LOCUS       XM_039092604            6815 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus vomeronasal 2 receptor, 66 (Vom2r66),
            transcript variant X1, mRNA.
ACCESSION   XM_039092604
VERSION     XM_039092604.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092604.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6815
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6815
                     /gene="Vom2r66"
                     /note="vomeronasal 2 receptor, 66; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:305112"
                     /db_xref="RGD:1566389"
     CDS             2900..5407
                     /gene="Vom2r66"
                     /codon_start=1
                     /product="vomeronasal type-2 receptor 116 isoform X1"
                     /protein_id="XP_038948532.1"
                     /db_xref="GeneID:305112"
                     /db_xref="RGD:1566389"
                     /translation="MFLLMVVFFLLNIPFLLANFKDPRCFWRINLNEVKDEALGMTCS
                     FILGTVQKPMDKDYFNQTLNVLKTTTNHTFALALAFAVDEINSNPDLLPNMSLIIKYN
                     LGHCDGQTPTIPPDLFYPNNHQPFPNYFCNEEIMCLVLLTGPHWQFLQLSYGPFYSIF
                     SDNEQYPYLYQMGPKDSSLALAMVSFILYFKWNWVGLFISDDDQGNQFLSELKKESQT
                     KDICFAFVNMVSISDVSYYHKTEMYYNFVMSSTNVIIIYGETNSIIELSFTMWSSPVK
                     QRIWVTTKQFDFPTSQRDLTHSTFYGTLTFLHHYGEIPGFKNFVQTRYHLRSTDLYLR
                     IPEWKYFNYEASASNCKVLRNYLSNVSLEWLMEQNFDMSFSDYSHNIYNAVYAIAYAL
                     HEKNLQEVENQAKNNGKGENTHCLKLNSFLRKTHFTNPLGNRVIMKQREIVHEDYDIF
                     HMWNFSQRLGIKVKIGQFSPYFPQGQQLHLYVDMTELATGSRKMASSVCSADCHPGFR
                     RIWREEMAACCFVCSPCPENEISNETNMDQCVNCPEYQYANTEKNKCIQKGVIFLSYE
                     DPLGMALALIAFCFSAFTAVVLWVFVKYHDTPIVKANNRILSYLLIVSLMFCFLCSFF
                     FIGYPNRATCILQQITFGIVFTVAISTVLAKTITVVLAFKVTDPGRRLRNFLVSGTPN
                     YIIPICSLLQCFLCVIWLAIAPPFVDIDEHSEHGHIIIVCNKGSVTAFYCVLGYLACL
                     ALGSFTIAFLAKNLPDTFNEAKLLTFSMLVFCAVWVTFLPVYHSTKGKVMVAVEIFSI
                     LASSAGMLGCIFAPKVYIILMRPDRNSIHKIREKSYF"
ORIGIN      
        1 accgggaaag tgagtaacac tcgaaatgtg aataagaaat actcaagtta ataaaaaaaa
       61 atggtcttgg tggaaaaaat tgacatattt tgatgctggt agaaaaaata tagatgaaaa
      121 tagatttgta atttggaaat tgagcatgca cacagaaagt catgaaggga aaagaaggtt
      181 tattgaaatg agaaatgaga tactagcaag gtcggcaaca gataatggtg atgtaggtgc
      241 tgaaaccagc aatgtacttg ctacatttgt gtcagtgtgc cataatgaaa tccaaattaa
      301 aagaaataat aattattaat gacaaaacca tggataaatc tgtactactg gaaatttcat
      361 tcgcactttt ttttggttat ttgatttata taagttccaa tgttatccct ctcccaggtt
      421 tccactcgac aaacccctat accattcccc ctccctactg cttcaatgat ggtatgcccc
