LOCUS       NM_001099659            2976 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 78 (Vom2r78), mRNA.
ACCESSION   NM_001099659 XM_001055497 XM_039085831
VERSION     NM_001099659.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Feb 25, 2022 this sequence version replaced
            XM_039085831.1, NM_001099659.1.
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-489               JAXUCZ010000001.1  81026340-81026828   c
            490-772             JAXUCZ010000001.1  81022086-81022368   c
            773-1585            JAXUCZ010000001.1  80998689-80999501   c
            1586-1813           JAXUCZ010000001.1  80985950-80986177   c
            1814-1937           JAXUCZ010000001.1  80983410-80983533   c
            1938-2976           JAXUCZ010000001.1  80979955-80980993   c
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2976
                     /gene="Vom2r78"
                     /note="vomeronasal 2 receptor, 78"
                     /db_xref="GeneID:367480"
                     /db_xref="RGD:1588463"
     exon            1..489
                     /gene="Vom2r78"
                     /inference="alignment:Splign:2.1.0"
     CDS             293..2842
                     /gene="Vom2r78"
                     /codon_start=1
                     /product="vomeronasal 2 receptor 78"
                     /protein_id="NP_001093129.2"
                     /db_xref="GeneID:367480"
                     /db_xref="RGD:1588463"
                     /translation="MLILMVVFFLLHYPLLMANFIDPWCFWRTNLNEVKEKDLDINCA
                     FILGAVQLPMEKDYFNETLNVLEKTKTNKYALALAFSMEEINRNPDLLPNMSLVIKHT
                     LSYCDGNTALHIFKEKFYRPLPNYVCNEETMCSFMLTGLNWISSIKLFRNLEIFSFPR
                     FLQISYGPFHSIFSDNEQFPYLYQMTPKDTSLALAIISFLLYFNWNWVGLVISDNDEG
                     NQFLSELKKETQNKEICFAFVNMMSIHERSFCQKTEMYYNQIVMSSTNIIIIYGKTYS
                     IIELSVRMWESPVIQRIWVTKSELDIPTSKRDLTLGTFYGTLTFLHHHGEIPGFTNFV
                     ETWDHLRSRDLNLLIPEWKYFSYDASGSNCKILRNYSSNVSLEWITEQKFHMAFNDYS
                     HSIYNAVYAMAHALHENNLQEVDNKEIRNGKGASTHCLKVNSFLKKTHFTNSHGDRVI
                     MKHRERVQEDYDIVHIQNFSQHLRIKMKIGKFSPYFAHGGLFHLYEDMIQLVTGSRKM
                     PSSVCSADCSPGFRKTWKEGMAACCFICSLCPENEISNETNMDQCVNCPEYQYANTEK
                     NKCIQKDVIFLSYEDLLGMALALIAFCLSAFTAVVLWVFVKHHDTPIVKANNRILSYI
                     LIMSLMFCFLCSFFFIGHPNRGTCILQQITFGIVFTVAVSTVLAKTITVILAFKLRDP
                     GRSLRNFLVSGAPNYIIPICSLLQCILCAIWLAVSPPFVDIDEHSEHGHIMIVCNKGS
                     IMAFYCVLGYLACLTLGSFTTAFLAKNLPDTFNEAKFLTFSMLVFCSVWVTFLPVYHS
                     TRGRVMVAVEIFSILASSAGMLGSIFAPKIYIILMKPERNCIQKFREKSYF"
     exon            490..772
                     /gene="Vom2r78"
                     /inference="alignment:Splign:2.1.0"
     exon            773..1585
                     /gene="Vom2r78"
                     /inference="alignment:Splign:2.1.0"
     exon            1586..1813
                     /gene="Vom2r78"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..1937
                     /gene="Vom2r78"
                     /inference="alignment:Splign:2.1.0"
     exon            1938..2976
                     /gene="Vom2r78"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttctttct gcctattaat aaacatgagt gatatcatgg agcctgagaa agaataattc
       61 tccaaagtat ttaccaatct gtgttacatg agctgtggtc acctgttgca gagccccagg
      121 gaagaaagtg cttaaccttc ctccagggct cagaagcaat ctggaaaaac aaatgaatca
