LOCUS       NM_001099458            2526 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus vomeronasal 2 receptor, 4 (Vom2r4), mRNA.
ACCESSION   NM_001099458 XM_001067385 XM_218106
VERSION     NM_001099458.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Young,J.M. and Trask,B.J.
  TITLE     V2R gene families degenerated in primates, dog and cow, but
            expanded in opossum
  JOURNAL   Trends Genet 23 (5), 212-215 (2007)
   PUBMED   17382427
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Jul 26, 2007 this sequence version replaced
            XM_218106.3, XM_001067385.1.
            
            Sequence Note: This record was generated from sequence identified
            by Janet Young (Fred Hutchinson Cancer Research Center).
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-206               JAXUCZ010000001.1  2889361-2889566     c
            207-489             JAXUCZ010000001.1  2886516-2886798     c
            490-1293            JAXUCZ010000001.1  2885325-2886128     c
            1294-1518           JAXUCZ010000001.1  2884144-2884368     c
            1519-1642           JAXUCZ010000001.1  2876535-2876658     c
            1643-2526           JAXUCZ010000001.1  2874499-2875382     c
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..2526
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /note="vomeronasal 2 receptor, 4"
                     /db_xref="GeneID:308248"
                     /db_xref="RGD:1564110"
     CDS             1..2526
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /note="vomeronasal type-2 receptor 116-like"
                     /codon_start=1
                     /product="vomeronasal 2 receptor 4 precursor"
                     /protein_id="NP_001092928.1"
                     /db_xref="GeneID:308248"
                     /db_xref="RGD:1564110"
                     /translation="MKKMWAFTIAFFSLKFCLILCSLTEPSCFWRIKRSEDNDGDLRS
                     DCGFVLFTLESPIEENFYTRIINFRIPARKYEFFLVLFFAIDEINKNPYLLSNMSLIF
                     SIIVGLCEDTMGVLDKAYSHQSKIFKRINYFCGIKQRCDINLTGPSWTTSLKLSIYSR
                     TPKIFFGSFNPNLSDHDQFPYIYQRANKDTYLFCGMVSLMFHFGWTWIGLVISNDDQG
                     IQFLSDLREEMQRHAICLAFVIMIPETMQIYKTRVKIYDQQLMTSSAKVVVIYGEMNS
                     TLELSFRRWAYLGAQRIWITTSQWDVITNQKDFSLDFSHGTVTFAHHHNDITIFRNFM
                     QTINTSKYPIDISQSMLQWNHFNCSISKNKKKMDCFTFNNPLEWLVQHTFDMVLSEEG
                     YNLYNAVYAVAHTYHELIFQQAESQKMADPKGVFTDCQQVASLLKTRVFINPVGELVN
                     MNHKENYCAKYDIFIIWYFPQGLGLKVKIGSYFPCLPQSQQLHISEDWEWVTEETLVP
                     SSVCSVTCTAGFRKIHQKQTADCCFDCVQCQENEIANDTDMEHCVRCPEDSYANLEQT
                     ECLQRVVTFLAYEDPLGMALGCMALSFSAITILVLVTFVKYRDTPIVKANNRILSYIL
                     LISLAFCFLCSLLFIGHPNQATCILQQTTFAIFFTVAISTVLAKTITVVTAFKLTTPG
                     RRIRKMMIKGAINLLIPICTLIQLVLCAIWLVTSPPFIDRDIQSEHGKIIIICNKGSV
                     IAFHIVLGYLGSLALGSFTVAFLARNLPDRFNEAKFLTFSMLVFYSVWITFLPVYHST
                     RGKVMVVVEVFSILASSAGLLGCIFVQKCYVLLVQPDLNVLQK"
     exon            1..206
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /inference="alignment:Splign:2.1.0"
     exon            207..489
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /inference="alignment:Splign:2.1.0"
     exon            490..1293
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1518
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1642