      481 catccaccta ctcactactg cctcacagcc ctagcattct cctatactgg ggcattgagc
      541 cttcacaaga tcaagatcct cccctcccac tggttgtaga taaggttatc tttcactaca
      601 tatgcagaca aagcaattgg tccctccatg tgcactctgg ttggctgttt agtctgtggg
      661 agctctgggc tgtctggttg gttgatatca ttgttcttcc tatggagttg caaacccctt
      721 cagctccttc ctccttcccc taactcctcc attggggtcc ctgtgttctg tctgatggtt
      781 ggctgcaaac attcacatat gtattggtca agcactgaca cagcctctca agggacagct
      841 atattaggct cttgtcagca agtacttcta gggaaaaagc aatagtaact gcctatgaca
      901 ggaattccca ggaggggcag tttctggatg gcctttcctt ccctctctcc tccattcttt
      961 gttcctgtat ttcctttaga caggagcaat tctgggctaa aatttttgac atgggtgggt
     1021 ggtccctcac tcttgaaaga caactttata ttcttatgaa agaattcttt tttttttttt
     1081 tggttctttt tttcggagct ggggaccgaa cccagggcct tgagcctcct aggcaagtgc
     1141 cctaccactg agctaaatcc ccaaccccat gaaagaattc tttattcaca tttgtataga
     1201 tacaggtctc agcactctag gacagccttt aacaaccaga aatcatgtat atgaaaaaca
     1261 ctgactttga agtgttcagc aatatccagt gcaaaacact aaaattatat gtgtcattaa
     1321 aacacataat ggggcatatc ataatccaaa ccaatgagtt gcctacatat gctctgcttt
     1381 cttatagtcc aaattcactg aaagaggttc atgagtgtat aatcctcaag aaactctcca
     1441 atggtcagtg ttgattctag aatgctagca aaaatagatg ggtagaaaga tttttttaat
     1501 caaagtttac acattagaac acagtgatgc ttcacagtca ctatttaatt ctaagatact
     1561 aagaagatat ttctaaacaa cacttcctca cccccagtac tgtagtgtaa aatgagaaaa
     1621 acaaagataa tgtagaatat ttgggtcagc catattatta aattgaaata tctgaggatc
     1681 agggaggaag atgatcattt ggaattcaaa tattaagaca cctttcacat tgttattgat
     1741 tgtttgaaaa gtagagttcc agcaactgaa ccaccaacca gagagcacac acagggactc
     1801 acagttccat ctggatatgt agcagaggtc tttcttatct agcatcacgg gaaggggtgc
     1861 tgcttggtat tgtagaggct tgatgaccca gggtaggggg atgatagggt gctgagcagg
     1921 agtgggtggg tggatggggt ataccctcat agaggtatgg agaggatgga gggacaatga
     1981 tatcaaccaa ccagaccccc ccccagagct cctatggact aaacagccaa ccaaagagta
     2041 cacatgaagg aaccaattgt tttgtttgtg atggaagcaa ctgggaagaa tcataaaatg
     2101 tgagatgtaa ataaataaaa taaccaataa aaagagagaa aaaaagaaag aaagcacaca
     2161 gcatggcact gtgtctggat cttgttgaac ctttaaaact caatctttgt catagaaatt
     2221 aagtgtggat ctgtgaagaa ctgtataatt ttggatagaa atggattaaa tatgtttctg
     2281 atttagtctg tttcttgatt ctcaagacaa tggaagcaca ggctttgttt agataatctg
     2341 ttcatatcac tgctgtgaca tagttcatac tgtgcatgat ctgtggatct caatgagtat
     2401 atacatgaga cttcctttct ctgccttgaa ctttgtaata caatgtcttg tgtttcccta
     2461 gtagctccaa ttgttgtatt actggatgtc tcactgtgaa acgtctaata aaatccagta
     2521 acatcatttc aaattgtgct cacataatca tgttgttaaa aatttccaag aaccaaattt
