LOCUS       NM_001099502            2943 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 46 (Vom2r46), mRNA.
ACCESSION   NM_001099502 XM_001064105 XM_039102018 XM_215581
VERSION     NM_001099502.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
REFERENCE   2  (bases 1 to 2943)
  AUTHORS   Ryba,N.J. and Tirindelli,R.
  TITLE     A new multigene family of putative pheromone receptors
  JOURNAL   Neuron 19 (2), 371-379 (1997)
   PUBMED   9292726
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On or before Apr 6, 2023 this sequence version replaced
            XM_039102018.1, NM_001099502.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-380               JAXUCZ010000002.1  150816657-150817036 c
            381-672             JAXUCZ010000002.1  150810920-150811211 c
            673-1542            JAXUCZ010000002.1  150808781-150809650 c
            1543-1773           JAXUCZ010000002.1  150805162-150805392 c
            1774-1897           JAXUCZ010000002.1  150780269-150780392 c
            1898-2943           JAXUCZ010000002.1  150777882-150778927 c
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q31"
     gene            1..2943
                     /gene="Vom2r46"
                     /note="vomeronasal 2 receptor, 46"
                     /db_xref="GeneID:295091"
                     /db_xref="RGD:735122"
     exon            1..380
                     /gene="Vom2r46"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..2877
                     /gene="Vom2r46"
                     /note="putative pheromone receptor V2R2B"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 46 precursor"
                     /protein_id="NP_001092972.2"
                     /db_xref="GeneID:295091"
                     /db_xref="RGD:735122"
                     /translation="MASRKKCLILGLTVFLWLGLYAQNVNQNETCRLLRKFNLTGYVE
                     AENHTVVIGGLFPVHYRTMPTSDSDEEIESPMCEGFNFRGFRWMKTMIHTIKEINERK
                     DILPEHTLGYQIFDNCFSTTKAMESALVFLTGQEEYKPNYKNSTGKYLVAIIGAGGST
                     MSVAVSRILQSYSVLQVGYASSSSILSDISKFPNTFRTIPSDKYQSEAIVNLIIHFGW
                     VWVGAIATDDDYGKHGVKLFREKMERSHLCVAFSETIPKVYSNEKMQIAVNEVKKSTA
                     KVIVLYATDIHLSPFVLEVVHHNITDKTWIASEAWITSALIAKPEYFPYFGGTIGFAI
                     PRSVIPGLKEFLYDIHPSKDPNDLLTIEFWQTAFNCTWPNSSVSYNVDHRVNMTGKED
                     RLYAMSDQLCTGEEKLEDLKNTYLDTSQLRITNNVKQAVYLIAYAMDRLSKADITEEY
                     RENVVCPIIPDFESGELWNYFRNIKFTTHDGRKIETDFFGDIVRGYYDILNWHMDNAG
                     NIAFVKVGEYKFTTSKYELVLPKNSTLFWKTESYRLPDSVCTKVCSPGTRRKNRPGQP
                     LCCFDCIPCEDGYVSEKPGQRLCDPCGEDNWSNPQKNKCVPKLVEFLAYEEALGYALV
                     ILSIFGALVALAVTVVYVIHRHTPLAKANDQELSFLIQMSLVITVLSSILFIGKPYNW
                     TCMARQVTLALGFCLCLSSILGKTISLFFAYRISKSKTRLISMHPIFRKLIVLICVVG
                     EIGVCTAYLMLKPPRMVKNIEPQNVKIIFECNEGSIEFLCSIFAFDVLLALLCFLTTF
                     VARKLPDNYYEGKCITFGMLVFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLG
                     CIFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLASTSVSSELNTTVSTVLDE"
     exon            381..672
                     /gene="Vom2r46"
                     /inference="alignment:Splign:2.1.0"
     exon            673..1542
                     /gene="Vom2r46"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1773
                     /gene="Vom2r46"
                     /inference="alignment:Splign:2.1.0"
     exon            1774..1897
                     /gene="Vom2r46"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..2943
                     /gene="Vom2r46"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtctacaaca tgaaatgatt tcctcaggag cagcaagcag gtcactaggt taggcacacg