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..2526
                     /gene="Vom2r4"
                     /gene_synonym="RGD1564110"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaagaaga tgtgggcatt cactattgcc tttttttccc tgaagttttg tctcatcttg
       61 tgcagcttga ctgaacccag ttgcttttgg agaataaaga ggagtgaaga taatgatgga
      121 gatttgcgaa gtgactgcgg ttttgtcctt tttacactcg agagtcctat tgaagaaaat
      181 ttttatactc gcattattaa ttttaggata ccagcaagaa aatatgagtt ttttctggta
      241 ctgttttttg ctatcgatga gatcaacaag aatccttatc ttttatccaa catgtctttg
      301 atattttcca tcattgttgg cctgtgtgag gatacaatgg gagttctgga taaagcatat
      361 tcacatcaaa gcaaaatttt caaacgaatt aattatttct gtggaataaa gcaacgttgt
      421 gatataaacc tgacaggacc atcatggaca acttccttaa aactgtcaat ttattcaagg
      481 acaccaaaga ttttctttgg ctcatttaac cctaatctga gtgaccatga ccagtttccc
      541 tatatctatc agagagcaaa caaagacaca tatttgttct gtggcatggt ctccttgatg
      601 tttcattttg gatggacttg gataggactg gtcatctcaa atgatgacca aggtattcag
      661 tttctttcag acttgagaga agaaatgcaa aggcatgcaa tctgtttagc ttttgtgatt
      721 atgatcccag aaaccatgca gatatataag acaagagtta agatatatga ccaacaactt
      781 atgacatctt cagcaaaggt tgttgtcatt tatggtgaaa tgaactccac tctagaactc
      841 agctttagaa gatgggcata tttaggtgca cagagaatct ggatcacaac ctcacaatgg
      901 gatgtcatca caaaccaaaa agatttcagc cttgatttct cccatgggac tgtcactttt
      961 gcccatcacc acaatgacat cactatattt agaaatttta tgcaaacaat aaacacatcc
     1021 aagtatccaa tagacatttc gcagtctatg ctgcagtgga accattttaa ctgttcaatc
     1081 tcaaagaaca agaagaaaat ggattgtttt acgttcaaca acccattgga atggttagta
     1141 cagcacacat ttgacatggt cctgagtgaa gaaggttaca atttgtataa tgctgtgtat
     1201 gctgtggccc acacctacca tgaactcatt tttcaacaag cagagtctca gaaaatggca
     1261 gatcccaaag gagtattcac tgactgtcag caggtggctt ctttgctaaa aactagggta
     1321 tttattaacc ctgttggaga actggtaaat atgaatcata aggaaaatta ttgtgccaag
     1381 tatgacattt tcatcatttg gtattttcca caaggccttg gattaaaagt gaaaatagga
     1441 agctattttc cttgtttgcc acagagtcaa caacttcata tatctgaaga ctgggagtgg
     1501 gtcacagaag aaacactggt tccctcctca gtgtgtagtg tgacatgtac tgcaggattc
     1561 agaaaaattc atcagaaaca aacagccgac tgctgctttg attgtgtcca gtgccaagaa
     1621 aatgagattg ccaatgatac agatatggag cattgtgtga gatgtccaga ggattcgtac
     1681 gccaacttag aacaaaccga gtgcctccaa agagttgtga cttttctcgc ttatgaagat
     1741 ccattaggga tggctctagg atgcatggcc ctgtccttct cagccatcac aattctagta
     1801 ctagtcactt ttgtgaagta cagggatact cccattgtga aagccaataa ccgcattctc
     1861 agctacatcc tgctcatatc tctagccttc tgttttctgt gctcattgct cttcattgga
     1921 catcccaacc aggccacctg catcctgcag cagaccacat ttgcaatatt tttcacagtt
     1981 gctatttcta ctgtgttggc caaaacaata actgtggtca cagctttcaa gcttactaca
     2041 ccagggagaa ggataagaaa gatgatgata aaaggggcaa ttaacttgct cattcccatt
     2101 tgtaccctaa tccaacttgt tctctgtgca atctggttgg tgacatctcc tccatttatt
     2161 gacagagata tacaatctga acatgggaag ataatcatca tttgcaacaa aggctcagtc
     2221 attgccttcc acattgtctt gggatatttg ggctccttgg ctctggggag cttcactgtg
     2281 gctttcttgg ctaggaacct tcctgacaga ttcaatgagg ccaagttcct aacattcagc
     2341 atgttggtct tctacagtgt ttggatcacc ttcctccctg tataccacag caccaggggg
     2401 aaggttatgg ttgttgttga ggttttctcc atcttggctt ctagtgcagg gttgctaggg
     2461 tgtatatttg tccaaaagtg ttatgttctt ttagttcaac cagatttaaa tgttcttcag
     2521 aaataa
//
