LOCUS       NM_173131               2790 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 53 (Vom2r53), mRNA.
ACCESSION   NM_173131
VERSION     NM_173131.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Herrada,G. and Dulac,C.
  TITLE     A novel family of putative pheromone receptors in mammals with a
            topographically organized and sexually dimorphic distribution
  JOURNAL   Cell 90 (4), 763-773 (1997)
   PUBMED   9288755
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Mar 18, 2021 this sequence version replaced NM_173131.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF016178.1, SRR22582419.1239876.1
                                           [ECO:0000332]
            RNAseq introns              :: partial sample support SAMEA5760389,
                                           SAMEA5760393 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-230               JAXUCZ010000007.1  10917984-10918213
            231-522             JAXUCZ010000007.1  10933875-10934166
            523-1329            JAXUCZ010000007.1  10934515-10935321
            1330-1557           JAXUCZ010000007.1  10936485-10936712
            1558-1681           JAXUCZ010000007.1  10943530-10943653
            1682-2790           JAXUCZ010000007.1  10949540-10950648
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..2790
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /note="vomeronasal 2 receptor, 53"
                     /db_xref="GeneID:286915"
                     /db_xref="RGD:727942"
     exon            1..230
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..2607
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /note="putative pheromone receptor (Go-VN1)"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 53"
                     /protein_id="NP_775154.3"
                     /db_xref="GeneID:286915"
                     /db_xref="RGD:727942"
                     /translation="MLFSWLFISLFLQMRTLICLIATPSCLTESGYLLHQDGAVVIGA
                     FFPVLKSVPVSEIIDWKTLSFDTHNSLWINAQMYQLVLAMIFAINEINVKSHILPNTS
                     LGLEIYNLPHFERNILRSALSWLTGLSKFIPNYTCRKDSKSAAALTGISRKTSETFGT
                     LLDIYKFPQLNFGPCDPVQIGRNQFPSVYQVAPKDTPLFCGITSLMLHFNWTWVGLLI
                     TDDNRGSQFLSELRKELDKNKICIAFVETVIFLGESLHCPLTHNQMQTLESSANVIIV
                     YGHFAFQLIVIQSKHRKYEMKKIWVITSKWVGQKIEQYTMLELAHGTLTFSPHHGEIS
                     DFTNFMQEVTPIKYPEDIFLHILWNQYFSCPLLHSECKIFENCIPNASLELLPGGVFE
                     LVMTEESYNVYNAVYAVAHSLHEKALHQVEIQPQDNKDRTILFPWQLHPFLKNIQLIN
                     SVGDCVILDWKKKTDTEYDISNIWNFPTGLSLLVKVGTFAPSAPKGQQLSISEHKINW
                     PIGFTEIPKSVCSESCSPGHRKVILESKPACCFDCTPCPDKEISNETDVGQCVKCPES
                     HYANTEKSHCLKKTMTFLDYNDSLGTGLTLMSLGFFVVTGLVIGVFIIHRNTPIVKAN
                     NRSLSYILLITLTLCFLCPLLFIGLPNTATCILQQNLFGLLFTVALSTVLAKTITVVM
                     AFKITAPGRKTRWLLILRAPQFIIPLCALMQILFSGIWLGTSPPFVDMDAHSEHGHII
                     ILCNKGSAIGFYCTLAYLGVMAFGSYLLAFMSRNLPDTFNESKALAFSMLMFCSVWVT
                     FLPVYHSTTGKVRVAMEMFSILASSASILTLIFVPKCYIVLFRPERNILPLNREKRQH
                     RSKNPET"
     exon            231..522
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /inference="alignment:Splign:2.1.0"
     exon            523..1329
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1557
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1681
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /inference="alignment:Splign:2.1.0"
     exon            1682..2790
                     /gene="Vom2r53"
