LOCUS       NM_001108630            2883 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus VOPP1 WW domain binding protein (Vopp1), mRNA.
ACCESSION   NM_001108630 XM_001064110 XM_342698
VERSION     NM_001108630.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Baras,A. and Moskaluk,C.A.
  TITLE     Intracellular localization of GASP/ECOP/VOPP1
  JOURNAL   J Mol Histol 41 (2-3), 153-164 (2010)
   PUBMED   20571887
REFERENCE   2  (bases 1 to 2883)
  AUTHORS   Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O.,
            Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H.
            and Sugano,S.
  TITLE     Large-scale identification and characterization of human genes that
            activate NF-kappaB and MAPK signaling pathways
  JOURNAL   Oncogene 22 (21), 3307-3318 (2003)
   PUBMED   12761501
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474011.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001064110.1, XM_342698.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168709.1, CO394972.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2883
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /note="VOPP1 WW domain binding protein"
                     /db_xref="GeneID:362374"
                     /db_xref="RGD:1306494"
     exon            1..209
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /inference="alignment:Splign:2.1.0"
     CDS             156..674
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /note="EGFR-coamplified and overexpressed protein;
                     vesicular, overexpressed in cancer, prosurvival protein 1;
                     VOPP1, WBP1/VOPP1 family member; WW domain binding protein
                     VOPP1"
                     /codon_start=1
                     /product="WW domain binding protein VOPP1 precursor"
                     /protein_id="NP_001102100.1"
                     /db_xref="GeneID:362374"
                     /db_xref="RGD:1306494"
                     /translation="MARPLGRVAALLLGLLMECTEAKKHCWYFEGLYPTYYICRSYED
                     CCGSRCCVRALSIQRLWYFWFLLMMGVLFCCGAGFFIRRRMYPPPLIEEPTFNVSYTR
                     QPPNPAPGAQQMGPPYYTDPGGPGMNPVGNTMAMAFQVQPNSPHGGTTYPPPPSYCNT
                     PPPPYEQVVKDK"
     exon            210..268
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /inference="alignment:Splign:2.1.0"
     exon            269..346
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /inference="alignment:Splign:2.1.0"
     exon            347..483
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /inference="alignment:Splign:2.1.0"
     exon            484..2883
                     /gene="Vopp1"
                     /gene_synonym="Ecop; RGD1306494"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgggtcgg gagcgcgcgg cgagggtggc ttggcacgtc ctccagctct gccggcctgc
       61 ggcgcgtcct tctgccggcg tcggctcata tccccggagt ccacccgccc gccccgggct
      121 gtgcagcccg gcttcaggcg gtcctcgccg gagccatggc ccgcccgctc ggcagagtgg
      181 cagcgctgct gctagggctg ctaatggagt gcacagaggc caaaaaacat tgctggtatt
      241 ttgaaggact ctatcccaca tactatatat gccgttccta tgaagactgc tgtggctcca
      301 ggtgctgtgt gcgggccctc tccatacaga ggctgtggta tttttggttc ctgctgatga
