LOCUS       NM_001099515            2565 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 49 (Vom2r49), mRNA.
ACCESSION   NM_001099515 XM_001066737
VERSION     NM_001099515.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jul 26, 2007 this sequence version replaced XM_001066737.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN09345330 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               JAXUCZ010000004.1  158419670-158419884
            216-513             JAXUCZ010000004.1  158421000-158421297
            514-1323            JAXUCZ010000004.1  158428020-158428829
            1324-1548           JAXUCZ010000004.1  158437857-158438081
            1549-1672           JAXUCZ010000004.1  158454545-158454668
            1673-2565           JAXUCZ010000004.1  158465885-158466777
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2565
                     /gene="Vom2r49"
                     /note="vomeronasal 2 receptor, 49"
                     /db_xref="GeneID:688392"
                     /db_xref="RGD:1589986"
     CDS             1..2565
                     /gene="Vom2r49"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 49 precursor"
                     /protein_id="NP_001092985.1"
                     /db_xref="GeneID:688392"
                     /db_xref="RGD:1589986"
                     /translation="MKLLIAFSLLILLTAFQEQISCFSLSKPASPGYYQDGDFVIGGL
                     FSLRVTAGDTRSKFGFTDTTHIPEHVYVDFTKHYQHMLAMVFAIENINKDPNILFNMS
                     LGFYLFNVDFIEMKAVESSMALLSGESPAVPNYSCRPEKTDKLVAVIGGISTGISTQI
                     SQLLSLYNVPQISYAPFDQSFETKVQLQSPYQFPVHTTALYQGIIQLLLYFSWVWVGL
                     VVPDDVRGELFLRDITEEMNNHGLCVAFAEKFPEFPAKDTGNREHFMERFTLTRVIVA
                     FGDTYSLLRFVYIIFCNTPFGNVWVTTSDWDITTLPFQQNLGYTYFGGGLSFSVHMDE
                     ILGFKNFLRSVQPRKYPQDIFIQDVWSILFECPYFDQHWIRELSQCEQNGNLSTRPLH
                     FWDMNTSPSSYKVHEAVYAIAQALHEELLLTLEGDSLHKDLPQAPLPWKLHPFLQKGQ
                     LRRSSNEENVVNKEVSATKLDIFNYQSLQNGSKAQVKVGEFVFESHSVQHFSLNEELI
                     TFGEHHSQTPFSVCSPSCPLGFRKSPVEGKPFCCFDCLPCPDGEIANETDMDQCIKCP
                     EDQYPNRQRNQCLPKITEFLSHEDTLGAVFVSIAISLSALSAMILGLFICYRDTSIVR
                     ANNRNLSYLLLVSLMLCFFCSLIFIGQPRTVTCVLRQMIFGIVFSVAVSTILAKTFIV
                     VVAFKAIKPGSALKMSMVIRLSNTIVFCGSIIQVCICAVWLGTYPPFPDVDMHSEFGQ
                     IILWCNEGSTLAFYCVLGYLGFLASLSLLIAFLARRLPDSFNETKTITFSMLVFCSVW
                     ISFVPTYLSSKGKTMVAVEILSILASSAGLLGCIFLPKCYMILMSSGGHSRIKFFK"
     exon            1..215
                     /gene="Vom2r49"
                     /inference="alignment:Splign:2.1.0"
     exon            216..513
                     /gene="Vom2r49"
                     /inference="alignment:Splign:2.1.0"
     exon            514..1323
                     /gene="Vom2r49"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1548
                     /gene="Vom2r49"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1672
                     /gene="Vom2r49"
                     /inference="alignment:Splign:2.1.0"
     exon            1673..2565
                     /gene="Vom2r49"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaaattac tcattgcttt ctctctcctg attttgctca ctgcattcca ggaacaaatt
