LOCUS       NM_173317               3560 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 40 (Vom2r40), mRNA.
ACCESSION   NM_173317 XM_344918
VERSION     NM_173317.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3560)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
REFERENCE   2  (bases 1 to 3560)
  AUTHORS   Herrada,G. and Dulac,C.
  TITLE     A novel family of putative pheromone receptors in mammals with a
            topographically organized and sexually dimorphic distribution
  JOURNAL   Cell 90 (4), 763-773 (1997)
   PUBMED   9288755
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AF016180.1.
            
            [WARNING] On May 8, 2024 this sequence was replaced by NM_173317.2.
            
            On Dec 17, 2003 this sequence version replaced XM_344918.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF016180.1 [ECO:0000332]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3560
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..3560
                     /gene="Vom2r40"
                     /note="vomeronasal 2 receptor, 40"
                     /db_xref="GeneID:286983"
                     /db_xref="RGD:708406"
     exon            1..276
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
     exon            277..556
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
     exon            557..1117
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1924
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
     CDS             1181..3184
                     /gene="Vom2r40"
                     /note="putative pheromone receptor (Go-VN3)"
                     /codon_start=1
                     /product="vomeronasal 2 receptor, 40"
                     /protein_id="NP_775439.1"
                     /db_xref="GeneID:286983"
                     /db_xref="RGD:708406"
                     /translation="MAPKDTSLALAMVSLFVHFSWNWVGAVVSDDDPGYEFILELRRE
                     MQRNNFCLAFVSIIVSDDNLFLKRYNIYYNQIKMSSAKVVIIYGDKDSPLQVNFRLWN
                     LFDIQRIWVTTSQWDMIINNGKFLLNSFYGTLSFSHHYSELSGFKTFIQTAYPSNYSD
                     DFSLGILWWVYFNCSLSLSECKNLQNCPKENIFRWLYRHHFEMSLSDTTYDLYNSMYA
                     VAYTLQQMLLKQADTWQIDDGKEPEFDSWQMLSFLRNIQFINPVGDKVNLNHEEKLDT
                     KYEIHQTLTFLPNPVFKLKIGTFSQNLSHGRQLYMLKEMIEWNTGHQQSPTSVCSIPC
                     SPGFRKSPQLGKPVCCFDCTPCPENEISNMTNMNQCIKCLNDQYANPGGTRCLKKVIV
                     FLGYEDPLGMSLAILALCFSALTAFVLSIFLKHQETPTVKANNRTLSYVLLISLISCF
                     LCSLLFIGHPSFTTCIMQQTTFAVVFTVAASTVLAKTIIVILAFKVTNTSRKMRWLLV
                     SGAPKFIIPICTMIQLILCGIWLGTSPPFVDADGHVEKGHILIFCNKGSILAFYCVLG
                     YLVSIAIASFTLAFFARNLPDTFNEAKFLTFSMLVFCSVWVTFLPVYHSTKGKSMVAV
                     EVFCILASSAGLLFCIFAPKCFIILLRPEKKSFQKFQNIHSKI"
     exon            1925..2152
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
     exon            2153..2276
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
     exon            2277..3550
                     /gene="Vom2r40"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctatcttgaa gagtgctttt ctgtgtaact tgctttgctg cacgtttaca aattattttt
       61 tcttggtgaa attactaaga tgttctcttt tctgtttgca attcttgtcc tgaagctttc
      121 ttttcctttg tgcagtccaa ttgacaaccg ttgtttttgg agattaaaaa ccaagacatt
      181 ttgggaagga gacaaagaac ttgattgctt tttttttatt tatacaaggt ttggtcatgt
      241 aaagaatgaa cagttcagtg ggaatctaga caagcggttg acatctaaga ctatccactt
      301 gattttgact ctttattttg cccttgaaga aataaacagg aacccccata ttctacctaa
      361 catttcactg ctagttaaaa ttgaatgtgg gctgctagat gattggacaa taaacagttt
      421 atcttctaaa agagaaaaat atcttcctaa ctactactgt ataaatcaga gaagatattt
      481 aattgtactt acaggaccaa tgtggttagc atctgtcata gttgggccac tcctatacat
