LOCUS       NM_001099511            2562 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 42 (Vom2r42), mRNA.
ACCESSION   NM_001099511 XM_001053488
VERSION     NM_001099511.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jul 26, 2007 this sequence version replaced XM_001053488.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-206               JAXUCZ010000001.1  149006077-149006282 c
            207-434             JAXUCZ010000001.1  148984158-148984385 c
            435-1302            JAXUCZ010000001.1  148980967-148981834 c
            1303-1530           JAXUCZ010000001.1  148980027-148980254 c
            1531-1654           JAXUCZ010000001.1  148979398-148979521 c
            1655-2562           JAXUCZ010000001.1  148961806-148962713 c
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..2562
                     /gene="Vom2r42"
                     /note="vomeronasal 2 receptor, 42"
                     /db_xref="GeneID:679557"
                     /db_xref="RGD:1587126"
     CDS             1..2562
                     /gene="Vom2r42"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 42 precursor"
                     /protein_id="NP_001092981.1"
                     /db_xref="GeneID:679557"
                     /db_xref="RGD:1587126"
                     /translation="MIKMFTFLFAFLVLKLSFLLCSSIDNRCFWRLKTKTPWEEDKDI
                     DCFFFIYTKFGHVKNEQFSGNLDKRLTTKNIHLILTLYFALEEINMNPNILPNISLLV
                     KIECSLLDDWRINSLSSKREEYLPNYYCINQRSYLIVLTGPMCETNTLYSRFFMLFLT
                     FYGLQLYYGPFHPLLSSQELYPYLYQMAPKDTSLALAMVSLLVHFSWNWVGAVVSDDD
                     PGYEFILELRREMQRNSVCLAFVSIIISDEKLFLKSINIYYKQITMSSAKVVIIYGDK
                     DSPLQLNFRLWNLLDIQRIWVTTSQWDMIIKNGKSLLTSFYGTLTFSHHYSELSGFKT
                     FIQTAFPSNYSDDISLARLWWMYFNCSLSLSDCNNLQNCSNENIVRWLFRHHFEMSLS
                     DTTYDLYNSVYAVAHTLQQMLVQQEDTWHIDDGKELEFDSWQMVSFLKNTQFINPAGD
                     KVNLNHKEKPDTEYDIHYTMDFWPNLVFKLKMETFSQNLQHGQQLNMLKEMIEWITGH
                     QQSPTSICSIPCSPGFRKSPQQGKPVCCFDCTPCPEDEISNMTNMNQCIKCLDDEYAN
                     PGGTNCFKKLIAFLGYEDPLGMSLTILALCFSALTAFVFGIFLKHQESPTVKANNRTL
                     SYVLLTSLISCFLCSLLFIGHPNFATCIMQQTTFAVVFTVAASTVLAKTIIVILAFKV
                     TNTSRKMRWLLVSGAPKFIIPICTMIQLILCGIWLGTSPPFVDADGHVEKGHILIFCN
                     KGSVLAFYCILGYLGSIAIGSFTLAFLARNLPNTFNEAKYLTFSMLVFCSVWITFLPV
                     YHSTKGKSMVAVEVFCILASSAGLLFCIFAPKCFIILLRPEKKSSQKFQNIHSKM"
     exon            1..206
                     /gene="Vom2r42"
                     /inference="alignment:Splign:2.1.0"
     exon            207..434
                     /gene="Vom2r42"
                     /inference="alignment:Splign:2.1.0"
     exon            435..1302
                     /gene="Vom2r42"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1530
                     /gene="Vom2r42"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1654
                     /gene="Vom2r42"
                     /inference="alignment:Splign:2.1.0"
     exon            1655..2562
                     /gene="Vom2r42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgataaaga tgttcacttt tctgtttgca tttcttgtcc tgaagctttc ttttcttttg