                     /gene_synonym="RGD1310577"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaacgtcta ctaatatgct gttctcttgg ctttttatct ccttgtttct acagatgcga
       61 actctcatct gtttaattgc aaccccttcc tgcctaactg aatcaggata cctcctacac
      121 caggatggag ctgtggtcat tggtgcattt tttcctgttt taaagtccgt gcctgtaagt
      181 gaaataatag attggaaaac attatctttt gacacacaca attctttatg gataaatgca
      241 caaatgtacc aacttgtttt ggccatgata tttgcgatca atgagatcaa tgtgaagtcc
      301 catattttac caaacacctc tctgggactt gagatttata atctgccaca ttttgaacgg
      361 aatattctga ggagtgcact atcttggctc acaggcttga gcaaattcat tcctaattac
      421 acttgcagaa aggatagcaa atcagctgct gcacttactg gaatatcacg gaaaacatct
      481 gagacctttg ggactttgtt ggacatttac aaatttcctc agcttaattt tgggccgtgt
      541 gatcctgttc agataggcag aaaccagttt ccatctgtgt accaggtggc ccccaaagac
      601 acacctctgt tctgtggtat cacctctttg atgcttcatt tcaactggac ctgggtggga
      661 ctgctaatca cagatgacaa cagaggttct cagtttctat cagagttaag aaaggagctg
      721 gacaagaata aaatctgcat agcctttgtg gaaacagtaa tatttttggg ggaatcattg
      781 cattgtccgc taacccacaa tcagatgcag actctagagt catcagcaaa tgtgattata
      841 gtttatggac attttgcttt tcaattaatt gtaatacaaa gtaaacacag aaagtatgaa
      901 atgaaaaaga tttgggtcat aacctcaaaa tgggttggcc aaaaaattga acaatatacc
      961 atgttagaat tggcccatgg cactctcact ttctcacccc atcatgggga gatttctgat
     1021 ttcacaaatt ttatgcagga agtcacccct atcaagtatc cagaagacat ttttcttcac
     1081 atcttgtgga accagtattt cagttgtcca cttttgcatt ctgagtgtaa aatctttgaa
     1141 aactgtatac ccaatgcctc tttggaattg ttgccagggg gtgtttttga gctagtcatg
     1201 actgaagaga gttacaatgt gtacaatgct gtgtatgcag tggcccacag tctccatgag
     1261 aaggctctcc atcaagtaga aattcaacca caggataata aagataggac tatattattt
     1321 ccttggcagc ttcacccttt tctgaagaac attcagctga taaattctgt tggtgattgt
     1381 gtgattctgg actggaaaaa gaagacggat acagagtatg atatctccaa tatttggaat
     1441 ttcccaacag gtctttcctt attagtgaaa gtgggtacat ttgctccaag tgctcccaag
     1501 gggcaacaac tttcgatatc tgaacacaaa attaactggc ccataggatt tacagagatt
     1561 ccaaagtctg tatgcagtga gagctgcagt cctggacaca ggaaagtcat cctggagagc
     1621 aagcctgcct gttgctttga ctgcactcct tgcccagata aagagatttc caacgagaca
     1681 gatgtgggtc agtgtgtgaa gtgtcctgaa tctcattatg caaatacaga gaagagtcac
     1741 tgcctgaaga agactatgac ctttctggat tataatgatt ccttggggac gggactcaca
     1801 ctcatgtctc tgggattctt tgttgtcaca ggtcttgtta ttggggtttt tataatccac
     1861 agaaacactc caattgtgaa ggccaataat agatctctca gttatatcct gctcatcact
     1921 ctcactctct gtttcctttg tcccttgctc ttcattgggc ttccaaacac agccacatgt
     1981 atcctacagc agaacttgtt tggacttctc ttcactgtgg ctctatccac agtgttggcc
     2041 aaaactatca ctgtagttat ggcattcaag attactgctc caggaagaaa gacaagatgg
     2101 ttgctgatat taagagcccc tcagttcatc attccacttt gtgccctgat gcaaatcctt
     2161 ttctctggga tatggctggg aacatctcct ccatttgttg acatggatgc tcactctgaa
     2221 catgggcaca tcatcattct atgcaacaag ggctcagcta ttggcttcta ctgtactctg
     2281 gcctacctgg gagtcatggc ctttggtagt tacctcttgg ctttcatgtc caggaatctt
     2341 cctgacacat ttaatgaatc caaggccctg gctttcagca tgctgatgtt ctgcagtgtc
     2401 tgggtcacat tcctccctgt ctaccacagc accactggga aggtcagggt ggctatggaa
     2461 atgttttcta tcttggcttc cagtgcaagc attctaaccc taatctttgt ccctaagtgc
     2521 tacattgttt tgttcagacc agagaggaac atacttcctc taaacagaga aaaaagacag
     2581 cataggagta aaaatcctga aacatagcag tcaaaacaaa cattggccta gcacaaaatg
     2641 tctgattgtt gacatttctc ctgctatata aacaattagt cctttgactt tgaggacagg
     2701 atcacatgag acagactggt gatattgctt caaattatgt aaaatatgtg aaatggttat
     2761 attgaccaat aaaatacttg ttcttgtatg
//