      541 aactaagagg ccagagatgg atcaactcaa ctcttctggc tcaaattctt ccctaaagtc
      601 actaattgga tatggcttta ctcagcttct cattgatttg ctttgcttga acaatcactg
      661 cccatttgtt ttagtcttct gtctccttta tattctggct acaactgcct ctactgatgc
      721 acattgaact gcatgaactc acaaattaac tcaacaccat tgcactgcat tctttgcact
      781 gagtctcaaa agtctggttt aactcttctg cattgaactc aactgactaa ttagaactca
      841 gaaatctgca tccctctgtc tcctgagtac tttgattaaa ggtgtgtact atcacacctg
      901 cacctaaact tttctatact aaaaatttgc tttatactag gctgaccttg aactaagtga
      961 tctgcttgcc tctgtctcct gccttccaag gaatgcctat ttcccagcag gatatttttt
     1021 gcctacaagt cttcagatgt gatccattaa gtatagtcat gttgctggat taaaattcct
     1081 ctacagattt aattttctga tcctgaggct agtgaaactt tactatgggc catttcaccc
     1141 tctcttgagc aaccaagaac tgtatccata tctttaccaa atggctccta aggacacatc
     1201 tctggcactg gccatggttt ctttgtttgt ccatttcagc tggaactggg taggagctgt
     1261 tgtttcagat gatgacccag gttatgaatt tatcttggaa ttgagaagag aaatgcaaag
     1321 gaacaatttt tgtttagcat ttgtgagtat cattgttagt gatgacaatt tatttctgaa
     1381 aaggtataat atctattaca accagatcaa gatgtcatca gcaaaagttg ttatcattta
     1441 tggagacaaa gactctcctc tacaggtgaa ctttagacta tggaatttat ttgatatcca
     1501 aagaatctgg gtcactactt cacagtggga tatgatcata aataatggaa aattcctcct
     1561 taattccttc tatgggactc tcagtttttc acatcactat tctgaattat ctggttttaa
     1621 aacatttatc cagacagcat acccttcaaa ctacagtgat gacttttctc ttggtatatt
     1681 atggtgggtg tattttaatt gttctttgtc attatctgaa tgtaagaatc tgcaaaattg
     1741 tccaaaggaa aacatattta gatggttata caggcaccat tttgaaatgt ctttgagtga
     1801 tactacttat gacctatata attctatgta tgctgtggct tacacactcc aacagatgct
     1861 tctgaaacaa gcagatacat ggcaaataga tgatggaaaa gaaccagaat ttgactcttg
     1921 gcagatgctc tctttcctga gaaatatcca atttataaac cctgttggtg acaaagtgaa
     1981 cctgaatcat gaagaaaaac tggatacaaa gtatgagatt caccagactt tgactttttt
     2041 gccaaatcct gtatttaagc tgaaaatagg aacattttcc caaaacttat cacatggtcg
     2101 acaattatat atgttgaaag aaatgataga gtggaacaca ggccaccaac agtctccaac
     2161 ctcagtttgc agtattcctt gtagtccagg attcagaaaa tcccctcagc tgggaaagcc
     2221 tgtttgctgt tttgattgta caccctgccc agaaaatgaa atttccaaca tgacaaacat
     2281 gaatcaatgt atcaagtgtc taaatgatca gtatgccaat cctggaggaa ctcgctgcct
     2341 caaaaaagtt attgtattcc tgggttatga agatccattg ggaatgtctc tggctatctt
     2401 ggctctgtgc ttctctgctc tcacagcttt tgtacttagt atctttttga agcaccaaga
     2461 aacacccact gtcaaggcca ataatagaac tctcagctat gttctactca tctccctcat
     2521 ctcttgtttt ctctgctcct tgctcttcat tggtcatccc agctttacca catgtatcat
     2581 gcagcagacc acatttgctg ttgtgttcac tgtagctgca tctactgtct tggccaaaac
     2641 aattattgta atattggcct tcaaggttac taatacaagt agaaaaatga ggtggctgct
     2701 ggtatcaggg gcacctaaat tcatcattcc aatttgcaca atgattcaac tgattctctg
     2761 tggaatttgg ctgggtactt ctcctccatt tgttgatgct gatggacatg ttgaaaaagg
     2821 ccacattttg attttctgta acaaaggttc aattcttgct ttctattgtg tcctgggata
     2881 cttagtctcc attgccattg caagtttcac ccttgcattc ttcgccagaa atctgcccga
     2941 cacattcaat gaagccaagt tcctaacatt cagtatgcta gtattttgca gtgtctgggt
     3001 cacctttctt cctgtctatc atagcaccaa gggcaagtct atggtggctg tggaagtttt
     3061 ctgtatattg gcctctagtg cagggctgct tttttgcatc tttgcaccaa agtgcttcat
     3121 tattttgtta agacctgaga aaaaatcttt tcagaagttt cagaatatac attctaaaat
     3181 ttaaaacatt cattaaattt ttctgacaca cttgctagac caaacttatt cagaagactc
     3241 cactgacact actagttgaa atcaaatttt agatccaaac atggaatttg ttcccaataa
     3301 agaaaggaag cactatgtat tagaatttaa aaacacgtct taaatcttgg ttctcataaa
     3361 tcaaactgta tgatcagtca tttcaataac tgtttgctgt atttcttaat tttatgctta
     3421 tacttgaaga atgtaaagac tgggaattgg ttctgagttt tatgaattaa tttctaattt
     3481 tactttcctt ggaaaaaatg tctagtgtgt gttgttgtgc tctataataa ataattatga
     3541 gataaatgca aaaaaaaaaa
//