      361 tgggtgtgct gttctgttgt ggagctggct tcttcatccg ccggcgcatg tatccaccac
      421 cgctcattga ggagcccaca ttcaacgtgt cctataccag gcagccacca aatcctgctc
      481 caggagcaca gcaaatgggg ccgccatatt acaccgaccc tggaggacct ggaatgaatc
      541 ctgttggcaa taccatggct atggctttcc aggtccagcc caattcaccc cacggaggca
      601 caacttaccc acctcctccc tcctactgca acacgccccc acccccctat gaacaggtgg
      661 tgaaggacaa gtagcaagat ggtacatcga aggcaaagag gatggacagg cccttttgta
      721 ttcctctcca tcctcactga ttcttgctaa tagagtggtc caagggcaca cttctctttg
      781 atattttcaa agcaagccca gctctctttc aagttttttg tggaggacat ttgaatccac
      841 actgtctcct ctgttgcttc tgtttctgat gtagtttgtg ctctctgaga gagtgtggca
      901 gcagtccctg agggccgata ttcctagggt ggcatgggta gatcctcgag agagaggcta
      961 agagggaagg aaggcatagc ctatgtgtca gggagcagat aaagcggtca ggctgagcta
     1021 agactcacat gtgcagtagc tggcagtgaa gtcccaagag acactatccc agccccttcc
     1081 cctaatagaa gctgtgggga tgtgctgctg atgctcttgg tgtccactca cagtttgaaa
     1141 ataggctttc ctctgcagga ataagaaaga cccaagtgca tattgcttcc actaaaaaac
     1201 gagggtcgga atcaggcctc agttggacat gtgtagttaa ataaagacca gtagagaggg
     1261 caagtcttta agttagggaa aattctctaa atggagacat tacattttat gaatcacagt
     1321 ctggcttttc ttttagtgca tgtattaaag tgagggcgtg ttctttgaga tcatatggag
     1381 aatggaaact ggggggatct ctgctcaaag ggcttcaaca cccttttctt aagtagttct
     1441 ggtgatgggc tttatggacc ctatagagct gagggacaca ttaggctggg tagttacatt
     1501 gacccctgga gagggggaga gaacagccaa agagacccag caaagcaagc ccagcattgc
     1561 tgagtaaaag ctagggttat atgtgattcc agcagagatg tgctggcctc agaaaagggg
     1621 atgtttgtgg atagaacagt gaaaacctac ttagttgcac agaccacata atcaaaagta
     1681 gagaaagaag tgtagttaga gatgctgttt cctgggtgag aatcagagct catccataga
     1741 tttacaagta gtagcgggag ttgttagcag tgccgagttc tgttcccttt tatagttagt
     1801 catgttgatg tgtatttaaa cccaggttga gaccttgtgt actaagagca agaaagtata
     1861 gctaagatgc ctagattatt tatgtgtagt atggtgggga gtgggctgca aggaagggga
     1921 ctgactgaaa atgaactaac cagagccatt tgataaaccg ttacttgttt aaccgggcat
     1981 ctaaacgtgt ctcttgagtg gacactgagt attctttatc atccacaaga ccaggaggca
     2041 aggtgtcatt ctccgttggg atatttatag gaggcagagg tttaggaact gaaagtagtt
     2101 gtgtgggctt agtttaagga cagaaggctt ggagacttgc agactgtttc ataggaaatt
     2161 gcagggaaga aatggatatc tttaaagaca gtttgcggat gcagatgctg ctgccaatca
     2221 ttgagcaccc ttgtgtctgg tttcctgtca ctggatccat tacccttcca tgcttgggtc
     2281 cttgttttac ataagacgac aaagcacaat gtctgctgtt tacaatcaag acgactacac
     2341 ggtccaaaca tttcctctct cctctatcac ttgtggcttt aacttcaatt tcttctgttc
     2401 ctttttaaaa ccaagaagca cagtcagagc tgcccctggg attacaccag ggaacggctg
     2461 atcaaggcac tcggtgtccg tgactaaatc taatcttttt gatagcaaat ccttttgaga
     2521 aactgaacga ctgatagggc tcagcaattt tatactccaa tgtctgttta agatacattt
     2581 tgttcccatc gagcccgcat tggaattcct tcagacgtaa atactgacga tgcctatgga
     2641 aactgcacct ctaggggatg tttcctagca ttcttgtttt cttctgtttg gtgagtaagg
     2701 ctcacctctt ccagcagctc cacttgtgtg ctgaggtcct gtacagccgg tgcttggaga
     2761 cagacctgaa gcagacttgt gcatgctctc ttttggcaac acttggctga cgtttcttct
     2821 ttgttctctt ttgatagagt cctgtttcct atgtatttaa aaaaaataaa agtgaattta
     2881 gtc
//