      181 tgaatatgca acctcttctt tatacagagt aataaaagat catagaaatt tgatgttctt
      241 atatgcatgg tactttccaa ttcacactgc ccaggtttaa ggcagaaaga atatgttaat
      301 tttgatggta gtatttttcc ttctccacta tccacttctc atggccaatt tcattgatcc
      361 ctggtgcttt tggagaacaa atttgaatga agtcaaggaa aaagacttgg atataaattg
      421 tgccttcatc cttggagcag ttcagttgcc tatggagaaa gattatttca atgagacttt
      481 gaatgtccta gaaaaaacta aaaccaacaa atatgccttg gcattagcct tttcaatgga
      541 ggaaatcaac aggaaccctg atcttttacc aaacatgtct ttggttataa aacatacttt
      601 gagctattgt gatggaaata ctgcactcca catatttaaa gaaaaatttt ataggccttt
      661 acctaattat gtctgtaatg aagagactat gtgttcattt atgcttacag gactgaattg
      721 gatatcatct ataaaacttt ttagaaattt ggaaatcttc tcatttccac gtttccttca
      781 gatttcctat ggacctttcc attccatctt cagtgataat gaacaatttc catatctcta
      841 tcagatgacc ccaaaggaca catcactagc attggcaatc atctccttct tactttactt
      901 caactggaac tgggttgggc ttgtcatctc tgataatgac gaaggcaatc aatttctctc
      961 agagttgaaa aaagagaccc aaaacaagga aatttgcttt gcctttgtta acatgatgtc
     1021 aatccatgag cgttcattct gtcaaaaaac tgaaatgtac tacaaccaaa ttgtgatgtc
     1081 atccacaaat attattatca tttatgggaa gacatacagt atcattgaat tgagcgtcag
     1141 aatgtgggaa tctccagtta tacagaggat ttgggtcacg aaatcagagt tggatatccc
     1201 gacaagtaag agagacttaa ctcttggcac attctatggg actctgacat ttctacacca
     1261 ccatggtgag atacctggat ttacaaattt tgtcgagaca tgggaccatc tcagaagcag
     1321 agatttaaat ctattaatac cagagtggaa gtactttagc tatgatgcct caggatctaa
     1381 ctgtaaaata ttgagaaact attcatccaa tgtctcattg gaatggataa cagaacagaa
     1441 gtttcacatg gcctttaatg attatagtca tagcatatat aatgctgtgt atgccatggc
     1501 ccatgccctc catgagaata atctgcaaga ggttgataat aaggaaataa gaaatgggaa
     1561 aggagcaagt actcactgct tgaaggtaaa ctcatttctc aaaaagaccc actttactaa
     1621 ttctcatgga gacagagtga ttatgaaaca cagagagaga gtacaggaag actatgacat
     1681 tgttcacatt cagaatttct cacaacacct tcggattaag atgaagatag gaaagttcag
     1741 cccatatttt gcacatggtg gactctttca cttatatgaa gacatgattc agttggtcac
     1801 aggaagtaga aagatgccat cctctgtgtg cagtgcagat tgtagtcctg gattcagaaa
     1861 aacctggaag gagggaatgg cagcctgctg ttttatttgt agcctgtgcc ctgaaaatga
     1921 aatttctaat gagacaaata tggatcaatg tgtgaactgt ccagaatacc agtatgccaa
     1981 cacagaaaaa aacaaatgca ttcagaaaga cgtgattttt ctaagctatg aagacctctt
     2041 gggaatggct cttgccttaa ttgccttctg tttgtctgca ttcacagctg tggtactttg
     2101 ggtctttgtg aagcaccatg acactcctat tgtgaaggcc aataacagaa tcctcagcta
     2161 catattaatc atgtcactaa tgttctgttt tctctgctcc tttttcttca ttggccatcc
     2221 taacagaggt acctgtatct tacagcaaat cacatttggt attgtattca ctgtggctgt
     2281 ttccacagtt ctggccaaaa caatcactgt cattcttgct ttcaaactca gagacccagg
     2341 gagaagttta agaaacttcc tggtatctgg tgcacccaac tacattattc ccatatgttc
     2401 cttattgcaa tgtattctgt gtgcaatttg gctagcagtt tctcctccct ttgttgatat
     2461 tgatgaacat tctgaacatg gacacataat gattgtgtgc aacaagggct ccattatggc
     2521 attctactgt gtcctaggat acttggcctg cctgaccctt ggaagcttca ctacggcttt
     2581 cttggcaaag aatctgccag acacattcaa cgaagccaag ttcttgacct tcagcatgct
     2641 agtgttctgc agtgtctggg tcacctttct ccctgtgtac catagcacca ggggcagggt
     2701 tatggttgct gttgagatct tctccatctt ggcatccagt gcaggaatgc ttggaagcat
     2761 ctttgcaccc aaaatctaca tcattttaat gaaaccagag agaaattgta tccaaaagtt
     2821 cagggagaaa tcatatttct aaacaaatat ttcaggattc agtcaaacat taagttgata
     2881 tatacccacc aaatatttgg ttatagtgca tgtatacagt tttagaatca gtcttactgg
     2941 ttcctctatt gacgtctaga agtatcatat ctacca
//
