LOCUS       NM_001099514            2571 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 48 (Vom2r48), mRNA.
ACCESSION   NM_001099514 XM_001066682
VERSION     NM_001099514.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2571)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jul 26, 2007 this sequence version replaced XM_001066682.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.908748.1 [ECO:0000332]
            RNAseq introns              :: partial sample support SAMN09345330,
                                           SAMN09345331 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-218               JAXUCZ010000004.1  158347664-158347881
            219-516             JAXUCZ010000004.1  158348989-158349286
            517-1329            JAXUCZ010000004.1  158372514-158373326
            1330-1554           JAXUCZ010000004.1  158383015-158383239
            1555-1678           JAXUCZ010000004.1  158384497-158384620
            1679-2571           JAXUCZ010000004.1  158387752-158388644
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2571
                     /gene="Vom2r48"
                     /note="vomeronasal 2 receptor, 48"
                     /db_xref="GeneID:686145"
                     /db_xref="RGD:1585454"
     CDS             1..2571
                     /gene="Vom2r48"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 48"
                     /protein_id="NP_001092984.1"
                     /db_xref="GeneID:686145"
                     /db_xref="RGD:1585454"
                     /translation="MKLLIVFSLLIVLIVFQVQISYVSLNNPASPGYYQDGDFVIGGL
                     FSLRMTTGDTRSKLFDFKDAIYLPEYVYGYLTKHYQHMLAMIFAIEKINKDPNILFNM
                     SLGFYLFNVDFIEKKAIESSMALLSGESPPVPNYSCRPEKTDKLVAVIGGISTGISTQ
                     ISRVLSLYNIPQISYAPFDHSLGTRVQLQSPYQFPMHTTALYHGIIQLLLYFTWVWVG
                     MVVTDDMRGELFLRDITEEMNNHGLCVAFVEKIPEFSAQDRVTKKAFMERYTSTRVIV
                     GFGDTYSLLRFVSSIIFHTNFGNVWITTSYWDFTILPFYQFISRALFSVGRLSFSVRM
                     DQILGFKDFLRSVQPRKYPHDIFLQDVWSILFKCPYSYQHGVRILTQCEQNGTLSTRP
                     LHVWDMNTLPPSYKVHAAVYAIAQALHEELSLGMEGDSFTKCVPQTHLPWKLHPFLQK
                     GKLWRRTNQENIINKEVLATVFDIFNSQSLQKGNEVQVQVGEFVFESHSVQHFSLNEK
                     LITWPRNQKEIPLSLCSQSCPLGFRKTPVEGKPSCCFDCLPCPDGEIANETDMDQCIK
                     CPEDQYPNKQRNQCLPKITAFLSCEDPLGAVLVSVAISLSAFSAMILGLFIHYRDTPI
                     VRANNRNLSYLLLVSLMLCFFCSLIFICQPTTVTCILRQMIFGVVFSITISAILAKTF
                     IVVVAFKVIKPGSTLQTWMVTRVSNAIVCCGSSIQVCICAVWLGTYPPFPDVDMQSEF
                     GQIILWCNEGSTLAFYCVLGYLGFLASLSLLIAFLARRLPDTFNEAKTITFSMLVFCS
                     VWISFVPTYLSSKGKTMVAVEILSILASSSTLLGCIFLPKCYVILMRSGGHSRKKIFK
                     "
     exon            1..218
                     /gene="Vom2r48"
                     /inference="alignment:Splign:2.1.0"
     exon            219..516
                     /gene="Vom2r48"
                     /inference="alignment:Splign:2.1.0"
     exon            517..1329
                     /gene="Vom2r48"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1554
                     /gene="Vom2r48"
                     /inference="alignment:Splign:2.1.0"
     exon            1555..1678
                     /gene="Vom2r48"
                     /inference="alignment:Splign:2.1.0"