     2581 gaacacaagg gcttttttcc aggtgctcct aaacatgagg atatcatggc acctgagaat
     2641 aaattatcct ccaaagtatt tacctacctg tttttattac atgtgctgtg gacacctgtg
     2701 gcagggctcc aggggaaaaa atgtttgttt cctccagagc tcaggagcaa tctgaaaaat
     2761 aaaaaatcaa aaataaaaaa acaatgaatc atgattaagc aacaaacctc tcctttgccc
     2821 agtgaaataa aagttggtac aaatttgatg tgcatggcac ttcacaatcc actctgtcag
     2881 ggtttaagga aggaaaaaca tgttccttct gatggtagta ttcttccttc ttaacattcc
     2941 atttctcctg gcaaatttca aggatcccag atgcttttgg agaataaatt tgaatgaagt
     3001 caaggatgaa gcccttggga tgacttgttc cttcatcctc ggaacagttc agaagcctat
     3061 ggacaaagat tatttcaacc agactctgaa tgtcctaaaa acaactacaa accacacatt
     3121 tgctttggca ttggcctttg cagtggatga aatcaacagt aatcctgatc ttttaccaaa
     3181 tatgtctctg attataaaat acaatttggg ccattgtgat ggacaaacac caacaattcc
     3241 acccgattta ttttacccaa ataatcatca gcctttccct aattatttct gtaatgaaga
     3301 gattatgtgt ttggttctgc ttacaggacc acactggcag ttccttcagc tttcctatgg
     3361 acctttctac tccatcttca gtgataatga acaatatcca tatctctatc agatgggccc
     3421 aaaggactca tcactagcat tggcaatggt ctccttcata ctttacttca agtggaactg
     3481 ggttggacta tttatctcag atgatgatca aggcaatcaa tttctctcag agttgaaaaa
     3541 agagagccaa accaaggaca tttgctttgc ctttgtgaac atggtatcaa tcagtgatgt
     3601 ttcatactat cataaaactg aaatgtacta caattttgtg atgtcatcca caaatgttat
     3661 tatcatttat ggggaaacaa acagtattat tgaattaagc ttcacaatgt ggtcatctcc
     3721 agttaaacag agaatatggg tcaccacaaa acaatttgat ttccctacca gccagagaga
     3781 cttaactcat agcacattct atggaaccct tacatttcta caccactatg gtgagattcc
     3841 tggctttaaa aattttgtac agacacggta ccatctcaga agcacagatt tatatctcag
     3901 aataccagag tggaagtatt ttaactatga agcctcagca tctaactgta aagtactgag
     3961 aaactattta tccaatgtct cactggaatg gctaatggaa cagaactttg acatgtcctt
     4021 tagtgattat agtcacaaca tatacaatgc tgtgtatgcc attgcctatg cactccatga
     4081 gaagaatctg caagaagttg aaaatcaagc aaaaaacaat gggaaaggag aaaatactca
     4141 ctgcttgaag ctaaactcat ttctgagaaa gacccacttc actaatcctc ttgggaacag
     4201 agtgattatg aaacagagag aaatagtgca tgaagactat gacatttttc acatgtggaa
     4261 tttctcacaa cgccttggga ttaaggtgaa gataggacaa ttcagcccat attttccaca
     4321 gggtcaacag ttacacttat atgtagacat gactgaattg gctacaggaa gtagaaagat
     4381 ggcatcctct gtgtgcagtg cagattgtca tcctggattc agaagaatct ggagggagga
     4441 aatggcagcc tgctgttttg tttgcagccc ctgccctgaa aatgaaattt ctaatgagac
     4501 aaatatggat cagtgtgtga attgtccaga ataccagtat gccaacacag aaaagaacaa
     4561 atgcattcag aaaggtgtga tctttctaag ctatgaagac cccttgggga tggctcttgc
     4621 cttaatcgca ttctgtttct ctgcattcac agcagtggta ctttgggtct ttgtgaagta
