LOCUS       NM_001099506            2475 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 47 (Vom2r47), mRNA.
ACCESSION   NM_001099506 XM_001059944 XM_345218
VERSION     NM_001099506.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2475)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
REFERENCE   2  (bases 1 to 2475)
  AUTHORS   Martini,S., Silvotti,L., Shirazi,A., Ryba,N.J. and Tirindelli,R.
  TITLE     Co-expression of putative pheromone receptors in the sensory
            neurons of the vomeronasal organ
  JOURNAL   J Neurosci 21 (3), 843-848 (2001)
   PUBMED   11157070
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000002.1.
            
            On or before Jul 26, 2007 this sequence version replaced
            XM_345218.2, XM_001059944.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-276               JAXUCZ010000002.1  151294837-151295112 c
            277-1137            JAXUCZ010000002.1  151291362-151292222 c
            1138-1368           JAXUCZ010000002.1  151284333-151284563 c
            1369-1492           JAXUCZ010000002.1  151266249-151266372 c
            1493-2475           JAXUCZ010000002.1  151265012-151265994 c
FEATURES             Location/Qualifiers
     source          1..2475
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q31"
     gene            1..2475
                     /gene="Vom2r47"
                     /note="vomeronasal 2 receptor, 47"
                     /db_xref="GeneID:365807"
                     /db_xref="RGD:1559813"
     exon            1..276
                     /gene="Vom2r47"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..2475
                     /gene="Vom2r47"
                     /note="vomeronasal receptor V2R2a"
                     /codon_start=1
                     /product="vomeronasal 2 receptor 47"
                     /protein_id="NP_001092976.1"
                     /db_xref="GeneID:365807"
                     /db_xref="RGD:1559813"
                     /translation="MKTMIHTIKEINERKDILPNHTLGYQIFDTCFSISKTVESTFVF
                     LTGQEEYKPNFRNSSGKYLAGIIGSGGSSLSVASSRILEVYYMSQVGYTSSSSILSDH
                     FRFPTFYRTIPSDKIQTEAMVNLIKHFGWVWVGAIAADDDYGKYGIKSFKEKLERSNL
                     CVAFSETIPKVYSNEKMQKAINAVKSSTAKVVVLYATDIDLRPFVLEVVHHNITDRTW
                     IASEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEF
                     WQTAFNCTWPNSSVPYNVDYRGNMTGKEDRFYAMSDRLCTGEEKLEDLKNTYLDTSQL
                     RITNNVKQAVYLLAHALDRLSRCDVPQPDVKCSQIPNFDPFELMIYIMRMEFTTHDGR
                     KIELDRSGDVKNGYYDILNWQMDDAGEIAFVKFGEYKFTSSKYELVLSKNSTLFWNTE
                     SSELPDSFCTKLCPPGTRKGIRQGKPTCCFDCIPCADGYVSEKPGQRECDPCSEDDWS
                     NAEKSKCVPKLVEFLSYEEALGFTLVILSIFGALVVMAVTVVYVIHRHTPLVKANDRE
                     LSFFIQMSLVITVLSSMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYR
                     ISKSKTRLISMHPIFRKLIVLICVVGEIGVCTAYLVLEPPRMFKNIEPQNVKIIFECN
                     EGSIEFLYSIFGFNVLLALLCFLTTFVARQLPDNYYEGKCITFGMLVFFIVWISFVPA
                     YLSTKGKFKVAVEIFAILASSYGLLGCVFLPKCFIILLRPKRNTDETVGGRVPTLDKS
                     IQLTSASVSSELNNTAESIVLDE"
     exon            277..1137
                     /gene="Vom2r47"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1368
                     /gene="Vom2r47"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1492
