LOCUS       NM_001099459            2526 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 6 (Vom2r6), mRNA.
ACCESSION   NM_001099459 XM_001067478 XM_218121
VERSION     NM_001099459.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On Feb 3, 2021 this sequence version replaced NM_001099459.2.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMN17050755
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on single protein-coding
                                         transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-206               JAXUCZ010000001.1  3025923-3026128
            207-489             JAXUCZ010000001.1  3028690-3028972
            490-1293            JAXUCZ010000001.1  3029373-3030176
            1294-1518           JAXUCZ010000001.1  3031024-3031248
            1519-1642           JAXUCZ010000001.1  3032423-3032546
            1643-2526           JAXUCZ010000001.1  3033710-3034593
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..2526
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /note="vomeronasal 2 receptor, 6"
                     /db_xref="GeneID:308257"
                     /db_xref="RGD:1562697"
     CDS             1..2526
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /codon_start=1
                     /product="vomeronasal 2 receptor 6 precursor"
                     /protein_id="NP_001092929.3"
                     /db_xref="GeneID:308257"
                     /db_xref="RGD:1562697"
                     /translation="MKKLCAFTIAFFSLKFCLILCSLTEPNCFWRIKKSEDNDGDLRS
                     DCGFVLFTDEDPIEEDFYNRIINFRIPGRKYEFFLVLFFATDEINKNPNLLSNMSLSF
                     SIIVGLCEDTLGVLEKAYSHKNNNFELINYYCRMKQCCDVELTGPSWTTSLKLSIYSR
                     KPKIFFGSFNPNLSDHDQFPYIYQIAAKDTYLFHGMVSLMFHFGWTWIGLVISDDDQG
                     IQFLSDLREEIQRHEICLAFVNMIPETMQIFKTRLKIYDQQLMTSSAKVVVIYGEMNS
                     TLELSFRRWAYLGAQRIWITTSQWDVTTHKKDFSLDFFHGTVTFAHHHNDIAVFRNFM
                     QTINTSKYPIDISQSMLHWNHFNCSISKNNNKMDCLTFNNSLEWLAQHTFDMALSDEG
                     YNLYNAVYAVAHTYHELIFQQVESQKMEEPKGICADCQQVASLLKTRVFTNPVGELVN
                     MNHKENQCAKYDIFMIWNFPQGLGLKVKIGSYFPCLPQSQQLHISENWEWVTGETVVP
                     SSVCSVTCTAGFRKIHQKQTADCCFDCVQCQENEIANDTDMEQCVRCPDDSYANLEQT
                     QCLQRAVTFLAYEDPLGMALGCMALSFSAITTLVLVTFVKYRDTPIVKANNRILSYIL
                     LISLVFCFLCSLLFIGHPNQATCILQQTTFAIFFTVAISTVLAKTITVVTAFKLTTPG
                     RRIRRMMIKGATNLLIPICTLIQLVLCGIWLVTSPPFIDRDTQSEHGKIVIICNKGSD
                     IAFHFVLGYLGSLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFYSVWITFLPVYHST
                     RGKVMVVVEVFSILASCAGLLGCIFVQKCYILLFRTDLNFLQK"
     exon            1..206
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /inference="alignment:Splign:2.1.0"
     exon            207..489
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /inference="alignment:Splign:2.1.0"
     exon            490..1293
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1518
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1642
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..2526
                     /gene="Vom2r6"