       61 tgcagttcaa ttgacaaccg ttgtttttgg agattaaaaa ccaagacacc ttgggaagaa
      121 gacaaagaca ttgattgctt tttttttatt tatacaaagt ttggtcatgt aaagaatgaa
      181 cagttcagtg gtaatttaga caagaggtta acaaccaaga atatccactt gattttgact
      241 ctttattttg cccttgaaga aataaacatg aaccccaata ttctacctaa catttcactg
      301 ctagttaaaa ttgaatgtag tctcctggat gattggagaa taaacagttt atcttctaaa
      361 agagaagaat atcttcctaa ctactactgt ataaatcaga gaagttattt aattgtactt
      421 acgggaccaa tgtgtgagac taacactttg tattcgagat ttttcatgtt atttctcaca
      481 ttctatggct tacagcttta ctatgggcca tttcaccctc tcttgagcag ccaagaactg
      541 tatccatatc tttaccagat ggctcctaag gacacatctc tggcactggc catggtttct
      601 ttgcttgtcc atttcagctg gaactgggtg ggagcagttg tttcagatga tgacccaggt
      661 tatgaattta tcttggaatt gagaagagaa atgcaaagga acagtgtgtg tttagccttt
      721 gtgagtatca tcattagtga tgaaaagtta tttctgaaaa gtataaatat ctattacaag
      781 cagattacga tgtcatcagc aaaagttgtt atcatttatg gagacaaaga ctctcctcta
      841 cagttgaact ttagactatg gaatttatta gatatccaaa gaatctgggt cactacctca
      901 cagtgggata tgatcataaa aaatggaaaa tccctcctta cttccttcta tgggactctc
      961 actttttcac atcactattc tgaattatca ggttttaaaa catttatcca gacagcattc
     1021 ccttcaaact acagtgatga catttccctt gctagattat ggtggatgta ttttaattgt
     1081 tctttgtcat tatctgattg taacaatctg caaaattgtt caaatgaaaa catagttaga
     1141 tggttattca ggcaccattt tgaaatgtct ttgagtgata ccacttatga cctatataat
     1201 tctgtgtatg ctgtggctca tacactccaa cagatgcttg tgcaacaaga agatacatgg
     1261 cacatagatg atggaaaaga actggaattt gactcttggc agatggtctc tttcctgaaa
     1321 aatacccaat ttataaaccc tgctggagac aaagtgaacc tgaatcataa agaaaaaccg
     1381 gatacagagt atgacattca ctacactatg gatttttggc caaatcttgt atttaaactg
     1441 aaaatggaaa cattttccca aaatctgcaa catggtcaac aattgaatat gttgaaagaa
     1501 atgatagagt ggatcacagg ccatcaacag tctccaacgt caatttgcag tattccttgc
     1561 agtccaggat tcagaaaatc ccctcagcag ggaaagcctg tgtgctgttt tgattgtaca
     1621 ccctgcccag aggatgaaat ttccaacatg acaaacatga atcaatgtat caagtgtcta
     1681 gatgatgagt atgccaatcc tggaggaact aactgcttca aaaaacttat tgcattcctg
     1741 ggttatgaag atccattggg aatgtctctg actatcttgg ctttatgctt ctctgctctc
     1801 acagcttttg tatttggtat ctttttgaaa caccaagaat cacccactgt caaggccaat
     1861 aacagaactc tcagctatgt tctactcacc tccctcatct cttgttttct ctgttccttg
     1921 ctcttcattg gtcatcccaa ctttgccaca tgtatcatgc agcagaccac atttgctgtt
     1981 gtgttcactg tagctgcatc tactgtattg gccaaaacaa ttattgtaat attggccttc
     2041 aaggttacta atacaagtag aaaaatgagg tggctgctgg tatcaggggc acctaaattc
     2101 atcattccaa tttgcacaat gattcaactg attctctgtg gaatttggct gggtacttct
     2161 cctccatttg ttgatgctga tggacatgtt gaaaaaggcc acattttgat tttctgtaac
     2221 aaaggttcag ttcttgcttt ctattgcatc ctgggatact taggctccat tgccattgga
     2281 agtttcaccc ttgccttctt agccaggaat ctgcccaaca cattcaatga agccaagtac
     2341 ctgacattca gtatgctagt attttgcagt gtctggatca cctttcttcc tgtctatcat
     2401 agcaccaagg gcaagtctat ggtggctgtg gaagttttct gtatattggc ctctagtgca
     2461 gggctgcttt tttgcatctt tgcaccaaag tgtttcatta ttttgttaag gcctgagaaa
     2521 aaatcttctc agaagtttca gaatatacat tctaaaatgt aa
//