                     /gene="Vom2r47"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..2475
                     /gene="Vom2r47"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttccgctgga tgaaaaccat gattcacacc atcaaggaga ttaatgagag gaaggacatt
       61 ttgcccaacc acactctggg ctaccagatt tttgacacct gtttctccat ctcgaaaaca
      121 gtggagtcaa ctttcgtgtt tcttacagga caggaagaat ataaacccaa ttttagaaac
      181 agctctggaa aatatctagc aggaattatt ggatcagggg gatcatcttt gtcagttgct
      241 tcttcaagaa ttctggaggt gtattacatg agtcaggtgg gctatacttc ttcctcctca
      301 attcttagtg accatttccg gtttccaact ttttatcgca caatacccag tgataaaatc
      361 cagactgagg ccatggtgaa tcttatcaaa cactttggtt gggtctgggt aggtgctatt
      421 gcagctgatg atgattatgg aaaatatgga ataaaatcct ttaaggaaaa actggagagg
      481 tccaacctct gcgttgcttt ctctgaaacc attccaaaag tctactccaa tgagaaaatg
      541 caaaaagcta ttaatgcagt aaagagttcc actgcaaaag tcgttgtgct ttatgcaact
      601 gacattgacc tcagaccctt tgtgctggaa gtggttcatc ataacataac cgacaggaca
      661 tggatagcca gtgaagcctg gattacctca gctctcattg caaagcctga gtattttccc
      721 tatttcggtg gaaccattgg atttgcaatc ccgagaagtg ttatacctgg attaaaagaa
      781 tttctttatg atgtacaccc tagcaaggat ccaaatgatg tcttgaccat tgaattctgg
      841 caaactgctt ttaactgtac ctggcccaac agtagtgtgc cttacaatgt ggactacaga
      901 gggaatatga ctggtaaaga agacagattt tatgccatgt ctgatcggct atgcactgga
      961 gaggagaagc tggaggatct gaaaaatact tatctggata catcccagct aagaatcaca
     1021 aacaatgtta aacaagccgt gtatcttttg gctcatgccc tggatcgttt aagcagatgt
     1081 gatgtaccgc aaccagatgt aaaatgctca caaataccta actttgaccc cttcgaacta
     1141 atgatttata ttatgagaat ggaatttact acccatgatg gacgcaaaat agaacttgat
     1201 agaagtggag acgtgaaaaa tggatattat gatattctca attggcaaat ggatgatgct
     1261 ggagaaattg cctttgtcaa gtttggagaa tacaaattca caagttctaa atatgaactt
     1321 gtcctttcaa agaactcaac attattctgg aacactgaat cttcagagct tccagattca
     1381 ttctgtacca aattatgtcc tccagggaca cggaagggga ttcgccaggg gaaacccaca
     1441 tgttgctttg attgcatccc atgtgctgat ggatatgtgt cagagaaacc aggccaaagg
     1501 gaatgtgatc catgcagtga agatgactgg tccaatgcag agaagagcaa gtgtgtacca
     1561 aagcttgtgg aatttctctc ttatgaggag gccctggggt tcaccctcgt catcctttcc
     1621 atatttgggg cacttgtggt catggcagta accgttgtgt atgtaatcca cagacacact
     1681 ccattggtga aagccaatga ccgggagctg agcttcttca ttcagatgtc tctggttatc
     1741 acagtgctgt catctatgct gttcataggc aaaccatgca actggtcctg catggcccgc
     1801 caggtcactc tggcattggg cttttgcctt tgtctgtctt ccattcttgg aaagactatt
     1861 tcactgtttt ttgcctacag gatttccaaa tctaaaaccc ggcttatatc catgcatcct
     1921 atttttcgta agctcattgt gttaatctgt gttgtagggg agattggtgt atgcacagct
     1981 tacttggtgt tggagcctcc aaggatgttc aagaacattg aacctcagaa tgtaaagatc
     2041 atctttgaat gcaatgaagg ttctatagag tttctttact ctatatttgg gtttaatgtc
     2101 cttctggctc tgctgtgttt tctcacaacc tttgtggctc gccagctgcc agataactat
     2161 tacgaaggga aatgtatcac ttttgggatg ctggtctttt tcattgtttg gatctctttt
     2221 gtccctgctt acttgagcac caaaggcaaa ttcaaagtgg ctgtggaaat atttgccatt
     2281 ttggcatcca gctatggctt gttgggctgt gtatttcttc ccaagtgttt cattattttg
     2341 ctgaggccaa agaggaacac ggatgaaact gttggtggaa gagtcccaac tcttgacaag
     2401 agcatccagt tgacctcagc ttctgtgagt agtgagctta acaacaccgc agagtcgatt
     2461 gttctggatg agtag
//