     exon            1679..2571
                     /gene="Vom2r48"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaaattac tcatcgtttt ctctctcctg attgttctca ttgtattcca ggtacaaatt
       61 tcttatgtct ccttaaataa tcctgcttct cctggctact atcaagatgg ggattttgtt
      121 atcggaggac tcttttccct tagaatgact actggagaca ctagaagtaa attatttgac
      181 tttaaagatg caatctattt gccagaatat gtttatggat atctcactaa acattatcag
      241 cacatgttgg caatgatttt tgctatagaa aaaatcaaca aggacccaaa tattctattc
      301 aatatgtccc ttggattcta tctcttcaat gttgacttta ttgagaagaa ggccatagag
      361 agttctatgg ctttgctctc aggagagagc cccccagttc ctaactacag ctgcaggcct
      421 gagaagactg ataagctggt tgcagtgata gggggcattt caacaggaat atcaactcag
      481 atctcccgag ttctaagtct ctacaacatt ccacagatca gctatgctcc ttttgaccac
      541 agtcttggga ccagagtcca gctccagtct ccttaccagt ttccgatgca cactacagct
      601 ctatatcatg gaataattca actgctacta tacttcactt gggtctgggt tggcatggtg
      661 gttacagatg atatgagggg agaactcttc ctgagggaca tcacagagga gatgaacaac
      721 catggacttt gtgttgcatt tgtagaaaag attccagaat tttctgctca ggacagagta
      781 accaaaaaag cttttatgga aagatacaca tcaacacgtg ttattgttgg atttggtgac
      841 acatattctc ttctgaggtt tgttagtagt atcattttcc acactaattt tggtaatgtc
      901 tggatcacga cttcttattg ggatttcacc atacttcctt tttaccaatt tataagtaga
      961 gcattattct ctgttggaag attatcattt tctgttcgca tggatcaaat tctgggattc
     1021 aaggattttc tcagaagtgt tcaacctaga aaataccctc atgatatctt tctccaggat
     1081 gtgtggtcga tcttatttaa atgtccatat tcctatcagc atggagtcag gatactaact
     1141 caatgtgagc aaaatggcac cctgagcaca cgacctctgc atgtttggga catgaatacc
     1201 ttacccccaa gctacaaagt ccatgctgct gtatatgcca ttgcccaggc actccatgaa
     1261 gagctgtcac ttggaatgga aggagactcc ttcactaaat gtgtacccca gactcatctc
     1321 ccatggaagc tccatccatt tttacaaaag ggcaaactat ggagaaggac caatcaggag
     1381 aatattatta acaaggaggt tttggcaact gtatttgaca tcttcaattc ccagtctctg
     1441 caaaagggta atgaagttca agttcaagtt ggcgagtttg tctttgaatc tcacagtgtt
     1501 cagcattttt ccctaaatga aaaactcata acttggccca gaaaccaaaa ggagattcct
     1561 ttgtctcttt gcagtcaaag ttgtccactt ggatttagga aaacacctgt tgaagggaaa
     1621 ccctcctgtt gttttgattg tctcccatgt ccagatggag agattgcaaa tgaaacagat
     1681 atggatcaat gcatcaagtg ccctgaagat cagtatccaa ataagcagag gaatcagtgt
     1741 ctccctaaaa ttacagcatt tttgtcctgt gaagatcctc taggagcagt tttggtttct
     1801 gtggccatta gtttatctgc cttttcagcc atgattttag gattatttat ccactatcgg
     1861 gacacaccca ttgtcagagc aaataacaga aatctcagtt atctcctcct ggtttctcta
     1921 atgctctgct tcttttgctc attgatattc atttgtcaac ctacaacagt cacttgtatc
     1981 ttgagacaaa tgatttttgg ggttgtattt tctattacca tttctgctat cttagcaaag
     2041 accttcattg tggttgtggc cttcaaagtc atcaaaccag gaagcacctt acaaacatgg
     2101 atggtgaccc gagtctcaaa tgctatagtc tgctgtggtt ccagcattca agtgtgcatc
     2161 tgtgcagtct ggctgggaac gtatccccct ttccctgatg tcgacatgca gtcagagttt
     2221 gggcaaatca tcctctggtg taacgagggc tccacccttg ccttctattg tgttctgggc
     2281 tacttgggct ttctggccag tctcagcttg cttattgcct tcctggcaag aaggctgcca
     2341 gacacattca acgaggcaaa aacaatcaca ttcagcatgc tggttttctg cagtgtgtgg
     2401 atttcttttg tacccactta cctgagctcc aaaggcaaaa ccatggtggc tgtggaaatc
     2461 ctttcaattc tggcctctag ttctacacta ttgggctgca tatttcttcc caaatgctat
     2521 gttatcctaa tgaggtcagg tggccattct agaaagaaga tctttaaatg a
//