                     /gene_synonym="RGD1562697"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagaagc tgtgtgcttt cactattgcc tttttttccc tgaagttttg tctcatcttg
       61 tgcagtttga ctgaacccaa ttgcttttgg aggataaaga agagcgaaga taatgatgga
      121 gatttgcgaa gtgactgtgg ttttgttctt tttacagacg aggaccctat tgaagaagat
      181 ttttataatc gcattattaa ttttagaata ccaggaagaa aatatgagtt ttttctggta
      241 ctgttttttg ctactgatga gatcaacaag aatcctaatc ttttatccaa catgtctttg
      301 tcattttcca tcattgttgg cctgtgtgaa gatacattgg gagttctgga aaaagcatat
      361 tcacataaaa acaacaattt cgaactaatt aattattact gtagaatgaa gcaatgttgt
      421 gatgtagaac ttacaggacc atcatggaca acttccttaa aactgtcaat ttattcaagg
      481 aaaccaaaga ttttctttgg atcatttaac cctaacctga gtgaccatga ccagtttccc
      541 tatatctatc agatagcagc caaggacaca tatttgttcc atggcatggt ctccttgatg
      601 tttcattttg gatggacttg gataggactg gtcatctcag atgatgacca aggtattcag
      661 tttctctcag acttgagaga agaaatacaa aggcatgaaa tctgtttagc ttttgtgaat
      721 atgatcccag aaaccatgca gatattcaag acaagactta agatatatga ccaacaactt
      781 atgacatctt cagcaaaggt tgttgtcatt tatggtgaaa tgaactccac tctagaactc
      841 agctttagaa gatgggcata tttaggtgca cagagaatct ggatcacaac ctcacaatgg
      901 gatgtcacca cacataaaaa agatttcagc cttgatttct tccacgggac tgtcactttt
      961 gcccaccacc acaatgacat tgctgtattt aggaatttta tgcaaacaat aaacacatcc
     1021 aagtatccaa tagacatttc acagtctatg ctgcactgga atcattttaa ctgttcaatc
     1081 tcaaagaaca ataacaaaat ggattgttta acattcaaca actcattgga atggttagca
     1141 cagcacacgt ttgacatggc cctgagtgat gaaggttaca atttgtataa tgctgtgtat
     1201 gctgttgccc acacctacca tgaactcatt tttcaacaag tagagtctca gaaaatggaa
     1261 gaacccaaag gaatatgcgc tgactgtcag caggtggctt ctttgctgaa aactagggtg
     1321 tttactaacc ctgttggaga actggtgaac atgaatcata aggaaaatca gtgtgccaag
     1381 tatgacattt tcatgatttg gaattttcca caaggccttg gattaaaagt gaaaatagga
     1441 agctattttc cttgtttgcc acagagtcaa caacttcata tatctgaaaa ctgggagtgg
     1501 gtcacaggag aaacagtggt tccctcctca gtgtgtagtg tgacatgtac tgcaggattc
     1561 agaaaaattc atcagaaaca aacagctgat tgctgctttg attgtgtcca gtgccaagaa
     1621 aatgagattg ccaatgatac agatatggaa cagtgtgtga ggtgtcctga tgattcgtat
     1681 gccaacttag aacaaaccca gtgcctccaa agagctgtga catttcttgc ttatgaagat
     1741 ccactgggga tggctctagg ctgcatggcc ctgtccttct cagccatcac aactctagta
     1801 ctagtcactt ttgtgaagta cagggatact cccattgtga aagccaataa ccgcattctc
     1861 agctatatcc tactcatatc tctagtcttc tgttttctct gttcattgct cttcattgga
     1921 catcccaacc aggccacctg catcctgcag cagaccacat ttgcaatatt tttcactgtt
     1981 gctatttcta ctgtgttggc caaaacaata actgtggtca cagctttcaa gctcactact
     2041 ccagggagaa ggataagaag gatgatgata aagggggcaa ctaacttgct cattcccatt
     2101 tgtaccctaa tccaacttgt cctctgtgga atctggttgg tgacatctcc tccatttatt
     2161 gacagagata cacaatctga acatgggaag atagtcatca tttgcaacaa aggctcagac
     2221 attgccttcc actttgtctt gggatatttg ggctccttgg ctctggggag cttcactgtg
     2281 gctttcttgg ctaggaacct tcctgacaga ttcaatgagg ccaagttcct aacattcagc
     2341 atgttggtct tctacagtgt ttggatcacc ttcctccctg tctaccacag caccaggggg
     2401 aaggttatgg ttgttgttga ggttttctct atcttggctt cctgtgcagg gttgctaggg
     2461 tgcatatttg tccaaaagtg ttatattctt ttatttcgaa cagatttaaa ttttcttcag
     2521 aaataa
//