     4681 ccatgacact cctattgtaa aggccaataa cagaatcctc agctacctat taatcgtgtc
     4741 actcatgttc tgttttctgt gctccttttt cttcattggc tatcctaaca gagcaacctg
     4801 tatcttacag caaatcacat ttggaattgt ctttactgtg gctatttcca cagttctggc
     4861 caaaacaatc actgtggttc tggctttcaa agtcacagac ccaggaagac gattaagaaa
     4921 ctttttggta tcggggacac ccaactacat tatccccata tgttccctat tgcaatgttt
     4981 tctgtgtgta atctggctag caattgctcc tccctttgtc gatattgatg aacactctga
     5041 gcatggccac atcatcattg tgtgtaacaa gggctccgtt actgcattct actgtgtcct
     5101 gggatacttg gcctgcctgg cccttggaag cttcactata gctttcttgg caaagaacct
     5161 gcctgacaca ttcaacgaag ccaagttgtt gaccttcagc atgctagtgt tctgcgctgt
     5221 ctgggtcacc ttcctccctg tctaccatag caccaagggc aaggtcatgg ttgctgtaga
     5281 gatcttctcc atcttggcat ccagtgcagg gatgctggga tgcatctttg cacccaaagt
     5341 ttacatcatt ttaatgagac cagacagaaa ttcgatccac aaaatcaggg agaaatcata
     5401 tttctgagca aatatttcag gaattctgtc aaatgtaaag ttgttacgta cactccaaat
     5461 atttagctac agagcatgaa ttttagaatt tagttttaga atcactcttg ctgatttctc
     5521 tagctatgtt tagaagtacc atatctactg atcttgcata cattgtccat aaaatcttgc
     5581 aatcattcat ttgcttagta tcccctggga gaactataat tttcaaataa gtagtacaac
     5641 tttattcata attttgcttt catgaggctt tccccctgat aacttagagt aaatttgata
     5701 aggcagttga atctataacc ttgtatagaa agtgagttct aggatagaca gggattatac
     5761 ataaaaacaa actaactaaa aatcaacaaa gatgaaatca gaacacattt tcttatttcc
     5821 agtaggagca catgcaacag atactgtctt tttttcagct gctcttcaag atactggcca
     5881 atagtctaag ctgaaaatgt tctttatcta ctctcaaata caaaaatatt atatacaaca
     5941 atgaacagaa tccagggact cctgtggttg tgttagggaa tagtttgaag atactgagga
     6001 gggtgaccca taggaataca aacagtctca actaacctgg acaacaaaga cactgagcca
     6061 ctaacaagtc agcatactcc agctgttata aggcccccaa cacatatgta acacaggatt
     6121 gcctgatcca gcctcagcaa gagaatacac acctaaccac aaagagactc ccccaaggga
     6181 ttggggaggt ctggggtttg gagagttgca gattgcccct tgataactgg caggaggtat
     6241 tggatgagaa taagtcaggg ggaagactag gaagggaata atgatggaac tgtaaaaaac
     6301 aatattaagg aataaaaaaa caaaacaaag gaggcttgta gatatagcaa catgatatta
     6361 tattgtaatt atggaaagga ttggtaaaac tgatattggt ttgtacctaa tttttctcag
     6421 agttgttctt ggtgtgcagt aatgatttga gtcctggact cacaaaattc tagaaggatc
     6481 gaatgggggc cagatggttt cattgtgctg cttcctagaa aatgaatttt caaaaggaaa
     6541 ttgaatgttt gcagttgcac taatccttca cattcatcaa ttctcctccc acaatgggag
     6601 gctgaatggg tgtataatgc atcagaatta tcaaaaaatt acttctctga gttactcttc
     6661 atagaaatat aatcattagt aatgtccctt taaagaacac attctgcttt aacagtcaca
     6721 ttttactgta tcctgcaaaa ctctcaatta acacagatgg agaaaggaag atattccatg
     6781 acaaaagcca atttacacaa tatctttcta caaat
//
