LOCUS       NM_001099494            2367 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 54 (Vom2r54), mRNA.
ACCESSION   NM_001099494 XM_001078266 XM_001078851
VERSION     NM_001099494.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2367)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000007.1.
            
            On or before Sep 25, 2008 this sequence version replaced
            XM_001078266.1, XM_001078851.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-285               JAXUCZ010000007.1  13568091-13568375
            286-1086            JAXUCZ010000007.1  13568732-13569532
            1087-1314           JAXUCZ010000007.1  13570174-13570401
            1315-1438           JAXUCZ010000007.1  13571806-13571929
            1439-2367           JAXUCZ010000007.1  13575959-13576887
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2367
                     /gene="Vom2r54"
                     /note="vomeronasal 2 receptor, 54"
                     /db_xref="GeneID:691438"
                     /db_xref="RGD:1583935"
     exon            1..285
                     /gene="Vom2r54"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..2367
                     /gene="Vom2r54"
                     /codon_start=1
                     /product="vomeronasal 2 receptor 54"
                     /protein_id="NP_001092964.1"
                     /db_xref="GeneID:691438"
                     /db_xref="RGD:1583935"
                     /translation="MLFAINEINWNSDILPNTSLGLEIYTLPHYERNILRNIFHWLTG
                     LNTFIPNFSCRQQSKLAAALTGVSWETSENIARLLNLYKFPQLTFGPFNHVLTDRSQF
                     PSLYQVAPNGASLFCAIVSLMLYFNWTWVGLLTTDDHSGVQFISDLTKELDKNKICMA
                     FVRTVFLLGEEIYNVSHDFWVNILESSAKVIIIYTDITFIFFETENIYRKFTLGKVWI
                     TTSKLLGSKYSKYNMLSLSHGILTFSPHHGEILGFTKFIQEATPIKYPDDSFLHFVWS
                     LSFNCPLSDCKILENCMPNASLELLPGKIFDMVISEESYNVYNAVYTIANSLHEMILN
                     QCQIQPQANKNRNTYFPWQLHPFLKNIQVINSAGDHVVLDWKRKTDPEYDITNLWNLP
                     TGLSVFVNVGRYSPSSPQGQRLSLSEYMIQWPIEFTEIPQSVCSESCTPGFRKIIQEG
                     KLTCCFDCIPCQENEISNETDMNQCMKCPETHYANAEKRQCLKKTVTFLSYDDPLGMG
                     LTIISMGFSALTALIIGVFVNYRDTAIVKANNRSLSYILLITLTHCFLCPLFFIGLPN
                     TVTCILQENLLRLLFTIALSCVLAKSITVVMAFQITAPRRKTRWLLFLRAPNLVIPVC
                     LLVQVIFTSIWLGTSPPFVEMDVQSEHGYIIILCNKGSGLAFHGTLAYLGVMAIASYI
                     MAFLSRNLPDIFNEAKFLAFSMLVFCSVWVTFLPVYHSTTGKTTVVMEIFSILASSAS
                     ILSLIFAPKCYVILFRSEKNTLHQIRNKGHHRSKILFKI"
     exon            286..1086
                     /gene="Vom2r54"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1314
                     /gene="Vom2r54"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1438
                     /gene="Vom2r54"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..2367
                     /gene="Vom2r54"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtacagaact accagcttgt tttggccatg ttatttgcca tcaatgagat caactggaac
       61 tccgacattt taccaaacac ctctcttgga cttgagattt atactctgcc acattatgaa
      121 aggaatattc tgaggaatat attccactgg ctcactggct tgaacacctt cattcctaat
      181 ttcagctgta gacaacagag caaattagct gcagcactta cgggagtatc atgggaaaca
      241 tctgaaaata ttgcaagact actgaatctt tacaaatttc cgcagcttac ttttggacct
      301 tttaatcatg ttctgactga cagaagtcaa tttccttctc tgtatcaggt ggcccccaat
      361 ggagcatctc tattttgtgc tattgtctct ttgatgcttt atttcaactg gacctgggtg
      421 ggactgctca ccacagatga ccacagtggt gttcagttta tatcagactt gacaaaggag
      481 ctggacaaga ataaaatctg tatggctttt gtgaggacag tatttttgct aggggaagaa
      541 atatataatg tgtcacatga tttttgggtg aatattctgg agtcatcagc aaaagtgatc
      601 ataatttata cagacattac ttttatattt tttgaaacag aaaatatcta cagaaagttc
      661 acactgggaa aagtttggat cacaacctca aaattgctag gctcaaaata ttcaaaatac
      721 aatatgttaa gtttatccca cggtattctc actttttcac ctcatcatgg ggagattctt
      781 ggtttcacaa aatttataca ggaagctaca cccatcaagt acccagatga cagttttctt
      841 cattttgtgt ggagtttgag tttcaactgc ccactttctg attgtaaaat cctggaaaac
      901 tgtatgccca atgcctcttt ggaattgttg ccagggaaaa tatttgacat ggtcatatct
      961 gaagagagtt acaatgtata caatgctgtg tataccattg ccaacagtct ccatgagatg
     1021 attctcaatc agtgccaaat tcaaccacag gcaaacaaaa ataggaatac ctatttcccc
     1081 tggcagcttc acccttttct gaagaacatt caagtgataa attctgctgg tgatcatgtt
     1141 gtcctggact ggaaaaggaa gacagatcca gagtatgata ttaccaacct atggaatttg
     1201 ccaacaggtc tttcagtctt tgtgaatgtg ggtagatatt ctccaagttc tccccagggt
     1261 caacggctgt cattatcaga atatatgatt caatggccca tagaatttac agagatccct
     1321 cagtctgtct gcagtgagag ctgcactcct ggatttagga aaatcatcca ggagggcaag
     1381 cttacctgtt gctttgactg cattccttgc caagagaatg agatttccaa tgagacagat
     1441 atgaaccagt gcatgaagtg tccagaaact cattatgcaa atgcagaaaa gagacagtgc
     1501 ctcaagaaaa ctgtaacatt tctgtcctat gatgatccct tggggatggg actcacaatc
     1561 atatctatgg gattctctgc actcacagct cttattattg gggtctttgt aaactacaga
     1621 gatactgcaa ttgtaaaggc caataataga tctctcagtt acatcctgct catcactctc
     1681 acacactgtt tcctctgtcc tttgttcttc attggacttc caaacacagt tacatgtatc
     1741 ctgcaggaga atctacttag acttctcttc accatagctt tatcctgtgt gttggccaaa
     1801 agcatcactg ttgtcatggc ctttcagatt actgctccaa gaagaaagac aagatggttg
     1861 ctatttttaa gggccccaaa tttggtcatt ccagtttgcc tcctggtaca agtgattttc
     1921 actagtatat ggctgggtac atctcctcca tttgttgaga tggatgttca atctgaacat
     1981 ggatatatca tcattctatg caacaagggt tcaggtcttg ccttccatgg cactctggcc
     2041 tacttgggtg tcatggctat tgctagctac atcatggctt ttttgtccag gaatctgcct
     2101 gacatattta atgaggctaa atttctggct ttcagcatgc tggtgttctg cagtgtttgg
     2161 gtcaccttcc tccctgtcta ccacagcacc acagggaaga ctacagtggt tatggaaatt
     2221 ttctctatct tagcttccag tgcaagcatt ctaagcctaa tctttgctcc aaagtgctat
     2281 gttattttgt ttagatcaga gaaaaacaca cttcatcaaa tcaggaataa aggacatcat
     2341 aggagcaaaa ttctatttaa gatatag
//