       61 cacactccaa cactccatta ctgtgctttc ttaaaacctg tgtcacttca acactttcat
      121 tatcctcagg atcaccaaat taagatggct agcagaaaga agtgcttgat tctgggatta
      181 actgtatttt tgtggcttgg attgtatgct caaaatgtaa accagaatga gacatgcagg
      241 ttgctgcgca aatttaattt gactggatac gtagaagctg aaaaccatac tgttgttatt
      301 ggagggctat ttcctgttca ctataggacc atgccaacaa gtgactctga tgaggaaata
      361 gaatcaccca tgtgtgaggg gtttaatttc cggggtttcc gctggatgaa aaccatgatc
      421 cacacaatca aggagattaa tgagaggaag gacattttgc ctgaacacac tctgggctac
      481 cagatatttg acaactgttt ctccaccacc aaagcaatgg agtcagcctt ggtgtttcta
      541 acaggacagg aagaatacaa gcctaactat aaaaacagca ctggaaaata cctcgttgca
      601 attattggag caggaggatc aactatgtca gttgcagttt caagaattct acaaagttac
      661 agtgtacttc aggtgggcta tgcttcttcc tcctcaattc tcagtgacat ttctaaattt
      721 ccaaacactt ttcgcacaat acccagtgat aagtaccagt ctgaggcaat tgtgaatctg
      781 attatacatt ttggatgggt ctgggtaggt gctattgcaa ctgatgatga ttatggtaaa
      841 cacggagtaa aattatttag ggaaaaaatg gagaggtccc acctctgtgt tgctttctct
      901 gaaactattc caaaagtcta ctccaatgag aaaatgcaaa tagctgttaa tgaagtaaag
      961 aaatccactg ccaaagtcat tgtgctttat gcaactgaca ttcatctcag cccctttgtg
     1021 ctggaagtgg ttcatcataa cataactgac aagacatgga tagccagtga agcctggatt
     1081 acctcagctc tcattgcaaa gcctgagtat tttccctatt ttggtggaac cattggattt
     1141 gcaatcccga gaagtgttat accaggatta aaagaatttc tttatgatat acaccctagc
     1201 aaggatccaa atgatctcct gaccattgaa ttctggcaaa ctgcttttaa ctgtacctgg
     1261 cccaacagca gtgtgtctta caatgtggac cacagagtga atatgactgg aaaagaagac
     1321 agattgtatg ccatgtctga tcagctctgc actggagagg agaagctgga ggatctgaaa
     1381 aatacctatc tggacacatc tcagctgaga attacaaaca atgtgaaaca agctgtgtat
     1441 cttatagctt atgccatgga tcgtttaagc aaagctgata taacagaaga atatagggaa
     1501 aatgtagtat gtccaattat acctgacttt gagtcagggg agctatggaa ttactttagg
     1561 aatataaaat ttactaccca tgatggaagg aaaatagaga ctgatttctt tggagacata
     1621 gtacgtggat attatgatat tctcaattgg cacatggata atgctggaaa tatcgccttt
     1681 gtcaaggttg gagaatacaa atttacaact tcaaaatatg aacttgttct tccaaagaac
     1741 tcaacactat tttggaagac tgaatcttac aggcttccag attcagtctg cacaaaagtg
     1801 tgttctccag ggaccaggag gaaaaatcgc ccagggcaac ctctatgctg ctttgattgc
     1861 atcccatgtg aggatggata tgtgtcagag aaaccaggcc aaagactatg tgacccatgt
     1921 ggtgaagata actggtccaa tccacagaag aacaagtgtg tgccaaaact tgtggaattc
     1981 cttgcttatg aggaggctct gggctatgca cttgtcatcc tttcaatatt tggagcactt
     2041 gtggccttgg cagtcactgt tgtgtatgtg atccataggc atactccatt ggcaaaagcc
     2101 aatgaccagg agctgagctt cctcattcag atgtccctgg ttatcacggt gctctcatcc
     2161 attctgttca taggcaaacc atacaattgg acctgcatgg cccgccaggt cactctggca
     2221 ctgggatttt gcctttgtct gtcttccatt cttggaaaga ctatttcact cttttttgcc
     2281 tacaggattt caaaatccaa aacccggctt atatccatgc atcctatttt tcgtaaactc
     2341 attgtgttga tctgtgttgt aggggagatt ggtgtatgca cagcttactt gatgttgaag
     2401 cctccaagga tggtcaagaa cattgaacct cagaatgtaa agatcatctt tgaatgcaat
     2461 gaaggttcta tagagtttct ttgctctata tttgcctttg atgtccttct ggctctactg
     2521 tgtttcctta caacctttgt ggctcgcaag ctgccagata actattatga agggaaatgt
     2581 atcacttttg ggatgctggt ctttttcatt gtctggatct cttttgttcc tgcttacttg
     2641 agcaccaaag ggaaattcaa agtggctgtg gaaatatttg ccattttggc atccagctat
     2701 ggcttgttag gctgcatatt tcttcccaag tgtttcatta tcttgctaag gccaaagagg
     2761 aataccgatg aaactgttgg tggaagagtc cccactgttg acaggagcat ccagctggcc
     2821 tcaacctctg tgagcagtga gcttaacacc acagtctcca ctgttctgga tgagtagaac
     2881 tgtgagctcc aagtgacatg caaaggtgga taatgaccta gatcaatttg cttcttaatg
     2941 ttg
//
