"
                     /db_xref="RGD:1306807"
     exon            1..102
                     /gene="Vpreb3"
                     /inference="alignment:Splign:2.1.0"
     CDS             51..419
                     /gene="Vpreb3"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; pre-B lymphocyte protein 3; pre-B lymphocyte
                     gene 3; pre-B lymphocyte 3; pre-B lymphocyte protein
                     3-like"
                     /codon_start=1
                     /product="pre-B lymphocyte protein 3 isoform 1 precursor"
                     /protein_id="NP_001400541.1"
                     /db_xref="GeneID:365550"
                     /db_xref="RGD:1306807"
                     /translation="MACPGYRPFLLVGAFLSVFQPTLSQPDALLVFPGQEAQLSCTIN
                     SQQASVEDTGVSWYQQQPGGSPHFLYYHSKEEDYRPADIPDRFSATMDVVHNACVLTI
                     SPVLPEDDADYFCSIAHFEP"
     exon            103..615
                     /gene="Vpreb3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagcacagt actgcagaac aactctagga aggtcttttc acttctggcc atggcctgtc
       61 ctggttaccg acctttcctt cttgtgggag ccttcttgtc agtctttcag ccaaccctga
      121 gccagcctga tgcactgctg gtcttcccag gccaagaagc tcaactgagc tgcacgatca
      181 attcccagca ggccagcgtc gaagacactg gggtatcttg gtatcagcag cagccaggag
      241 gctctcctca ttttctctac taccactcaa aagaggaaga ctatcgaccg gccgacatcc
      301 ctgacagatt ctcagcgacg atggacgtgg tccacaatgc ctgtgtactc accatcagcc
      361 ccgtgctgcc agaggacgac gctgactact tctgttccat tgcccacttt gaaccctaag
      421 ctgggaggcc cctgaccttg ggcctcctct ttttctctca gtcttgcttt ctttcctctg
      481 caaaaagagt taataacatt cgacaggtca cagttctgat gaccgtgata ttctgggtaa
      541 aaaaaaaaaa aagtcaaatc ggaggacgtg ggggttggga ttctaatgat tgttgtctac
      601 ggcggaaaca cctga
//