       61 tcttgtttct ctttaagtaa acctgcttct cctggctact atcaagacgg ggattttgtt
      121 attggaggac tcttttccct tagagtgact gctggagaca ctagaagcaa atttggcttt
      181 acagacacaa cccatatacc agaacatgtt tatgtggatt tcaccaaaca ttatcagcac
      241 atgttggcaa tggtttttgc tatagaaaat atcaacaagg atccaaatat tttattcaat
      301 atgtccctgg gattctatct cttcaatgtt gactttattg agatgaaggc tgtggagagt
      361 tctatggctt tgctctctgg agagagcccc gcagttccta actacagctg caggcctgag
      421 aagactgata agctggttgc agtgatagga ggcatttcaa caggaatatc aacccagatc
      481 tcccaacttc taagtctcta caatgtccca cagatcagct atgctccttt tgaccagagt
      541 tttgagacca aagtccagct ccagtctcct taccagtttc ctgtgcacac cacagctctg
      601 tatcagggaa ttattcaact gctgctatac ttctcttggg tctgggttgg cctggtggtt
      661 ccagatgatg tgaggggaga actcttcctt agggacatca cagaggagat gaacaaccat
      721 ggactttgtg ttgcatttgc agaaaagttt ccagaatttc ctgctaagga cacaggaaac
      781 agggaacatt ttatggaaag attcacattg acccgtgtta ttgttgcatt tggtgacaca
      841 tattctcttc tgagatttgt ctatattatc ttttgtaata cccctttcgg taatgtctgg
      901 gtcacaactt ctgattggga tatcaccaca ttaccctttc aacaaaatct aggttataca
      961 tattttggtg gaggattatc attttctgtt cacatggatg aaattctggg attcaagaat
     1021 tttcttagaa gtgttcaacc taggaaatac cctcaagata tctttatcca ggatgtgtgg
     1081 tcaatcttat ttgaatgtcc ctattttgat cagcactgga tcagggaact gagtcaatgt
     1141 gagcaaaatg gcaacctcag tacacgacct ctgcattttt gggatatgaa tacctcaccc
     1201 tcgagctaca aagttcatga agctgtgtat gctattgccc aggcactcca tgaggagctc
     1261 ttactcacat tggaaggaga ctcactccat aaagatttac cccaggctcc tctcccatgg
     1321 aagcttcatc cattcttaca aaagggccaa cttaggagaa gctccaatga ggagaatgta
     1381 gtaaacaagg aggtttcagc aaccaagctt gacatcttta attaccagtc tctgcagaac
     1441 ggtagcaaag ctcaagtgaa agttggcgag tttgtctttg agtctcacag tgttcagcat
     1501 ttttccctaa atgaggaact cataactttt ggtgaacacc acagtcagac acctttttct
     1561 gtttgcagtc caagttgtcc tcttggattt aggaaatcac ctgttgaagg gaaaccattc
     1621 tgttgttttg attgtctccc atgtccagat ggagagattg caaatgaaac agatatggat
     1681 caatgcatca agtgtcctga agatcaatat ccaaatagac agaggaatca gtgtcttcct
     1741 aaaatcacag aatttttgtc ccatgaagat actttgggag ctgtttttgt ctccatagcc
     1801 attagtttat ctgccttgtc agctatgatt ttaggattat ttatctgcta tcgagacaca
     1861 tccattgtca gagcaaataa cagaaatctc agttatctcc tcctggtttc tctaatgctc
     1921 tgtttctttt gctcattaat attcattggc cagcccagaa cagtcacttg tgtcttgaga
     1981 caaatgattt ttgggattgt attttctgtt gctgtttcta ctatcttggc aaagaccttc
     2041 attgtggttg tggccttcaa agccatcaaa ccaggaagtg ccttaaaaat gtcgatggtg
     2101 atccgactct caaacactat agtcttctgt ggttccatca ttcaagtgtg catctgtgca
     2161 gtctggctgg gaacgtatcc ccctttccct gatgtcgaca tgcactcaga gtttgggcaa
     2221 atcatcctct ggtgtaatga gggctccacc cttgccttct attgtgttct ggggtacttg
     2281 ggctttctag ccagtctcag tttgcttatt gcttttctag cgagaaggct acctgacagc
     2341 tttaatgaga caaaaacaat aacattcagc atgctggttt tctgtagtgt gtggatttct
     2401 tttgtaccca cttacttgag ctccaaaggc aaaaccatgg tggctgtgga aattctttca
     2461 attctggctt ccagtgctgg cttactgggc tgtatatttc ttcccaaatg ctatatgatc
     2521 ttaatgagtt caggtggcca ttcacgaata aagttcttta aatga
//
